mRNA_9351 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|168470
Unique NamemRNA_9351
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|168470 vs. uniprot
Match: A0A835YRJ6_9STRA (Ankyrin repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRJ6_9STRA)

HSP 1 Score: 296 bits (759), Expect = 2.090e-100
Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 1 
Query:    1 MFNFLFQGNLGDIIAPIQSPEQQLLIAIQNRQMDKAKAMVCMYACLRNTAVDSGVTPVHMACQAGLQELLRRLAELGGDLAGADNXXXXXXXXXXXXXXXXXXXXXXXXXXXVDARNASRQSPYDLATNHVVRQYLLPLQLKAEASNPSSAAASPYDYPGAQAQXXXXXAAPLPPPSAALEALMQVGVCC 570
            MFNFLFQGNLGDIIAPIQSPEQQLLIAIQNRQMDKAKAMVCMYACLRNTAVDSGVTPVHMACQAGLQELLRRLAELGGDLAGADNXXXXXXXXXXXXXXXXXXXXXXXXXXXVDARNASRQSPYDLATNHVVRQYLLPLQLKAEASNPSSAAASPYDYPGAQAQXXXXXAAPLPPPSAALEALMQVGVCC
Sbjct:    1 MFNFLFQGNLGDIIAPIQSPEQQLLIAIQNRQMDKAKAMVCMYACLRNTAVDSGVTPVHMACQAGLQELLRRLAELGGDLAGADNXXXXXXXXXXXXXXXXXXXXXXXXXXXVDARNASRQSPYDLATNHVVRQYLLPLQLKAEASNPSSAAASPYDYPGAQAQXXXXXAAPLPPPSAALEALMQVGVCC 190
[Close]
BLAST of jgi.p|Trimin1|168470 vs. uniprot
Match: A0A6H5KTC0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTC0_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 2.480e-31
Identity = 95/151 (62.91%), Postives = 115/151 (76.16%), Query Frame = 1 
Query:    1 MFNFLFQGNLGDIIAPIQSPEQQLLIAIQNRQMDKAKAMVCMYACLRNTAVDSGVTPVHMACQAGLQELLRRLAELGGDLAGADNXXXXXXXXXXXXXXXXXXXXXXXXXXXVDARNASRQSPYDLATNHVVRQYLLPLQLKAEASNPSSA 453
            MFNFL QG +G+++AP+QS E QLLIAIQNRQ DK + ++ +     NTA D GV P+HMACQ G   L++RL ELG D+     XXXXXXXXXXXXXXXXXXXXXXXXX  V+ RN+ R + YD+AT+HV+RQ+LLPLQLKAEA NP  A
Sbjct:    1 MFNFLLQGKVGEMMAPVQSQEAQLLIAIQNRQQDKIRELLEVKGVGANTANDRGVRPMHMACQTGNNHLVQRLLELGADIIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPVEQRNSYRLTAYDVATDHVIRQFLLPLQLKAEAGNPDYA 151
[Close]
BLAST of jgi.p|Trimin1|168470 vs. uniprot
Match: D7FP01_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP01_ECTSI)

HSP 1 Score: 119 bits (298), Expect = 6.600e-31
Identity = 87/142 (61.27%), Postives = 107/142 (75.35%), Query Frame = 1 
Query:    1 MFNFLFQGNLGDIIAPIQSPEQQLLIAIQNRQMDKAKAMVCMYACLRNTAVDSGVTPVHMACQAGLQELLRRLAELGGDLAGADNXXXXXXXXXXXXXXXXXXXXXXXXXXXVDARNASRQSPYDLATNHVVRQYLLPLQLK 426
            MFNFL QG +G+++AP+QS E QLLIAIQNRQ DK + ++ +     NTA D GV P+HMACQ G   L++RL ELG D+     XXXXXXXXXXXXXXXXXXXXXXX    V+ RN+ R + YD+AT+HV+RQ+LLPLQLK
Sbjct:    1 MFNFLLQGKVGEMMAPVQSQEAQLLIAIQNRQQDKIRELLEVKGVGANTANDRGVRPMHMACQTGNNHLVQRLLELGADIITXXXXXXXXXXXXXXXXXXXXXXXXXXQGAAVEQRNSHRLTAYDVATDHVIRQFLLPLQLK 142
[Close]
BLAST of jgi.p|Trimin1|168470 vs. uniprot
Match: W7TGZ7_9STRA (Serine threonine-protein phosphatase 6 regulatory n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TGZ7_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 1.360e-18
Identity = 57/148 (38.51%), Postives = 80/148 (54.05%), Query Frame = 1 
Query:    1 MFNFLFQGNLGDIIAPIQSPEQQLLIAIQNRQMDKAKAMVCMYACLRNTAVDSG---VTPVHMACQAGLQELLRRLAELGGDLAGA-DNXXXXXXXXXXXXXXXXXXXXXXXXXXXVDARNASRQSPYDLATNHVVRQYLLPLQLKAE 432
            MF FL QG LG+++AP+++P QQL  AI+  + DKA  +  +   +   A D+G     P+H ACQAG Q ++ +L E+G D   A D                            V  RNA RQ+ YD+A +H+VRQ+LLPLQL+AE
Sbjct:   22 MFAFLSQGPLGELLAPVKAPHQQLHQAIEEHRHDKANQL--LQEGVYFNAPDAGRGDALPIHTACQAGNQTMIDKLMEMGADARSATDRHGNGTLHAAAKGGKLETVKFLLAHGLDVSRRNAYRQTAYDVAESHIVRQFLLPLQLRAE 167
[Close]
BLAST of jgi.p|Trimin1|168470 vs. uniprot
Match: A0A4D9DC57_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DC57_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 4.050e-18
Identity = 56/148 (37.84%), Postives = 80/148 (54.05%), Query Frame = 1 
Query:    1 MFNFLFQGNLGDIIAPIQSPEQQLLIAIQNRQMDKAKAMVCMYACLRNTAVDSG---VTPVHMACQAGLQELLRRLAELGGDLAGA-DNXXXXXXXXXXXXXXXXXXXXXXXXXXXVDARNASRQSPYDLATNHVVRQYLLPLQLKAE 432
            MF FL QG LG+++AP+++P QQL  AI+  + DKA  +  +   +   A D+G     P+H ACQAG Q ++ +L E+G D+  A D                            V  RNA RQ+ YD+A +H+VRQ+LLPLQL+ E
Sbjct:    1 MFAFLSQGPLGELLAPVKAPHQQLHQAIEEHRHDKANQL--LQEGVYFNAPDAGRGDALPIHTACQAGNQMMIDKLMEMGADVRSATDRHGNGTLHAAAKGGKLETVKFLLAHGLDVSRRNAYRQTAYDVAESHIVRQFLLPLQLRTE 146
[Close]
BLAST of jgi.p|Trimin1|168470 vs. uniprot
Match: A0A7S3JRB0_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JRB0_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 1.170e-7
Identity = 42/142 (29.58%), Postives = 70/142 (49.30%), Query Frame = 1 
Query:   22 GNLGDIIAPIQSPEQQLLIAIQNRQMDKAKAMVC---MYACLRNTAVDSGVTPVHMACQAGLQELLRRLAELGGDLAGADNXXXXXXXXXXXXXXXXXXXXXXXXXXX-VDARNASRQSPYDLATNHVVRQYLLPLQLKAEA 435
              +G+++AP+Q+  Q+L I+I+ R   +   ++    + A  +N +VD  +TP+H+AC     + +  L   G D+   D                             + ARNA  Q+PYD+A +  +RQ+LLPLQL+AEA
Sbjct:   14 NRIGEVVAPVQNENQELFISIRRRDWPRTHELLSSPNVDALGKNGSVD--MTPLHVACAEDFVQCVEYLLVNGADVNVRDTRAHETPLHHGARGGHSRVCRLLVERGASLVARNARNQTPYDVAKDLSLRQWLLPLQLRAEA 153
[Close]
BLAST of jgi.p|Trimin1|168470 vs. uniprot
Match: F0WQK7_9STRA (Uncharacterized protein AlNc14C200G8676 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WQK7_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 2.400e-7
Identity = 72/156 (46.15%), Postives = 96/156 (61.54%), Query Frame = 1 
Query:    1 MFNFLFQG----NLGDIIAPIQSPEQQLLIAIQNRQMDKAKAMVCMYAC-LRNTAVDSGVTPVHMACQAGLQELLRRLAELGGDLAGADNXXXXXXXXXXXXXXXXXXXXXXXXXXXVDARNASRQSPYDLATNHVVRQYLLPLQLKAEASNPSSA 453
            MF+FL +     NLGDI+AP  +PE+QL  AI+    +K   ++      L+NT   +G  P+H A   G   ++  L + G D+     XXXXXXXXXXXXXXXXXXXXXXXXXX    RN +RQ+ YD+A    +RQ+LLPLQ + E  N ++A
Sbjct:    1 MFSFLAEKLNVKNLGDILAPSSTPEEQLHAAIEEGMDEKFMRLLDESQLDLKNTLNPAGYLPIHTAAYHGRIRMIECLLDRGVDVNVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPAIRNNTRQTAYDVAKGDQIRQFLLPLQFRHEDLNEAAA 156
[Close]
BLAST of jgi.p|Trimin1|168470 vs. uniprot
Match: A0A8K1CHA8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CHA8_PYTOL)

HSP 1 Score: 57.8 bits (138), Expect = 1.640e-6
Identity = 61/178 (34.27%), Postives = 85/178 (47.75%), Query Frame = 1 
Query:    1 MFNFLFQG----NLGDIIAPIQSPEQQLLIAIQNRQMDKAKAMVCMYACLRNTAVDSGVTPVHMACQAGLQELLRRLAELGGDLAGADNXXXXXXXXXXXXXXXXXXXXXXXXXXXVDARNASRQSPYDLATNHVVRQYLLPLQLKAEASNPSSAAASPYDYPGAQAQXXXXXAAPLP 522
            MF+F+       NLG+++AP  +PEQ+L  AI+    DK  +++  +    +   D G  P+H A   G   +L  L   G D+         XXXXXXXXXXXXXX            RN + ++PYD+A    +RQYLLPLQ + E  N ++    P   P           AP P
Sbjct:    1 MFSFIADKLNVKNLGEMLAPTYTPEQELHAAIEQGMEDKFLSLLDEHNVSPHATNDGGNMPIHTAAYYGRVRMLETLLVRGIDVNTLGPRDNTXXXXXXXXXXXXXXKFLINNNANPAKRNRNGRTPYDIAKGDGLRQYLLPLQFRHEDPNEAATMLPPGITPSVDPMAPRAEIAPPP 178
[Close]
BLAST of jgi.p|Trimin1|168470 vs. uniprot
Match: A0A8J2SL02_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SL02_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 2.180e-6
Identity = 63/149 (42.28%), Postives = 92/149 (61.74%), Query Frame = 1 
Query:   16 FQGNLGDIIAPIQSPEQQLLIAIQNRQMDKAKAMV---CMYACLRNTAVDSGVTPVHMACQAGLQELLRRLAELGGDL-AGADNXXXXXXXXXXXXXXXXXXXXXXXXXXXVDARNASRQSPYDLATNHVVRQYLLPLQLKAEASNPSS 450
            F   +G+++AP++ P Q+L IAI+       + ++          N  + S  TP+H+A +A     +  L + G D+ A   +   XXXXXXXXXXXXXXXXXXXXXXXX   R+  R++ YD+++N  +RQ+LLPLQ++AEA  PSS
Sbjct:   14 FIQRIGEVVAPVEGPAQELQIAIRKHDWPTTQRLLQENFFGGDALNQPLGSDCTPLHLAAEADFVPCVEYLLDEGADVDARTRSTHEXXXXXXXXXXXXXXXXXXXXXXXXXXXRDNMRRTAYDVSSNLALRQWLLPLQMRAEAEEPSS 162
[Close]
BLAST of jgi.p|Trimin1|168470 vs. uniprot
Match: A0A024GRZ8_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GRZ8_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 5.080e-6
Identity = 75/179 (41.90%), Postives = 98/179 (54.75%), Query Frame = 1 
Query:    1 MFNFLFQG----NLGDIIAPIQSPEQQLLIAIQNRQMDKAKAMVC-MYACLRNTAVDSGVTPVHMACQAGLQELLRRLAELGGDLAGADNXXXXXXXXXXXXXXXXXXXXXXXXXXXVDARNASRQSPYDLATNHVVRQYLLPLQLKAEASNPSSAAASPYDYPGAQAQXXXXXAAPLP 522
            MF+FL       NLGDI+AP  SPE+QL  +I+    +K   ++      L N    +G  PVH A   G   ++  L + G D+     XXXXXXXXXXXXXXXXXXXXXXXXX     RN +RQ+ Y++A    +RQ+LLPLQ + E  N ++A   P   P +         AP P
Sbjct:    1 MFSFLADKLNVKNLGDILAPTSSPEEQLHASIEEGIDEKFMRLLDDSQLDLINALNPAGYLPVHTAAYHGRIRMIECLLDRGVDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANPAIRNNTRQTAYEVAKGDYIRQFLLPLQFRHEDPNEAAAYLPPGITPSSDPMERKPEIAPPP 179
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|168470 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A835YRJ6_9STRA2.090e-100100.00Ankyrin repeat-containing domain protein n=1 Tax=T... [more]
A0A6H5KTC0_9PHAE2.480e-3162.91Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D7FP01_ECTSI6.600e-3161.27Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
W7TGZ7_9STRA1.360e-1838.51Serine threonine-protein phosphatase 6 regulatory ... [more]
A0A4D9DC57_9STRA4.050e-1837.84Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S3JRB0_9STRA1.170e-729.58Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
F0WQK7_9STRA2.400e-746.15Uncharacterized protein AlNc14C200G8676 n=1 Tax=Al... [more]
A0A8K1CHA8_PYTOL1.640e-634.27Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A8J2SL02_9STRA2.180e-642.28Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A024GRZ8_9STRA5.080e-641.90Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_58contigContig_58:17676..23078 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|168470|e_gw1.58.152.1
Descriptionspectrin binding
COG categoryI
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0666@1|root,KOG4177@2759|Eukaryota
Evalue1.08e-31
Seed ortholog2880.D7FP01
Hectar predicted targeting categoryother localisation
TranscriptId168792
TrackFilteredModels1
ProteinId168470
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|168470gene_9351Tribonema minus UTEX_B_3156 geneContig_58 17676..23078 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|168470Trimin1|168470|e_gw1.58.152.1Tribonema minus UTEX_B_3156 polypeptideContig_58 17676..23078 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_9351_1exon_9351_1Tribonema minus UTEX_B_3156 exonContig_58 17676..17784 +
exon_9351_2exon_9351_2Tribonema minus UTEX_B_3156 exonContig_58 17850..17896 +
exon_9351_3exon_9351_3Tribonema minus UTEX_B_3156 exonContig_58 19538..19692 +
exon_9351_4exon_9351_4Tribonema minus UTEX_B_3156 exonContig_58 21410..21476 +
exon_9351_5exon_9351_5Tribonema minus UTEX_B_3156 exonContig_58 22884..23078 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_9351CDS_9351Tribonema minus UTEX_B_3156 CDSContig_58 17676..17784 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_9351 ID=mRNA_9351|Name=jgi.p|Trimin1|168470|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=573bp|location=Sequence derived from alignment at Contig_58:17676..23078+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCAACTTTTTGTTCCAGGGTAACCTGGGGGACATCATCGCCCCCAT
CCAGAGCCCGGAGCAGCAGCTCCTGATCGCAATACAGAACAGGCAGATGG
ACAAGGCAAAGGCAATGGTCTGCATGTACGCGTGTCTGCGCAATACAGCT
GTTGATAGCGGCGTTACGCCCGTGCACATGGCGTGCCAGGCGGGGCTGCA
GGAGCTGCTGCGGCGCCTGGCGGAGCTGGGGGGGGACCTGGCGGGCGCGG
ACAACAGCGGCAACACGCCGCTGCACTACGCCGCCAAGGGCGGGCAGATC
GACACCGTCAAGTGGCTGCTGGAGCTAGGCGCGCGCGTGGACGCGCGGAA
CGCATCGCGCCAGTCGCCATACGACCTGGCGACCAATCACGTGGTGCGGC
AGTACCTGCTGCCGCTGCAGCTCAAGGCGGAGGCGTCGAATCCGTCCTCG
GCGGCGGCGTCGCCGTACGACTACCCGGGCGCGCAGGCGCAGCAGCAGCA
GCAGTACGCGGCGCCGCTGCCGCCGCCGTCCGCCGCGCTCGAGGCGCTGA
TGCAGGTGGGGGTTTGCTGCTGA
back to top

protein sequence of jgi.p|Trimin1|168470

>Trimin1|168470|e_gw1.58.152.1 ID=Trimin1|168470|e_gw1.58.152.1|Name=jgi.p|Trimin1|168470|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=191bp
MFNFLFQGNLGDIIAPIQSPEQQLLIAIQNRQMDKAKAMVCMYACLRNTA
VDSGVTPVHMACQAGLQELLRRLAELGGDLAGADNSGNTPLHYAAKGGQI
DTVKWLLELGARVDARNASRQSPYDLATNHVVRQYLLPLQLKAEASNPSS
AAASPYDYPGAQAQQQQQYAAPLPPPSAALEALMQVGVCC*
back to top

mRNA from alignment at Contig_58:17676..23078+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9351 ID=mRNA_9351|Name=jgi.p|Trimin1|168470|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=5403bp|location=Sequence derived from alignment at Contig_58:17676..23078+ (Tribonema minus UTEX_B_3156 )
ATGTTCAACTTTTTGTTCCAGGGTAACCTGGGGGACATCATCGCCCCCAT
CCAGAGCCCGGAGCAGCAGCTCCTGATCGCAATACAGAACAGGCAGATGG
ACAAGGCAAGTCGCTGCTGAAGCCATCAACAAGTGACTGTGTGCATCAAA
ATATCATTGTTATTGTGACGCAAGAGGCAATGGTCTGCATGTACGCGTGT
CTGCGCAATACAGCTGTTGATGTGGCGCTCCTCTCCAGTGCGCGCGCCTG
CAACGTACAGCAACAAGGGCTGCTGTGTGTGTGTTGTGGTCATTGTCATG
ACGTGCCCTCCCATCGTCTCTCATGCAGGTGCAGCAGCTGCTGGAGGTGC
AGAGGGTTCCTGCTAACTGTCGCAACCAGGTGAACGACTTGGCAGTACAA
CGCCGTAAGGCACCAACTACTCAAGCTAGTCTAGTGCAGCCTTGCTGGAG
ATGCCAGTGCCCGCCCTAGCACGTCACTCCTGTGCTGCCGGCAGCTGCAC
AGCGAATTGCACTCGCCGCGTCAGCCATCATTGCGGCTATCCCTACCAAA
GTTCTCGGCTGGTCAAGCGTCTCCTCATGGCCAAACCACTTAGTGAATGC
ATAATCAGCAGAAGTCGATCAGCTCAACCTTTCAATGCCTCTTGCTGGGC
TACCAGGACCGTAGGGTCAAGGGTCTTGAGAACACACCGAGTTGGTTGAC
GGGCTGGCACATGAGCTCTGACAGCCATTACTGCTGCAGCCATAAGCCTG
ATTGCAACACTGAGTGCATCAGCCGCTGCACATTTGTCTTGGCTTCGCGA
GCCACTCTGCTCATTGCAGCTGAACGGACCCCGTTGAACGATCACCACGG
GAAGCGATAGGCGTAGCTGCCGTGCTGTTGCGGTATGGAGCCACCAATGC
ACATTCTGGCATGCGCGACGTGCAGAAGGCAGCCCCCATCTACTTGCGTA
GGGCCTGTCCCGAAGTGCAGCAGGCGCTTCTGTTCGGTGGCAGCGATCAG
CATACGAACGCGCTGCTGCCGGCGTCCAGGCCCGTCAACATGCGCTGCGC
GTTGTGCTCATGGCGTGTGCATATGCATCTCCGCGTATGCTCGTAGGCTC
CCCCATAAGCAGCCGCGTCAGCAGCACCGGCTCGTGCGTATCGTTCAGCT
CTGCGCGTTCCGCCGAGCACTACCCCTGCCCAAACCTATTCTGACAGGCT
AGTTGTGGACATACGTGCACACACTCTCAGCCGCGCCCGACCGCTGCCGC
GCACCGCATCTTGCGCACGCGGCGGAGCGGTGCTGCCGCGGCGTGCGTCC
ACAATCAGGGTTAGGGTTAGGGTTACAGACCCACATGCTACTCCTCAACC
GCACCTCGCCGCCTGGCGCAGCTGCGGCGCCGGTACACACACACGCACAC
ACACACACACACACATCCGTACATGCGCACGCTCCTGCGAATGGCAAGCA
GCGGAGAGTCGCCGCAAGGCGCATTGTACGCGCGCGTGACGGGCCAGGCG
CGCCCGCTGCGGCGCCCGCCCACATCTCCACACTAGGAGTATACACGTAT
ACTACCCCGAAACCACGCATCGGATCCCTCGCGCTCCTCGCGCGCGCGCG
CGGCAGAGCGGCGTGACGCTCGTGCACACATACCCCCTCATGCATACATG
AGGCCCTCACGCACACATACCCCATCACGCATACCTACCCCCTCATGCAT
ACATACCCCCTCACGCGCGCGGCAGAGCGGCGTGACGCCCGTGCACATGG
CGTGCCAGGCGGGGCTCGCGCACGCACATACACACATTGCATATATGCAT
ACATACCCCTGAACCGCGCCCACACTGCGCCTGCTCGCTTGCGTTCGCCG
CGCGCGCGGCAGAGCGGCGTTACGCCCGTGCACATGGCGTGCCAGGCGGG
GCTGCAGGAGCTGCTGCGGCGCCTGGCGGAGCTGGGGGGGGACCTGGCGG
GCGCGGACAACAGCGGCAACACGCCGCTGCACTACGCCGCCAAGGGCGGG
CAGATCGACACCGTCAAGTGAGTCGGCGGCGCGCGGAGTTACACCCAAAG
CGTACAGTAACTGCTGTGTGGTGGCGTGTCTGTTGAAGCAGAGGGCGTCG
AGTGCGTCGGAGGCGCGCGCGTTACAGCCAAAGCTTGCGATGAGAGCGGC
GCGCTGGACGGAGTGCCTCGCCATAGTCTGGTCGACGCGGGGAGGCGACA
ACGCTCCTCAGAGTAGCTGTACTACTGCATGGCCTGTTGAAGCGGGGAGG
CGATGCTCCACACGGTAGGTATGTATTCAGGGCAGGTACTACTGCAGACT
GCAGGGAGGTGGCACTCCTCCACGCGAACGTGCGACCAGGTGCAGAGGCG
GGGGTGCCCCCCCCAGATTACACACTTGCGAGCATCATAGTCTAATGAAG
CTGAGAGCGTTGAGTGAGTGGGAGGCACGCGCGTCGCCGCCACGGTGTGT
GATGCACGTGGCGCGTTGGAGTGCCTCGTCATAGTCTGTTAAAAGTGGGG
AGGTGACGCTCATCAGGGTAGGTAGGTATACTACTGCAGACTGCAGGGAG
GTGACGCTCCTCGTGAACTTGCGACCCGCCGCAGAGGCGGGTGCCCCCCC
CAGACATACACTTGAGAGTGGAAGACGGAAGAGACACGTGCGCGCGCGTG
TGTGAGCCGTTTTCAATCGGTTGCGGTTGCCCTAATGTGCTGGTAGGCGC
AAGCCGCGAATTTGGGTTAGGGTAACCCTGAGAGGGCGGCAGGCCATTGA
GCGCTCTGGCGCTATGGACGGGACTGGACAGCTTGCGCACAGCGCGCGCG
GTTTGGTGCTGGGCACACGGCGTATTATGTGCAGCGCATGGCCGACTTTG
AGGGTGCTGCCCATGTTAGGATTAGGGTTAGGGTTAGGGCAGGGGTTAGG
AATGCGGGGTGAGGGTGAGGGCTAGTCTGCTGCGAGGGCTTGCGGTCTGC
TGCGAGGGCCTGCGCTCTGGCACTGCGGCGTAGGTCAGGCACGCGTAGAG
CTCCAACGACAGAGCTCTGGCGCGCAGACGTCGCACACAAGTATCTGCTG
CAAACGCTGTCAAAAGCAGCACATGTACGCACAGTGTTTTGGAGGGGCAG
CCTGGTCTTCTCTTGAAACGATGAAGCGCGATGCAGATGTGCTGTGTTTG
CCAATTGCCAGCTTGCTTGAAGTTGAACTGGGCCGCCACGTTGAAGTTGA
TCTTGGCTTCACACGCACAAATGGACCATGAACATTTCTACTTTGTCACC
GCTGCAACGCTGGTCCACTTGCGTTGCTGCGCGAACGCTGCGGCCCCATG
GTACTCAGGGTTAGCAGCCAAGAGCTCACAGCGCCTGCTTGGTCAAGGGT
TAGGGTGAGGGTCAGGCGGAGAGTCAGGTCAGGGCTGGGGTTAGGGTTAG
GGTTCAACAGCCCTCATTCGCACCCAGAGGATGGCTGCTCCGCGTGAAGA
GCCGCAGCGACATGAGACGTCATCGGGCAGCAGGAAGGGCCCCGTTGCCC
GCGCAGCGCTGACGAGCAGCGAGCACTTCACGCTGGGCCTCTTGCCCGCG
TCGCATTTGCGCCGCCGCCTCCGCAATACGCCCAAGGCCTGCAGCGCCAT
CCGACGCCGCAAGGCAGTACGAAGCGCCTCGCTGTCCGAATAGCACAGGA
GGCCCCCAGCCTCACCCCCGCACCGCTTTTGCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCTTCTGCCCCCTCGCTGCTGCGCAGGTGGCTGCTGGAGCTA
GGCGCGCGCGTGGACGCGCGGAACGCATCGCGCCAGTCGCCATACGACCT
GGTGAGCAGCGCTCCGCAGCCGCCCCTGCCCGCACGCATGCAGTATCCAT
CAATCTGATCCCTACTTTGCCAGTGTGAGATGAGGGGGCGTGTGCTCTGA
AGCCTGGGTGCGTGCGGCATGCGTTCGTTCGCGCCGTGGACGCGCGGAAC
GCGTCGCGCGAGTCGCCGTACGACCTGGTGAGTGCGCACGCTCGCGCCGC
GGCGGCAGCGCTCTGCTTGTTTGGCCGCGCGGCGCCGCTGCGGCATGTGC
GCCTGCCAGCGAACAGCCTCCATCGTGTACACAGATGGAGCCTGTGCCTG
TGTCGTGACGCCCGTCCGTATGATGCAGAAGACGACGAAACCCAGTCTCA
TCTGTCGCACAAGAAGGAGTGGTGCGCGCGCACGCCGCGGCGGCAGCGCT
CCGCAGCGGCCCCTGTCCGCGCGCACGCGGCAACAGAGATGATCTTCAGC
ACGCGATGATGGGGCTCCGATGAGAAAGAAGCCTGGTTGTTGCATGCGCT
TCTTTTCTCCCGATCCGCACGCACACACGCAGCGCCTCTATTGCAAGGAG
AAAGAAGATGGGCGGAGCGCGCGCGTGCCTCCCCTGCTTGCGTCCTTTCC
AAGTCAAAACCCCAAAACTGAAGTCTGAGGTTCAACTGCAGTTTCTTTGG
CACAAGGTGGGCCACGAAAAGGTCAGCGCCTGCGTTGCGCGCGACCGTGA
GTCCGCTTGCCCGTGGACGAGCAGGTCGCGGCGCTGTTGACACCGGAGAC
TGTGGAGCGGGTCAGGCAGATGGTGCCAGCCCTGCACAAGTTTGATCCGG
ACAACCACGGTAGTGCCATAGGCTGGCGTAGGCTGGCGTAAGCATAGGCT
GGCGTAGGCTGGCACTACGGTGGTTGTCCAGTCCGGATCGTACTTGTGCA
GGGCTGGCACTACCTGCCTGACCCGCTCCACAGTCTCCGGTGTCAAAAGC
GGCGCGGCGCACGCGGGTCCGCCGGTGCGCACGCACGCCAGCACCGCGAG
ACTCTCAGCAGCGGTGAGTTCCGCAACTCCGAGCTGCACCCCGCCTGCCC
CCCCCCCCCCCCCCCCCCTGCGTCCCCCTGTGCGCATTGCTCAGGCGACC
AGTCAGTGGTGCGGCAGTACCTGGTGGGGGTCGCTTGCAGGGGCCGCCAG
TGGCATGCGCAACGCTGCCGCCACTCTCGCTGCCGATCGCTTGCGTGCTG
CCCTCTCTGCGGCTGACACATTCTTGCCACGTCTGCCGCTGCCGCTCCCT
CCCCCCCCTCAACCCCCGCCCCCTGTGTCCCCTTGTGCGCATTGCTCAGG
CGAGGTGCGGCTGCAAATCTTGAGCTCCACGATGCCGTGCTGAGCCCTGC
CCCCCGCCCCCCCAACCCCAACCAACCCCCCCTGCGTCCCCCTGTGCGCA
TCGCTCAGGCGACCAATCACGTGGTGCGGCAGTACCTGCTGCCGCTGCAG
CTCAAGGCGGAGGCGTCGAATCCGTCCTCGGCGGCGGCGTCGCCGTACGA
CTACCCGGGCGCGCAGGCGCAGCAGCAGCAGCAGTACGCGGCGCCGCTGC
CGCCGCCGTCCGCCGCGCTCGAGGCGCTGATGCAGGTGGGGGTTTGCTGC
TGA
back to top

Coding sequence (CDS) from alignment at Contig_58:17676..23078+

>mRNA_9351 ID=mRNA_9351|Name=jgi.p|Trimin1|168470|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=573bp|location=Sequence derived from alignment at Contig_58:17676..23078+ (Tribonema minus UTEX_B_3156 )
ATGTTCAACTTTTTGTTCCAGGGTAACCTGGGGGACATCATCGCCCCCAT
CCAGAGCCCGGAGCAGCAGCTCCTGATCGCAATACAGAACAGGCAGATGG
ACAAGGCAAAGGCAATGGTCTGCATGTACGCGTGTCTGCGCAATACAGCT
GTTGATAGCGGCGTTACGCCCGTGCACATGGCGTGCCAGGCGGGGCTGCA
GGAGCTGCTGCGGCGCCTGGCGGAGCTGGGGGGGGACCTGGCGGGCGCGG
ACAACAGCGGCAACACGCCGCTGCACTACGCCGCCAAGGGCGGGCAGATC
GACACCGTCAAGTGGCTGCTGGAGCTAGGCGCGCGCGTGGACGCGCGGAA
CGCATCGCGCCAGTCGCCATACGACCTGGCGACCAATCACGTGGTGCGGC
AGTACCTGCTGCCGCTGCAGCTCAAGGCGGAGGCGTCGAATCCGTCCTCG
GCGGCGGCGTCGCCGTACGACTACCCGGGCGCGCAGGCGCAGCAGCAGCA
GCAGTACGCGGCGCCGCTGCCGCCGCCGTCCGCCGCGCTCGAGGCGCTGA
TGCAGGTGGGGGTTTGCTGCTGA
back to top