mRNA_9426 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|168561 vs. uniprot
Match: A0A835YSK0_9STRA (Initiator tRNA phosphoribosyl transferase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSK0_9STRA) HSP 1 Score: 563 bits (1451), Expect = 4.610e-203 Identity = 275/275 (100.00%), Postives = 275/275 (100.00%), Query Frame = 1
Query: 1 MADHVLWTEEECEPSVWTEADLAVLQDADFRADGKAPSVGKIARRLQQQSRHDLLNYLRSIQHDSHYITSALQAIRSRPGCTAFPAFANLRNGQWYGPPSAWEGTCYFKSADGHCGQWAFSYTRLNLHVACKAAMAGGCVVVDSTRRGKRFPDALTATVPLWCAVINSTLASIRGPDWDCSLHTPPWLSPSEASQIADRIAPSVAGLGTAADALRAQLGQHLARPLRPLWQAPGVPLSTEEGDLGDMGGLPFVPVICISASEVSSVAFVEQLALL 825
MADHVLWTEEECEPSVWTEADLAVLQDADFRADGKAPSVGKIARRLQQQSRHDLLNYLRSIQHDSHYITSALQAIRSRPGCTAFPAFANLRNGQWYGPPSAWEGTCYFKSADGHCGQWAFSYTRLNLHVACKAAMAGGCVVVDSTRRGKRFPDALTATVPLWCAVINSTLASIRGPDWDCSLHTPPWLSPSEASQIADRIAPSVAGLGTAADALRAQLGQHLARPLRPLWQAPGVPLSTEEGDLGDMGGLPFVPVICISASEVSSVAFVEQLALL
Sbjct: 1 MADHVLWTEEECEPSVWTEADLAVLQDADFRADGKAPSVGKIARRLQQQSRHDLLNYLRSIQHDSHYITSALQAIRSRPGCTAFPAFANLRNGQWYGPPSAWEGTCYFKSADGHCGQWAFSYTRLNLHVACKAAMAGGCVVVDSTRRGKRFPDALTATVPLWCAVINSTLASIRGPDWDCSLHTPPWLSPSEASQIADRIAPSVAGLGTAADALRAQLGQHLARPLRPLWQAPGVPLSTEEGDLGDMGGLPFVPVICISASEVSSVAFVEQLALL 275
BLAST of jgi.p|Trimin1|168561 vs. uniprot
Match: R1FCU2_EMIHU (Rit1_C domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1FCU2_EMIHU) HSP 1 Score: 170 bits (431), Expect = 1.720e-48 Identity = 94/200 (47.00%), Postives = 121/200 (60.50%), Query Frame = 1
Query: 112 SVGKIARRLQQQSRHDLLNYLRSIQHDSHYITSALQAIRSRPGCTAFPAFANLRNGQWYGPPSAWEGTCYFKSADGHCGQWAFSYTRLNLHVACKAAMAGGCVVVDSTRRGKRFPDALTATVPLWCAVINSTLASI---RGPDWDCSLHTPPWLSPSEASQIADRIAPSVAGLGTAA-DALRAQLGQHLARPLRPLWQAP 699
S+ ++ R L ++ R D + +LRSI HD++++ A A+ +P ANLR G WY + G CYFKS DGH G WAFS +R+N+ VA A+ GG +VVDSTR GKRFPD+L+ TVP+WC V+N A + R DWD LH PPW+ PSEASQI RI VA L A A+ A + L PLRP W P
Sbjct: 8 SISRVLRTLHKERRADRIAHLRSIDHDANFVAGAHAAL-GKPAL-----LANLRCGVWYVDQALSAGNCYFKSTDGHAGGWAFSLSRINMQVALAASAHGGAMVVDSTRSGKRFPDSLSKTVPIWCCVVNRACAELSADRRADWDTDLHLPPWVPPSEASQIEARIGGWVAALRRPAMAAVLAGFARALDAPLRPGWLCP 201
BLAST of jgi.p|Trimin1|168561 vs. uniprot
Match: D8RSU0_SELML (Uncharacterized protein (Fragment) n=4 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8RSU0_SELML) HSP 1 Score: 169 bits (427), Expect = 1.940e-45 Identity = 99/229 (43.23%), Postives = 140/229 (61.14%), Query Frame = 1
Query: 112 SVGKIARRLQQQSRHDLLNYLRSIQHDSHYITSALQAIRSRPGCTAFPAFANLRNGQWYGPPSAWEGTCYFKSADGHCGQWAFSYTRLNLHVACKAAMAGGCVVVDSTRRGKRFPDALTATVPLWCAVINSTLASIRGPD----WDCSLHTPPWLSPSEASQIADRIAPSVAGLGTAADALRAQLGQHLARPLRPLWQAPGVPLSTEEGDLGDMGGLPFVPVICISASE 786
S+ KIAR ++++ + L N LRSI D+ ++ ++A+R A P ANLR G WY ++ TCYFKS DGH G W F+ RLN+H+A AA +GGC++VDSTR+GKRFPD+++ T+P+W V+N ++ + PD WDC LH P W+S +E S I R+ V G+ A+ A A L L RPLRPLW + + +E + + G L F PVI +SAS
Sbjct: 15 SIYKIARSIKRKEQ-SLYNALRSIYDDAGFVAE-IRALRP-----ALPLVANLRCGLWYA--RKFDDTCYFKSTDGHTGNWGFNPARLNIHIAAIAARSGGCMIVDSTRKGKRFPDSMSKTIPIWTCVMNRGISMLLDPDKRKSWDCELHLPSWVSETEKSCIQARLDQWV-GVLLASGADLAGLAASLERPLRPLWISQRSLIWLDE--IPEPGSLDFTPVILVSASR 231
BLAST of jgi.p|Trimin1|168561 vs. uniprot
Match: A0A7S2T9V9_9CHLO (Hypothetical protein n=1 Tax=Chloropicon roscoffensis TaxID=1461544 RepID=A0A7S2T9V9_9CHLO) HSP 1 Score: 167 bits (422), Expect = 7.260e-45 Identity = 97/229 (42.36%), Postives = 129/229 (56.33%), Query Frame = 1
Query: 118 GKIARRLQQQSRHDLLNYLRSIQHDSHYITSALQAIRSRPGCTAFPAFANLRNGQWYGPPSAWEGTCYFKSADGHCGQWAFSYTRLNLHVACKAAMAGGCVVVDSTRRG-KRFPDALTATVPLWCAVINSTLASIRGP----DWDCSLHTPPWLSPSEASQIADRIAPSVAGLGTAADALRAQLGQHLARPLRPLWQAPGVPLSTEEGDLGDMGGLPFVPVICISASEV 789
G + R+L+++ R L N LRSI DS ++ + I PG P ANLR G WY P ++G CYFKS DGHCG+W FS+TRLN HVA AA AGG ++VDST+ KRFPD+ TVP+WC V+N +A RG DWD +H P W+ SE S + + L L +L + LA+PLRPLW + P+ + D G FVPV + S++
Sbjct: 10 GNLLRKLKRRERAGLYNVLRSIYEDSLFVRELREDIL--PG---IPVLANLRCGAWYSP--RFDGDCYFKSTDGHCGKWQFSFTRLNAHVARTAAGAGGALLVDSTKSAVKRFPDSFARTVPIWCGVLNRAVAIARGEGDDRDWDREVHLPSWIPDSERSALEPLVEGWSQKLAKTQPGLLEELSEILAKPLRPLWVSDDSPM-WQHVTREDRDGFSFVPVYLLCCSKL 230
BLAST of jgi.p|Trimin1|168561 vs. uniprot
Match: A0A7S1WBG7_ALECA (Hypothetical protein (Fragment) n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1WBG7_ALECA) HSP 1 Score: 160 bits (404), Expect = 8.720e-45 Identity = 95/190 (50.00%), Postives = 116/190 (61.05%), Query Frame = 1
Query: 253 PAFANLRNGQWYGPPSAWEGTCYFKSADGHCGQWAFSYTRLNLHVACKAAMAGGCVVVDSTRRGKRFPDALTATVPLWCAVINSTLAS----IRGPDWDCSLHTPPWLSPSEASQIADRI---APSVAGL--GTAADALRAQLGQHLARPLRPLWQAPGVPLST---EEGDLGDMGGLPFVPVICISASE 786
P ANLR G WY P+A +G+CYFKS DGH G W FS TRLNLHVA A+ GG ++VDSTRRGKRFPD+L TVP+WCAV+N LA RG + C LH PPW+ SE QI ++ A +A L A + L A LG L RPLRPLW +P L+ E L + +PV+CI+AS
Sbjct: 15 PLLANLRAGAWYCQPTALDGSCYFKSTDGHTGHWDFSTTRLNLHVASLASSRGGVLLVDSTRRGKRFPDSLAKTVPIWCAVLNQVLADHSAGSRG-EVGCHLHLPPWVPASERDQIERKLPAWARRLASLVPAQALEELAAGLGTRL-RPLRPLWISPSDDLAACARESAALSET----CLPVVCITASR 198
BLAST of jgi.p|Trimin1|168561 vs. uniprot
Match: I0YZL8_COCSC (Initiator tRNA phosphoribosyl transferase (Fragment) n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YZL8_COCSC) HSP 1 Score: 164 bits (416), Expect = 1.850e-44 Identity = 103/248 (41.53%), Postives = 133/248 (53.63%), Query Frame = 1
Query: 109 PSVGKIARRLQQQSRHDLLNYLRSIQHDSHYITSALQAIRSRPGCTAFPAFANLRNGQWYGPPSAWEGTCYFKSADGHCGQWAFSYTRLNLHVACKAAMAGGCVVVDSTRRGKRFPDALTATVPLWCAVINSTLASIR--------------------GPDWDCSLHTPPWLSPSEASQIADRI---APSVAGLGTAADALRAQLGQHLARPLRPLWQAPGVPLSTEEGDLGDMGGLPFVPVICISAS 783
PSV K+ R L+++ L N + S+ D ++ S ANLR G WY P A GTCYFKS DGH G W FS TRLNLHVA AA GGC++VD+TRRGK FPDA T T+P+W AVIN ++ +R P+WD LH PPW+S +EA+QI+ R+ A + +G AD A L L +PLRPLW + + E + LPF P+I +SAS
Sbjct: 16 PSVNKLLRHLKKEE-SGLYNCINSVIEDVIFVKEIASIYPS------LSLIANLRCGLWYAPDCA--GTCYFKSTDGHYGNWGFSITRLNLHVAHLAACEGGCLIVDATRRGKTFPDAFTKTIPIWAAVINHAVSLVRKQRTDTGAACATDDGRSSPEAPEWDTELHVPPWISANEANQISMRLDGWAQELLAVG--ADV--AGLALALTKPLRPLWVSQRSQIWLNE--VTQPADLPFTPLILVSAS 248
BLAST of jgi.p|Trimin1|168561 vs. uniprot
Match: A0A0L0D870_THETB (Initiator tRNA phosphoribosyl transferase n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0D870_THETB) HSP 1 Score: 162 bits (409), Expect = 5.640e-43 Identity = 107/237 (45.15%), Postives = 131/237 (55.27%), Query Frame = 1
Query: 94 ADGKAPSVGKIARRLQQQSRHDLLNYLRSIQHDSHYITSALQAIRSRPGCTAFPAFANLRNGQWYGPPSAWEGTCYFKSADGHCGQWAFSYTRLNLHVACKAAMAGGCVVVDSTRRGKRFPDALTATVPLWCAVINSTLASIRGPDWD------CSLHTPPWLSPSEASQIADRIAPSVAGLGTAADALRAQLGQHLA-RPLRPLWQAPGVPLSTEEGDLGDMGGLPFVPVICISAS 783
A PS+ RRL H L + SI D+ ++ + + P T P FANLR G WY P A TCYFKS DGH GQWAFS RLN HVA +AA AG ++VD+TRRGK PDAL+ TVPLW AV+N R WD +LHTPP + SEA +A +AP+ L AAD +QL LA +PLR LW A +E L LPF+P+IC+SAS
Sbjct: 8 ATAATPSLSTTLRRLHSAD-HSLAARILSIAADADWVAAVAELA---PHGT--PVFANLRCGAWYAPQGA--PTCYFKSTDGHTGQWAFSLRRLNAHVAIEAAAAGAALIVDATRRGKPLPDALSKTVPLWAAVLN------RAAGWDPAANSHAALHTPPAIPASEAHDMAACVAPAADALAAAADL--SQLTTALAHKPLRVLWVAQTHRNLSEWPALTHPATLPFIPIICVSAS 228
BLAST of jgi.p|Trimin1|168561 vs. uniprot
Match: A0A0D9WR65_9ORYZ (Uncharacterized protein n=1 Tax=Leersia perrieri TaxID=77586 RepID=A0A0D9WR65_9ORYZ) HSP 1 Score: 162 bits (410), Expect = 1.150e-42 Identity = 99/265 (37.36%), Postives = 140/265 (52.83%), Query Frame = 1
Query: 67 AVLQDADFRADGKAP-SVGKIARRLQQQSRHDLLNYLRSIQHDSHYITSALQAIRSRPGCTAFPAFANLRNGQWYGPPSAWEGTCYFKSADGHCGQWAFSYTRLNLHVACKAAMAGGCVVVDSTRRGKRFPDALTATVPLWCAVINSTLASIR--------------------GPDWDCSLHTPPWLSPSEASQIADRIAPSVAGLGTAADALRAQLGQHLARPLRPLWQAPGVPLSTEEGDLGDMGGLPFVPVICISASEVSSV 798
A + D+ A G + S+ K ARR++++ L N LRS+ D+ ++ + A+ A P ANLR G WY PP A TCYFKS DGH G WAFS RLNLH+A A GGC++VDSTRRGKRFPD+++ T+P+WC V+N + R +WD S+H P W+ +E + I RI A + +R+ L L +PLRPLW + + E + ++ F P+I +SAS +V
Sbjct: 4 AAAESPDYAAGGPSTLSIYKAARRIKRRE-STLYNALRSVADDAAFVAE-IAAL-----WPALPLVANLRCGLWYAPPRALAATCYFKSTDGHAGNWAFSTARLNLHLALLAGERGGCIIVDSTRRGKRFPDSMSKTIPIWCCVLNRAIERYRLQTINRSAAVPNRDSERISCSSNWDNSVHLPVWVLDTERNAIEGRIEEWTAQFESCGADIRS-LSLSLQKPLRPLWISQRTRIWLNE--VPELESWDFTPIILVSASASGAV 258
BLAST of jgi.p|Trimin1|168561 vs. uniprot
Match: A0A7S3UNI5_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UNI5_HETAK) HSP 1 Score: 152 bits (384), Expect = 1.590e-42 Identity = 74/123 (60.16%), Postives = 84/123 (68.29%), Query Frame = 1
Query: 142 QQSRHDLLNYLRSIQHDSHYITSALQAIRS---RPGCTAFPAFANLRNGQWYGPPSAWEGTCYFKSADGHCGQWAFSYTRLNLHVACKAAMAGGCVVVDSTRRGKRFPDALTATVPLWCAVIN 501
QQ R + N+ +SIQHDS ++ L RS C F FAN RNG WY P W+G CYFKSADGH G+W FS RLNLHVA AA AGG VVVDSTRRGK PD+LTATVP+WCAV+N
Sbjct: 2 QQERTSIYNHCKSIQHDSEFVVDVLGVYRSWAFEKKCLPFTCFANKRNGVWYAPEEEWDGLCYFKSADGHEGRWTFSQGRLNLHVARAAAEAGGVVVVDSTRRGKDCPDSLTATVPIWCAVLN 124
BLAST of jgi.p|Trimin1|168561 vs. uniprot
Match: A0A2K1L8Q2_PHYPA (Uncharacterized protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1L8Q2_PHYPA) HSP 1 Score: 162 bits (411), Expect = 2.780e-42 Identity = 107/279 (38.35%), Postives = 144/279 (51.61%), Query Frame = 1
Query: 40 PSVWTEADLAVLQDAD---FRADGKAPSVGKIARRLQQQSRHDLLNYLRSIQHDSHYITSALQAIRSRPGCTAFPAFANLRNGQWYGPPSAWEGTCYFKSADGHCGQWAFSYTRLNLHVACKAAMAGGCVVVDSTRRGKRFPDALTATVPLWCAVINSTLASIRGP---------------------------DWDCSLHTPPWLSPSEASQIADRIAPSVAGLGTAADALRAQLGQHLARPLRPLWQAPGVPLSTEEGDLGDMGGLPFVPVICISASE 786
PS EA L+ Q D RA S+ K++R+++Q+ H L N LRSI HDS ++ + A+ R P ANLR G WY + CYFKS DGH G W+F+ TRLNLHVA AA GGC++VD+TR+GKRFPD+++ T+P+W VIN LA +R DWDC LH P W+S +E + I +R+ V L L L Q L +PLR LW + + E + D L F P+ +SAS+
Sbjct: 48 PSCGAEACLSKEQRRDCWGLRAGESMESIYKVSRQIKQKE-HSLYNALRSIYHDSLFVAE-IAALWPR-----LPLLANLRCGLWYS--QHFYDVCYFKSTDGHNGNWSFNVTRLNLHVAELAAQKGGCIIVDATRKGKRFPDSMSKTLPIWACVINRALADLRKSLDENPNHLKPEEDFLDSEENSLRRHSLDWDCQLHLPIWVSETEKNNIVNRLDTWVEDLKNCGANL-IPLAQMLRKPLRTLWVSQKTVIWLNE--IVDTETLDFTPIFLVSASQ 314 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|168561 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_9426 ID=mRNA_9426|Name=jgi.p|Trimin1|168561|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=828bp|location=Sequence derived from alignment at Contig_58:657789..659558- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGGCTGACCACGTGCTCTGGACTGAGGAGGAATGTGAGCCATCTGTCTGback to top protein sequence of jgi.p|Trimin1|168561 >Trimin1|168561|e_gw1.58.33.1 ID=Trimin1|168561|e_gw1.58.33.1|Name=jgi.p|Trimin1|168561|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=276bp MADHVLWTEEECEPSVWTEADLAVLQDADFRADGKAPSVGKIARRLQQQSback to top mRNA from alignment at Contig_58:657789..659558- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_9426 ID=mRNA_9426|Name=jgi.p|Trimin1|168561|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1770bp|location=Sequence derived from alignment at Contig_58:657789..659558- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_58:657789..659558- >mRNA_9426 ID=mRNA_9426|Name=jgi.p|Trimin1|168561|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=828bp|location=Sequence derived from alignment at Contig_58:657789..659558- (Tribonema minus UTEX_B_3156 )back to top |