mRNA_9420 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|350205
Unique NamemRNA_9420
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|350205 vs. uniprot
Match: A0A835YPG0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPG0_9STRA)

HSP 1 Score: 363 bits (932), Expect = 1.700e-122
Identity = 265/265 (100.00%), Postives = 265/265 (100.00%), Query Frame = 1 
Query:    1 MATVVQLPAALERINFESSEPSCLPILLWPNSLWDLSLRHCTIWAQYHLPASLESLTLVGAVVEGEFQSGGGAVGLPEGLEXXXXXXXXXXXXXXXXSTLRRVVTFGDDPMAEPGAPAHNATCNAFVHLHSPPPRLVELDLRGCGDMFVLPAFPASLEVLKLPGRYSAPIAAXXXXXXXXXXXXXXXXXXXXXXXXXXXLHVVAYEGKTSFNKRLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDCPQYTHSLGRCPVSWSS 795
            MATVVQLPAALERINFESSEPSCLPILLWPNSLWDLSLRHCTIWAQYHLPASLESLTLVGAVVEGEFQSGGGAVGLPEGLEXXXXXXXXXXXXXXXXSTLRRVVTFGDDPMAEPGAPAHNATCNAFVHLHSPPPRLVELDLRGCGDMFVLPAFPASLEVLKLPGRYSAPIAAXXXXXXXXXXXXXXXXXXXXXXXXXXXLHVVAYEGKTSFNKRLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDCPQYTHSLGRCPVSWSS
Sbjct:    1 MATVVQLPAALERINFESSEPSCLPILLWPNSLWDLSLRHCTIWAQYHLPASLESLTLVGAVVEGEFQSGGGAVGLPEGLEXXXXXXXXXXXXXXXXSTLRRVVTFGDDPMAEPGAPAHNATCNAFVHLHSPPPRLVELDLRGCGDMFVLPAFPASLEVLKLPGRYSAPIAAXXXXXXXXXXXXXXXXXXXXXXXXXXXLHVVAYEGKTSFNKRLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDCPQYTHSLGRCPVSWSS 265
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|350205 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YPG0_9STRA1.700e-122100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_58contigContig_58:579686..580824 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|350205|estExt_Genemark1.C_Ctg_580069
Hectar predicted targeting categoryother localisation
TranscriptId350527
TrackFilteredModels1
ProteinId350205
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|350205gene_9420Tribonema minus UTEX_B_3156 geneContig_58 579686..580824 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_9420_1exon_9420_1Tribonema minus UTEX_B_3156 exonContig_58 579686..580824 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_9420UTR3_9420Tribonema minus UTEX_B_3156 three_prime_UTRContig_58 579686..580026 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_9420CDS_9420Tribonema minus UTEX_B_3156 CDSContig_58 580027..580824 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|350205Trimin1|350205|estExt_Genemark1.C_Ctg_580069Tribonema minus UTEX_B_3156 polypeptideContig_58 580027..580824 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_9420 ID=mRNA_9420|Name=jgi.p|Trimin1|350205|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1139bp|location=Sequence derived from alignment at Contig_58:579686..580824- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAACAGTAGTGCAGCTTCCTGCTGCTCTGGAGCGCATCAACTTCGA
AAGTTCCGAGCCAAGCTGCCTCCCCATTCTGCTGTGGCCAAACAGCCTCT
GGGACCTGTCCTTGCGGCACTGCACCATCTGGGCGCAGTACCACCTGCCG
GCCTCCCTCGAATCTTTAACGCTGGTGGGTGCGGTGGTGGAGGGAGAGTT
CCAGAGCGGCGGCGGCGCGGTCGGGCTCCCAGAGGGCCTCGAAACACTCA
CACTGCTGGACTGCACGGTCGAGTTTCAGCTCCATCTGCCATCGACGCTG
CGGCGCGTCGTCACGTTCGGCGATGATCCCATGGCGGAGCCAGGGGCGCC
GGCGCACAACGCGACGTGCAACGCTTTCGTGCACCTGCACAGCCCGCCGC
CACGCCTGGTCGAGCTGGACTTACGCGGCTGCGGGGACATGTTTGTGCTG
CCGGCGTTTCCGGCATCGCTGGAGGTTCTCAAGCTGCCGGGCAGGTACAG
CGCGCCCATCGCGGCGCTGCCCGCATCGCTTCAGCAGCTGTGGCTCGGAG
GCAGGTTCAACAGCGCCCTGGGTCCGCTGCCCCGGCAGCTGCGGCAGCTT
CACGTCGTCGCATACGAAGGCAAAACCAGCTTCAACAAGAGGTTAGCCGC
GCTGCCTGACTCGCTGCAGGAGCTGCTGCTCGGCACAGCGTTCACGCAGC
GGCTGGGGAAGCTGCCCGCTGCGCTAAGGCGTCTCCACATCGACTGCCCA
CAGTACACACACAGCCTCGGCCGCTGCCCGGTGAGCTGGTCGAGTTGAAG
TTCAGTGTGGACAACTGCAAGTTCAACCACGTGCTCGGTCAACTGCCGCC
CACACTTCGCGCCCTCACCCTGGGCAGTAGCTTTTCGCAGCCGCTGGGAC
CGCAGCCGGAAGGCCTGCTAGTGCGCAGACGTGATGACTGATAGAGCGTG
CAGCAGCACCAGTAGGCAGAGTACAGCTAGTGTATTGCTGGGTGTTGCAT
GAAGTACCAGTAAGGTGGACATGCAGCTTTCGTAAATGCAGCAGAGATGC
AGGTTATGGTGGAACTAGGATAAATTTGCCGCGAGCCACACGGTGGCGAG
CGCTTTTTCGGTTGTAATATGGCAAGTATTTGGACGGCT
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protein sequence of jgi.p|Trimin1|350205

>Trimin1|350205|estExt_Genemark1.C_Ctg_580069 ID=Trimin1|350205|estExt_Genemark1.C_Ctg_580069|Name=jgi.p|Trimin1|350205|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=266bp
MATVVQLPAALERINFESSEPSCLPILLWPNSLWDLSLRHCTIWAQYHLP
ASLESLTLVGAVVEGEFQSGGGAVGLPEGLETLTLLDCTVEFQLHLPSTL
RRVVTFGDDPMAEPGAPAHNATCNAFVHLHSPPPRLVELDLRGCGDMFVL
PAFPASLEVLKLPGRYSAPIAALPASLQQLWLGGRFNSALGPLPRQLRQL
HVVAYEGKTSFNKRLAALPDSLQELLLGTAFTQRLGKLPAALRRLHIDCP
QYTHSLGRCPVSWSS*
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mRNA from alignment at Contig_58:579686..580824-

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9420 ID=mRNA_9420|Name=jgi.p|Trimin1|350205|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1139bp|location=Sequence derived from alignment at Contig_58:579686..580824- (Tribonema minus UTEX_B_3156 )
ATGGCAACAGTAGTGCAGCTTCCTGCTGCTCTGGAGCGCATCAACTTCGA
AAGTTCCGAGCCAAGCTGCCTCCCCATTCTGCTGTGGCCAAACAGCCTCT
GGGACCTGTCCTTGCGGCACTGCACCATCTGGGCGCAGTACCACCTGCCG
GCCTCCCTCGAATCTTTAACGCTGGTGGGTGCGGTGGTGGAGGGAGAGTT
CCAGAGCGGCGGCGGCGCGGTCGGGCTCCCAGAGGGCCTCGAAACACTCA
CACTGCTGGACTGCACGGTCGAGTTTCAGCTCCATCTGCCATCGACGCTG
CGGCGCGTCGTCACGTTCGGCGATGATCCCATGGCGGAGCCAGGGGCGCC
GGCGCACAACGCGACGTGCAACGCTTTCGTGCACCTGCACAGCCCGCCGC
CACGCCTGGTCGAGCTGGACTTACGCGGCTGCGGGGACATGTTTGTGCTG
CCGGCGTTTCCGGCATCGCTGGAGGTTCTCAAGCTGCCGGGCAGGTACAG
CGCGCCCATCGCGGCGCTGCCCGCATCGCTTCAGCAGCTGTGGCTCGGAG
GCAGGTTCAACAGCGCCCTGGGTCCGCTGCCCCGGCAGCTGCGGCAGCTT
CACGTCGTCGCATACGAAGGCAAAACCAGCTTCAACAAGAGGTTAGCCGC
GCTGCCTGACTCGCTGCAGGAGCTGCTGCTCGGCACAGCGTTCACGCAGC
GGCTGGGGAAGCTGCCCGCTGCGCTAAGGCGTCTCCACATCGACTGCCCA
CAGTACACACACAGCCTCGGCCGCTGCCCGGTGAGCTGGTCGAGTTGAAG
TTCAGTGTGGACAACTGCAAGTTCAACCACGTGCTCGGTCAACTGCCGCC
CACACTTCGCGCCCTCACCCTGGGCAGTAGCTTTTCGCAGCCGCTGGGAC
CGCAGCCGGAAGGCCTGCTAGTGCGCAGACGTGATGACTGATAGAGCGTG
CAGCAGCACCAGTAGGCAGAGTACAGCTAGTGTATTGCTGGGTGTTGCAT
GAAGTACCAGTAAGGTGGACATGCAGCTTTCGTAAATGCAGCAGAGATGC
AGGTTATGGTGGAACTAGGATAAATTTGCCGCGAGCCACACGGTGGCGAG
CGCTTTTTCGGTTGTAATATGGCAAGTATTTGGACGGCT
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Coding sequence (CDS) from alignment at Contig_58:579686..580824-

>mRNA_9420 ID=mRNA_9420|Name=jgi.p|Trimin1|350205|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=798bp|location=Sequence derived from alignment at Contig_58:579686..580824- (Tribonema minus UTEX_B_3156 )
ATGGCAACAGTAGTGCAGCTTCCTGCTGCTCTGGAGCGCATCAACTTCGA
AAGTTCCGAGCCAAGCTGCCTCCCCATTCTGCTGTGGCCAAACAGCCTCT
GGGACCTGTCCTTGCGGCACTGCACCATCTGGGCGCAGTACCACCTGCCG
GCCTCCCTCGAATCTTTAACGCTGGTGGGTGCGGTGGTGGAGGGAGAGTT
CCAGAGCGGCGGCGGCGCGGTCGGGCTCCCAGAGGGCCTCGAAACACTCA
CACTGCTGGACTGCACGGTCGAGTTTCAGCTCCATCTGCCATCGACGCTG
CGGCGCGTCGTCACGTTCGGCGATGATCCCATGGCGGAGCCAGGGGCGCC
GGCGCACAACGCGACGTGCAACGCTTTCGTGCACCTGCACAGCCCGCCGC
CACGCCTGGTCGAGCTGGACTTACGCGGCTGCGGGGACATGTTTGTGCTG
CCGGCGTTTCCGGCATCGCTGGAGGTTCTCAAGCTGCCGGGCAGGTACAG
CGCGCCCATCGCGGCGCTGCCCGCATCGCTTCAGCAGCTGTGGCTCGGAG
GCAGGTTCAACAGCGCCCTGGGTCCGCTGCCCCGGCAGCTGCGGCAGCTT
CACGTCGTCGCATACGAAGGCAAAACCAGCTTCAACAAGAGGTTAGCCGC
GCTGCCTGACTCGCTGCAGGAGCTGCTGCTCGGCACAGCGTTCACGCAGC
GGCTGGGGAAGCTGCCCGCTGCGCTAAGGCGTCTCCACATCGACTGCCCA
CAGTACACACACAGCCTCGGCCGCTGCCCGGTGAGCTGGTCGAGTTGA
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