mRNA_9361 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|168495
Unique NamemRNA_9361
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|168495 vs. uniprot
Match: A0A835YNT2_9STRA (BRCT domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNT2_9STRA)

HSP 1 Score: 160 bits (406), Expect = 3.000e-50
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 1 
Query:    1 PQLQIFRGIRLYFNGRTGERSAHYLAKLVQQHGGGAAPNYAVRKVTYVIAENLNGSKTHKVLHAHGKYLVVHPDW 225
            PQLQIFRGIRLYFNGRTGERSAHYLAKLVQQHGGGAAPNYAVRKVTYVIAENLNGSKTHKVLHAHGKYLVVHPDW
Sbjct:    1 PQLQIFRGIRLYFNGRTGERSAHYLAKLVQQHGGGAAPNYAVRKVTYVIAENLNGSKTHKVLHAHGKYLVVHPDW 75
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BLAST of jgi.p|Trimin1|168495 vs. uniprot
Match: A0A067BX51_SAPPC (BRCT domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067BX51_SAPPC)

HSP 1 Score: 82.8 bits (203), Expect = 2.350e-18
Identity = 35/71 (49.30%), Postives = 52/71 (73.24%), Query Frame = 1 
Query:   13 IFRGIRLYFNGRTGERSAHYLAKLVQQHGGGAAPNYAVRKVTYVIAENLNGSKTHKVLHAHGKYLVVHPDW 225
            IF+G  LYF+GRTG  S++Y+ K+V++HG   +  +   +VT+++AENLNGSKT  +L + GK L VHP+W
Sbjct:   48 IFQGCNLYFDGRTGNVSSYYMTKMVKEHGASVSIMHRKTRVTHIVAENLNGSKTEALLKSRGKILCVHPNW 118
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BLAST of jgi.p|Trimin1|168495 vs. uniprot
Match: A0A484DRF5_BRELC (BRCT domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DRF5_BRELC)

HSP 1 Score: 75.5 bits (184), Expect = 2.550e-15
Identity = 36/74 (48.65%), Postives = 47/74 (63.51%), Query Frame = 1 
Query:    4 QLQIFRGIRLYFNGRTGERSAHYLAKLVQQHGGGAAPNYAVRKVTYVIAENLNGSKTHKVLHAHGKYLVVHPDW 225
            Q  IF+G  + FNGRTG  S++YLAKLVQ+HGG  A      +VT+++  NLNGSK  K+L    K   V P+W
Sbjct:   63 QSDIFKGCHIVFNGRTGNVSSYYLAKLVQEHGGIVAAALTTTRVTHMVGLNLNGSKADKLLKNFSKVKFVSPEW 136
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BLAST of jgi.p|Trimin1|168495 vs. uniprot
Match: A0A0N7L3M4_PLAHL (BRCT domain n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L3M4_PLAHL)

HSP 1 Score: 72.8 bits (177), Expect = 3.710e-14
Identity = 34/69 (49.28%), Postives = 44/69 (63.77%), Query Frame = 1 
Query:   13 IFRGIRLYFNGRTGERSAHYLAKLVQQHGGGAAPNYAVRKVTYVIAENLNGSKTHKVLHAHGKYLVVHP 219
            IF+G R+ FNGRTG  +++YLAKLVQ+HGG         +VT++I  NLNGSK  K L  + K   V P
Sbjct:   69 IFKGCRIVFNGRTGNVTSYYLAKLVQEHGGSVGSTLTTSRVTHMIGSNLNGSKADKALMGNAKVKFVRP 137
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BLAST of jgi.p|Trimin1|168495 vs. uniprot
Match: A0A0G4IYX9_PLABS (BRCT domain-containing protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IYX9_PLABS)

HSP 1 Score: 61.2 bits (147), Expect = 8.280e-10
Identity = 33/74 (44.59%), Postives = 48/74 (64.86%), Query Frame = 1 
Query:   10 QIFRGIRLYFNGRTGERSAHYLAKLVQQHGGGAAPNYAVRKVTYVIAENLNGSKTHKVLHAHGKYLV--VHPDW 225
            Q+F+G+ +YFNGR+GE SA  L   V+  GG  AP  +V+ VT+V+ ENL+  K+ KV+ +  K  V  V P+W
Sbjct:   61 QVFQGVCVYFNGRSGEFSALQLKSFVRLCGGRIAPMLSVKVVTHVVCENLSAIKSAKVVASGPKSRVHFVRPEW 134
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|168495 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A835YNT2_9STRA3.000e-50100.00BRCT domain-containing protein n=1 Tax=Tribonema m... [more]
A0A067BX51_SAPPC2.350e-1849.30BRCT domain-containing protein n=2 Tax=Saprolegnia... [more]
A0A484DRF5_BRELC2.550e-1548.65BRCT domain-containing protein n=1 Tax=Bremia lact... [more]
A0A0N7L3M4_PLAHL3.710e-1449.28BRCT domain n=1 Tax=Plasmopara halstedii TaxID=478... [more]
A0A0G4IYX9_PLABS8.280e-1044.59BRCT domain-containing protein n=1 Tax=Plasmodioph... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_58contigContig_58:75415..75642 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|168495|e_gw1.58.172.1
Max annot lvl4776|Peronosporales
EggNOG OGs2E4UE@1|root,2SBPH@2759|Eukaryota,3QGGJ@4776|Peronosporales
Evalue2.27e-19
Seed ortholog4792.ETI40518
Hectar predicted targeting categoryother localisation
TranscriptId168817
TrackFilteredModels1
ProteinId168495
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|168495gene_9361Tribonema minus UTEX_B_3156 geneContig_58 75415..75642 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_9361_1exon_9361_1Tribonema minus UTEX_B_3156 exonContig_58 75415..75642 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_9361CDS_9361Tribonema minus UTEX_B_3156 CDSContig_58 75415..75642 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|168495Trimin1|168495|e_gw1.58.172.1Tribonema minus UTEX_B_3156 polypeptideContig_58 75415..75642 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_9361 ID=mRNA_9361|Name=jgi.p|Trimin1|168495|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=228bp|location=Sequence derived from alignment at Contig_58:75415..75642- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CCACAATTGCAGATATTCCGCGGCATCAGGCTATACTTTAATGGGCGCAC
GGGCGAGCGCAGCGCGCACTACCTGGCCAAGCTCGTGCAGCAGCACGGCG
GCGGCGCGGCGCCCAACTACGCCGTGCGCAAGGTCACGTACGTCATCGCG
GAGAACCTGAACGGCTCCAAGACGCACAAGGTCCTGCACGCGCACGGGAA
GTACCTGGTCGTGCACCCCGACTGGTGA
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protein sequence of jgi.p|Trimin1|168495

>Trimin1|168495|e_gw1.58.172.1 ID=Trimin1|168495|e_gw1.58.172.1|Name=jgi.p|Trimin1|168495|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=76bp
PQLQIFRGIRLYFNGRTGERSAHYLAKLVQQHGGGAAPNYAVRKVTYVIA
ENLNGSKTHKVLHAHGKYLVVHPDW*
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mRNA from alignment at Contig_58:75415..75642-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9361 ID=mRNA_9361|Name=jgi.p|Trimin1|168495|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=228bp|location=Sequence derived from alignment at Contig_58:75415..75642- (Tribonema minus UTEX_B_3156 )
CCACAATTGCAGATATTCCGCGGCATCAGGCTATACTTTAATGGGCGCAC
GGGCGAGCGCAGCGCGCACTACCTGGCCAAGCTCGTGCAGCAGCACGGCG
GCGGCGCGGCGCCCAACTACGCCGTGCGCAAGGTCACGTACGTCATCGCG
GAGAACCTGAACGGCTCCAAGACGCACAAGGTCCTGCACGCGCACGGGAA
GTACCTGGTCGTGCACCCCGACTGGTGA
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Coding sequence (CDS) from alignment at Contig_58:75415..75642-

>mRNA_9361 ID=mRNA_9361|Name=jgi.p|Trimin1|168495|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=228bp|location=Sequence derived from alignment at Contig_58:75415..75642- (Tribonema minus UTEX_B_3156 )
CCACAATTGCAGATATTCCGCGGCATCAGGCTATACTTTAATGGGCGCAC
GGGCGAGCGCAGCGCGCACTACCTGGCCAAGCTCGTGCAGCAGCACGGCG
GCGGCGCGGCGCCCAACTACGCCGTGCGCAAGGTCACGTACGTCATCGCG
GAGAACCTGAACGGCTCCAAGACGCACAAGGTCCTGCACGCGCACGGGAA
GTACCTGGTCGTGCACCCCGACTGGTGA
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