mRNA_11924 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|154041
Unique NamemRNA_11924
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|154041 vs. uniprot
Match: A0A835ZNB0_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZNB0_9STRA)

HSP 1 Score: 489 bits (1258), Expect = 5.340e-175
Identity = 235/235 (100.00%), Postives = 235/235 (100.00%), Query Frame = 1
Query:    1 VAVACVKWGSKYGSAYVNRLARAVAAHLASPPHEFICFTDDAAGIDARRVRTEPLPSEARRLRGWWQKASLFSPQAAQVFAGRRVLYLDLDTVIVGGIGEAVALCSSAFATLSARGMANERRTCGYNSSVMAWQSPPPPPRAADRRGELEGIYTFLVGAAGAVATVTRKFDHWLEMCVEGAVLLQDALPCGYIAEYRSMLPGDSAPCGARIVTFPLQPKPHECGGWVRDAWTRHD 705
            VAVACVKWGSKYGSAYVNRLARAVAAHLASPPHEFICFTDDAAGIDARRVRTEPLPSEARRLRGWWQKASLFSPQAAQVFAGRRVLYLDLDTVIVGGIGEAVALCSSAFATLSARGMANERRTCGYNSSVMAWQSPPPPPRAADRRGELEGIYTFLVGAAGAVATVTRKFDHWLEMCVEGAVLLQDALPCGYIAEYRSMLPGDSAPCGARIVTFPLQPKPHECGGWVRDAWTRHD
Sbjct:    1 VAVACVKWGSKYGSAYVNRLARAVAAHLASPPHEFICFTDDAAGIDARRVRTEPLPSEARRLRGWWQKASLFSPQAAQVFAGRRVLYLDLDTVIVGGIGEAVALCSSAFATLSARGMANERRTCGYNSSVMAWQSPPPPPRAADRRGELEGIYTFLVGAAGAVATVTRKFDHWLEMCVEGAVLLQDALPCGYIAEYRSMLPGDSAPCGARIVTFPLQPKPHECGGWVRDAWTRHD 235          
BLAST of jgi.p|Trimin1|154041 vs. uniprot
Match: A0A024TX51_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TX51_9STRA)

HSP 1 Score: 170 bits (430), Expect = 2.220e-47
Identity = 109/231 (47.19%), Postives = 129/231 (55.84%), Query Frame = 1
Query:    7 VACVKWGSKYGSAYVNRLARAVAAHLASPPHEFICFTDDAAGIDARRVRTEPLPSEARRLRGWWQKASLFSPQAAQVFAGRRVLYLDLDTVIVGGIGEAVALCSSAFATLSARGMANERRTCGYNSSVMAWQSPPPPPRAADRRGELEGIYTFLVGAAGAVATVTRKFDHWLEMCVEGAVLLQDALPCGYIAEYRSMLPGDSAPCGARIVTFPLQPKPHECGG-WVRDAWT 696
            V CVKWG KYG+ YVN+L R VA HL S  + F C TD+A G+ A  +    L   A    GWW KA +FSP  A  + GR +LYLDLD+V+VG + + +AL S  F TL    M NERR  G NSSVMAW         AD   +   IY FL     AVAT   KFDHWLEM ++G  +LQD  P G I EY         P  AR+V FPL+PKPH     WV   WT
Sbjct:  181 VVCVKWGVKYGAEYVNKLHRGVARHLKSVRYTFCCLTDNAVGL-APEIDVRLL---APGWVGWWNKAQVFSP--AFGWTGR-MLYLDLDSVLVGSLDD-LALYSGWFGTLKTDDMENERRIGGINSSVMAWH--------ADTATQT--IYAFLSAHFAAVATCIYKFDHWLEMVLDGYEILQDVYP-GQIVEYAQACQAQVPP-HARLVCFPLEPKPHNATAPWVATEWT 391          
BLAST of jgi.p|Trimin1|154041 vs. uniprot
Match: F0W8U4_9STRA (Uncharacterized protein AlNc14C36G3218 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W8U4_9STRA)

HSP 1 Score: 167 bits (422), Expect = 2.720e-46
Identity = 102/237 (43.04%), Postives = 124/237 (52.32%), Query Frame = 1
Query:    1 VAVACVKWGSKYGSAYVNRLARAVAAHLASPPHEFICFTDDAAGIDARRVRTEPLPSEARRLRGWWQKASLFSPQAAQVFAGRRVLYLDLDTVIVGGIGEAVALCSSAFATLSARGMANERRTCGYNSSVMAWQSPPPPPRAADRRGELEGIYTFLVGAAGAVATVTRKFDHWLEMCVEGAVLLQDALPCGYIAEYRSMLP-GDSAPCGARIVTFPLQPKPHEC-GGWVRDAWTRHD 705
            V++ CVKWG+KYG  YVNRL +AV         EF C TDD+ GID R V   PL      L GWW KA LF    +        +YLDLDTVIV  I   +   SS+   L    M NE R  GYNSSVM W +         R  +LE + T L+     ++    KFDHWLEM V    +LQDALP G I EY+S+       P  A +V FPL PKPH+    W++D W  HD
Sbjct:  161 VSILCVKWGTKYGPEYVNRLYKAVERSTDVCKFEFYCLTDDSDGIDERVVAL-PL---TEGLTGWWNKALLFDRPLSAQLKSEHCVYLDLDTVIVANIDRILQHSSSSLGILKTDQMRNEARMGGYNSSVMIWNT---------RSSDLEQLSTILLRHFQIISRYIYKFDHWLEMMVTQPDILQDALP-GSIVEYKSLDELSPKLPTNASLVCFPLHPKPHDADASWIKDFW--HD 381          
BLAST of jgi.p|Trimin1|154041 vs. uniprot
Match: W4GFR7_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GFR7_9STRA)

HSP 1 Score: 162 bits (411), Expect = 1.600e-44
Identity = 105/234 (44.87%), Postives = 127/234 (54.27%), Query Frame = 1
Query:    1 VAVACVKWGSKYGSAYVNRLARAVAAHLASPPHEFICFTDDAAGIDARRVRTEPLPSEARRLRGWWQKASLFSPQAAQVFAGR-RVLYLDLDTVIVGGIGEAVALCSSAFATLSARGMANERRTCGYNSSVMAWQSPPPPPRAADRRGELEGIYTFLVGAAGAVATVTRKFDHWLEMCVEGAVLLQDALPCGYIAEYRSMLPGDSAPCGARIVTFPLQPKPHECGG-WVRDAWT 696
            + V CVKWG KYG+ YVN+L R VA HL S P  F C TDD AGI A+ +    L  E   + GWW KA +FSP     F  R R+LY DLDTV VG + + +A+ +  F TL    M NERR  G NSSVM W         AD+    E +Y FL      VAT   KFDHWLEM ++   +LQ   P G I EY         P  AR+V FPL+PKPH     WV+  W+
Sbjct:  184 ITVVCVKWGVKYGADYVNKLYRGVARHLKSVPFTFCCLTDDPAGI-AQEINVRQL--ELGWV-GWWNKAQVFSPS----FGWRGRMLYFDLDTVFVGSLDD-LAMYAGWFGTLETDAMENERRVGGINSSVMTWH--------ADKA--TEAMYMFLHTNFAIVATCIYKFDHWLEMVLQRHDILQVQYP-GQIVEYAHECQVQ-VPQNARLVCFPLEPKPHNATAPWVQQEWS 396          
BLAST of jgi.p|Trimin1|154041 vs. uniprot
Match: A0A6G0W623_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W623_9STRA)

HSP 1 Score: 157 bits (397), Expect = 1.540e-42
Identity = 101/234 (43.16%), Postives = 131/234 (55.98%), Query Frame = 1
Query:    1 VAVACVKWGSKYGSAYVNRLARAVAAHLASPPHEFICFTDDAAGIDARRVRTEPLPSEARRLRGWWQKASLFSPQAAQVFAGRRVLYLDLDTVIVGGIGEAVALCSSAFATLSARGMANERRTCGYNSSVMAWQSPPPPPRAADRRGELEGIYTFLVGAAGAVATVTRKFDHWLEMCVEGAV-LLQDA-LPCGYIAEYRSMLPGDSAPCGARIVTFPLQPKPHECGG-WVRDAW 693
            ++V CVKWG KY S YVN+L R V+ +L + P  F C TD+  G++      + +P  +    GWW KA LF+P     + G+ +LYLDLD+VI G + +  A  S +FA L   GM NERR+ G NSS+M W S      AA+   +LE IYTFL     AV +   KFDHWLEM +      LQD  L  G I EY +    +  P  ARIV FPL+PKPH     WV + W
Sbjct:  170 LSVVCVKWGKKYDSEYVNKLFRGVSKYLCAVPFTFYCLTDNPNGLEPDIQTRQLMPGFS----GWWNKAHLFAPHHR--WHGQ-ILYLDLDSVITGSLDD-FAKYSGSFAILKTDGMQNERRSQGVNSSIMMWNS-----SAAE---DLEVIYTFLKANYKAVNSCIYKFDHWLEMLLPSDYHTLQDMELLQGQIVEYAASCQVE-CPSNARIVCFPLEPKPHNAPAPWVAEHW 386          
BLAST of jgi.p|Trimin1|154041 vs. uniprot
Match: A0A7S4E7G6_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E7G6_9STRA)

HSP 1 Score: 155 bits (391), Expect = 7.020e-42
Identity = 103/236 (43.64%), Postives = 126/236 (53.39%), Query Frame = 1
Query:    1 VAVACVKWGSKYGSAYVNRLARAVAAHLASPPHEFICFTDDAAGIDARRVRTEPLPSEARRLRGWWQKASLFSPQAAQVFAGRRVLYLDLDTVIVGGIGEAVALCS-SAFATLSARGMANERRTCGYNSSVMAWQSPPPPPRAADRRGELEGIYTFLVGAAGAVATVTR---KFDHWLEMCVEGAVLLQDALPCGYIAEYRSMLPGDSAPCGARIVTFPLQPKPHECGG-WVRDAW 693
            + V CVKWG+KY + YVN+LAR+   HL       +CFTDD AG+D   V    LP+    ++ WW KA LFS  A        VLYLDLDTV+ G + +  AL S S FATL    M NE R+ GYNSSVMAW +P            L      L+   GA   +T    KFDHWLEM +E A L+      G +AEY S L G  +P    +V FPL PKPHE    WV + W
Sbjct:  153 ITVVCVKWGAKYDATYVNKLARSCRRHLQGMGR-LVCFTDDDAGLDDI-VEARSLPTTT--MKAWWLKAYLFSDTANLTGP---VLYLDLDTVVCGDLSKIAALASGSRFATLGTAAMRNENRSGGYNSSVMAWTAP------------LYSEIWALLNEPGAYEVITNCVYKFDHWLEMVIEDARLVD-----GGVAEYAS-LTGPPSP-QISVVCFPLTPKPHEVSDDWVLENW 362          
BLAST of jgi.p|Trimin1|154041 vs. uniprot
Match: K3WAD1_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WAD1_GLOUD)

HSP 1 Score: 156 bits (395), Expect = 9.670e-42
Identity = 98/246 (39.84%), Postives = 129/246 (52.44%), Query Frame = 1
Query:    1 VAVACVKWGSKYGSAYVNRLARAVAAHL--ASPPHEFICFTDDAAGI--DARRVRTEPLPSEARRLRGWWQKASLFSPQAAQVFAGRRVLYLDLDTVIVGGIGEAVALC--SSAFATLSARGMANERRTCGYNSSVMAWQSPPPPPRAADRRGE---LEGIYTFLVGAAGAVATVTRKFDHWLEMCVEGAVLLQDALPCGYIAEYRSMLPGDSA-----PCGARIVTFPLQPKPHECGG-WVRDAW 693
            V+V CVKWG+KYG+ YVN+L  ++  H    +   +F+C TDDA+GI      VR  PL   A   RGWW K  +FSP  AQ   GR  LY+DLDTVIV  I + +A        A L+   M NE+R  G+NSS+M W++           G+     G+Y FL      +     KFDH+LEM +   + L+D  P   I EY+S+  GD +     P  A IV FPLQPKPH     W+   W
Sbjct:  206 VSVICVKWGTKYGAEYVNKLYHSLMRHHREGALAIDFVCLTDDASGIISSTENVRCLPL---APGWRGWWNKVQVFSPTVAQALYGRTCLYMDLDTVIVDCIDDLLAWTPPEDVMALLTTDHMTNEQRQNGFNSSLMMWRNEAASDNNNTENGKSTSFAGLYRFLHEHFSVINKYIYKFDHYLEMALPRPIFLEDVFPDS-IVEYKSL--GDESASMAPPTNASIVCFPLQPKPHNAKAPWIATHW 445          
BLAST of jgi.p|Trimin1|154041 vs. uniprot
Match: T0QVJ8_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QVJ8_SAPDV)

HSP 1 Score: 154 bits (388), Expect = 3.260e-41
Identity = 100/236 (42.37%), Postives = 125/236 (52.97%), Query Frame = 1
Query:    1 VAVACVKWGSKYGSAYVNRLARAVAAHLASPPHEFICFTDDAAGIDARRVRTEPLPSEARRLRGWWQKASLFSPQAAQVFAGRRVLYLDLDTVIVGGIGEAVALCSSA--FATLSARGMANERRTCGYNSSVMAWQSPPPPPRAADRRGELEGIYTFLVGAAGAVATVTRKFDHWLEMCVEGAVL--LQDALPCGYIAEYRSMLPGDSAPCGARIVTFPLQPKPHECGG-WVRDAW 693
            +++ACVKWG+KYG  YVN+L   +  HLA+P H F C TDDA G+   ++   PL S      GWW KA LF+P      A  RV+Y+DLDTV+VG +     LCS A  F  L    M NERR  G NSSVM W +           G    ++T L   A AV     KFDHWLEM +       LQ   P G+I EY       + P  AR+V FPL+PKPH     W+R+ W
Sbjct:  175 ISIACVKWGTKYGPDYVNKLYLGIQRHLAAPFH-FYCLTDDANGL-LPQILVHPLQSG---FVGWWNKAQLFAPDFP---ATGRVVYIDLDTVLVGDL---TPLCSYAGLFGVLGTDDMRNERRRGGINSSVMIWTA-----------GSHAHVFTLLASHAAAVHQCIYKFDHWLEMVLYERHYDELQLLYP-GHIVEYMQACQ-TTCPGAARLVCFPLEPKPHSAPAPWIREHW 386          
BLAST of jgi.p|Trimin1|154041 vs. uniprot
Match: A0A485LT11_9STRA (Aste57867_25131 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LT11_9STRA)

HSP 1 Score: 153 bits (386), Expect = 7.710e-41
Identity = 101/233 (43.35%), Postives = 125/233 (53.65%), Query Frame = 1
Query:    1 VAVACVKWGSKYGSAYVNRLARAVAAHLASPPHEFICFTDDAAGIDARRVRTEPLPSEARRLRGWWQKASLFSPQAAQVFAGRRVLYLDLDTVIVGGIGEAVALCSSAFATLSARGMANERRTCGYNSSVMAWQSPPPPPRAADRRGELEGIYTFLVGAAGAVATVTRKFDHWLEMCVEGAV-LLQDALPCGYIAEYRSMLPGDSAPCGARIVTFPLQPKPHECGG-WVRDAW 693
            V V CVKWGSKYG  YVN+L R VA +L++    F+C TD+  G+    + T  L S      GWW KA LFSP     + GR +LY+DLDTVI G + + +AL   AF TL    M NERR  G NSSVM W +  P          +E IY FL      V+ V  KFDHWLEM +     +LQD  P   I E+  +   D  P  A++V FPL+PKPH     WV   W
Sbjct:  182 VTVVCVKWGSKYGPDYVNKLYRGVAKYLSTVDFTFVCLTDNPDGL-LPEIETRALESGWS---GWWNKAQLFSPHFQ--WHGR-MLYIDLDTVITGSLVD-LALYDGAFGTLKTDEMQNERRVGGINSSVMCWNAGHP---------SIEIIYMFLQRHFDIVSKVIYKFDHWLEMVLTHDYDVLQDLFPL-QIVEFMQVCQDDIPP-QAKLVCFPLEPKPHMATAPWVAHYW 395          
BLAST of jgi.p|Trimin1|154041 vs. uniprot
Match: A0A8J2WR45_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WR45_9STRA)

HSP 1 Score: 154 bits (389), Expect = 9.110e-41
Identity = 104/237 (43.88%), Postives = 126/237 (53.16%), Query Frame = 1
Query:    1 VAVACVKWGSKYGSAYVNRLARAVAAHLASPPHEFICFTDDAAGIDARRVRTEPLPSEARRLRGWWQKASLFSPQAAQVFAGRRVLYLDLDTVIVGGIGEAVALCS-SAFATLSARGMANERRTCGYNSSVMAWQSPPPPPRAADRRGELEGIYTFLVGAAGAVATVTR---KFDHWLEMCVEGAVLLQDALPCGYIAEYRSMLPGDSAPCGARIVTFPLQPKPHECGGWVRDAWTR 699
            + V CVKWG+KY + YVN+LAR+   HL       +CFTDD AG+D   V    LP+    ++ WW KA LFS  A        VLYLDLDTV+ G + +  AL S S FATL    M NE R+ GYNSSVMAW +P            L      L+   GA   +T    KFDHWLEM +E A L+      G +AEY S L G  +P    +V FPL PKPHE    V D W R
Sbjct:  153 ITVVCVKWGAKYDATYVNKLARSCRRHLQGMGR-LVCFTDDDAGLDDI-VEARSLPTTT--MKAWWLKAYLFSDTANLTGP---VLYLDLDTVVCGDLSKIAALASGSRFATLGTAAMRNENRSGGYNSSVMAWTAP------------LYSEIWALLNEPGAYEVITNCVYKFDHWLEMVIEDARLVD-----GGVAEYAS-LTGPPSP-QISVVCFPLTPKPHE----VSDDWVR 359          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|154041 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZNB0_9STRA5.340e-175100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A024TX51_9STRA2.220e-4747.19Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
F0W8U4_9STRA2.720e-4643.04Uncharacterized protein AlNc14C36G3218 n=1 Tax=Alb... [more]
W4GFR7_9STRA1.600e-4444.87Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A6G0W623_9STRA1.540e-4243.16Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A7S4E7G6_9STRA7.020e-4243.64Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
K3WAD1_GLOUD9.670e-4239.84Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
T0QVJ8_SAPDV3.260e-4142.37Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]
A0A485LT11_9STRA7.710e-4143.35Aste57867_25131 protein n=1 Tax=Aphanomyces stella... [more]
A0A8J2WR45_9STRA9.110e-4143.88Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_111contigContig_111:488061..489272 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|154041|gw1.111.90.1
Descriptionprotein N-acetylglucosaminyltransferase activity
COG categoryO
Max annot lvl2759|Eukaryota
EggNOG OGsCOG3914@1|root,KOG4626@2759|Eukaryota
Evalue3.65e-48
Seed ortholog157072.XP_008872942.1
Hectar predicted targeting categorymitochondrion
TranscriptId154363
TrackFilteredModels1
ProteinId154041
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|154041gene_11924Tribonema minus UTEX_B_3156 geneContig_111 488061..489272 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|154041Trimin1|154041|gw1.111.90.1Tribonema minus UTEX_B_3156 polypeptideContig_111 488061..489272 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_11924_3exon_11924_3Tribonema minus UTEX_B_3156 exonContig_111 488061..488165 -
exon_11924_2exon_11924_2Tribonema minus UTEX_B_3156 exonContig_111 488583..488746 -
exon_11924_1exon_11924_1Tribonema minus UTEX_B_3156 exonContig_111 488837..489272 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_11924CDS_11924Tribonema minus UTEX_B_3156 CDSContig_111 488837..489272 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_11924 ID=mRNA_11924|Name=jgi.p|Trimin1|154041|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=705bp|location=Sequence derived from alignment at Contig_111:488061..489272- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GTGGCGGTCGCCTGCGTCAAGTGGGGCAGCAAGTACGGCTCCGCGTACGT
CAACAGACTGGCGCGCGCCGTCGCCGCGCACCTCGCCTCCCCGCCGCACG
AGTTCATCTGCTTCACAGACGACGCCGCGGGCATAGACGCGCGCCGCGTG
CGCACAGAACCCCTCCCCTCCGAGGCGCGCCGCCTGCGAGGCTGGTGGCA
GAAGGCCTCCCTGTTCTCGCCGCAGGCAGCGCAGGTCTTCGCGGGGCGGC
GCGTCCTGTACCTTGACCTCGACACCGTGATCGTGGGCGGCATCGGCGAG
GCGGTGGCGCTGTGCAGCAGCGCGTTCGCGACGCTCAGCGCGCGCGGCAT
GGCCAACGAGCGGCGCACGTGCGGCTACAACTCGAGCGTCATGGCGTGGC
AGTCGCCGCCGCCGCCGCCGCGCGCCGCCGACCGCCGGGGCGAGCTCGAG
GGTATCTACACGTTTCTCGTGGGCGCGGCGGGCGCGGTGGCGACCGTCAC
ACGCAAGTTCGACCACTGGCTGGAGATGTGCGTGGAGGGCGCGGTGCTGC
TGCAGGACGCGCTCCCGTGCGGTTACATCGCGGAGTACCGCAGCATGCTC
CCGGGCGACAGTGCACCGTGCGGCGCGCGGATCGTAACGTTTCCGCTGCA
GCCCAAGCCGCACGAGTGCGGAGGCTGGGTGCGAGACGCGTGGACGCGCC
ACGAT
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protein sequence of jgi.p|Trimin1|154041

>Trimin1|154041|gw1.111.90.1 ID=Trimin1|154041|gw1.111.90.1|Name=jgi.p|Trimin1|154041|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=235bp
VAVACVKWGSKYGSAYVNRLARAVAAHLASPPHEFICFTDDAAGIDARRV
RTEPLPSEARRLRGWWQKASLFSPQAAQVFAGRRVLYLDLDTVIVGGIGE
AVALCSSAFATLSARGMANERRTCGYNSSVMAWQSPPPPPRAADRRGELE
GIYTFLVGAAGAVATVTRKFDHWLEMCVEGAVLLQDALPCGYIAEYRSML
PGDSAPCGARIVTFPLQPKPHECGGWVRDAWTRHD
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mRNA from alignment at Contig_111:488061..489272-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11924 ID=mRNA_11924|Name=jgi.p|Trimin1|154041|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1212bp|location=Sequence derived from alignment at Contig_111:488061..489272- (Tribonema minus UTEX_B_3156 )
GTGGCGGTCGCCTGCGTCAAGTGGGGCAGCAAGTACGGCTCCGCGTACGT CAACAGACTGGCGCGCGCCGTCGCCGCGCACCTCGCCTCCCCGCCGCACG AGTTCATCTGCTTCACAGACGACGCCGCGGGCATAGACGCGCGCCGCGTG CGCACAGAACCCCTCCCCTCCGAGGCGCGCCGCCTGCGAGGCTGGTGGCA GAAGGCCTCCCTGTTCTCGCCGCAGGCAGCGCAGGTCTTCGCGGGGCGGC GCGTCCTGTACCTTGACCTCGACACCGTGATCGTGGGCGGCATCGGCGAG GCGGTGGCGCTGTGCAGCAGCGCGTTCGCGACGCTCAGCGCGCGCGGCAT GGCCAACGAGCGGCGCACGTGCGGCTACAACTCGAGCGTCATGGCGTGGC AGTCGCCGCCGCCGCCGCCGCGCGCCGCCGACCGCCGTTCGCGGCCGCCG CCATCTGTCACTCAGGCGCGGGAATCGCCAGCTCAAGCAAGTGTGGACGA CCCACAATTGAACGCTGCGTTTGAAGGGGGCGAGCTCGAGGGTATCTACA CGTTTCTCGTGGGCGCGGCGGGCGCGGTGGCGACCGTCACACGCAAGTTC GACCACTGGCTGGAGATGTGCGTGGAGGGCGCGGTGCTGCTGCAGGACGC GCTCCCGTGCGGTTACATCGCGGAGTACCGCAGCATGCTCGTTGGCGGCG CAGCCGCAGCGGAGACAGCGGCGGCGGCGACTTGTGCAGGCACACCAGCA GGCACGCGTCCATTGCCGCCGGGAACTGCGCACGCCGCGCCCGTTGAATG TGCTGCAGTCCGCGATGGTGTGTCAGAGGATGGCTCACCGGGTGCAGGGG TGTCTGCGACTGTTGCGCCGCCGCTGCCGCCAGCACCGGTGGCAGCAGCG GCAACATCCGCTGGACTGGCGCGCACGGCGGGCCTATCCTCGCAGGCAGC GGCGACAGCATCCGGCGCGAGTTGCTTGCGGGCGGCAGCCACAGGCGGCG CGGCCTCCGAAGCGGAGGCAGCAGCTGCGCCCGCACAACAGCACAAGGGC CCTGTGGAGAAGCCAGGGGATGGCGGGCGAGCCACCATTGGGATCATTAG TACGGAGCCGGGCGACAGTGCACCGTGCGGCGCGCGGATCGTAACGTTTC CGCTGCAGCCCAAGCCGCACGAGTGCGGAGGCTGGGTGCGAGACGCGTGG ACGCGCCACGAT
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Coding sequence (CDS) from alignment at Contig_111:488061..489272-

>mRNA_11924 ID=mRNA_11924|Name=jgi.p|Trimin1|154041|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=705bp|location=Sequence derived from alignment at Contig_111:488061..489272- (Tribonema minus UTEX_B_3156 )
GTGGCGGTCGCCTGCGTCAAGTGGGGCAGCAAGTACGGCTCCGCGTACGT
CAACAGACTGGCGCGCGCCGTCGCCGCGCACCTCGCCTCCCCGCCGCACG
AGTTCATCTGCTTCACAGACGACGCCGCGGGCATAGACGCGCGCCGCGTG
CGCACAGAACCCCTCCCCTCCGAGGCGCGCCGCCTGCGAGGCTGGTGGCA
GAAGGCCTCCCTGTTCTCGCCGCAGGCAGCGCAGGTCTTCGCGGGGCGGC
GCGTCCTGTACCTTGACCTCGACACCGTGATCGTGGGCGGCATCGGCGAG
GCGGTGGCGCTGTGCAGCAGCGCGTTCGCGACGCTCAGCGCGCGCGGCAT
GGCCAACGAGCGGCGCACGTGCGGCTACAACTCGAGCGTCATGGCGTGGC
AGTCGCCGCCGCCGCCGCCGCGCGCCGCCGACCGCCGGGGCGAGCTCGAG
GGTATCTACACGTTTCTCGTGGGCGCGGCGGGCGCGGTGGCGACCGTCAC
ACGCAAGTTCGACCACTGGCTGGAGATGTGCGTGGAGGGCGCGGTGCTGC
TGCAGGACGCGCTCCCGTGCGGTTACATCGCGGAGTACCGCAGCATGCTC
CCGGGCGACAGTGCACCGTGCGGCGCGCGGATCGTAACGTTTCCGCTGCA
GCCCAAGCCGCACGAGTGCGGAGGCTGGGTGCGAGACGCGTGGACGCGCC
ACGAT
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