mRNA_9412 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|78177 vs. uniprot
Match: A0A835YRM9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRM9_9STRA) HSP 1 Score: 461 bits (1186), Expect = 3.020e-163 Identity = 231/231 (100.00%), Postives = 231/231 (100.00%), Query Frame = 2
Query: 122 MASATEPSAIGAASDGVNSRRTVAAVERGQTVTLHFVRHAQATHNEAAEKRGREAYSDPAFMDARLTDLGREQCRTLQGRVVSNCEEVQLMVVSPMSRAIDTAMIAFDKVPSHVPWIALECIRERSGNHACDKRRTKTELLQQYPQIDWSKVESDSDVYWDTLGDDRETDEMMEDRAHALFDWIRSRSETNIAIVTHSAFLSVLFNKAVRCGARLQRWFDNAELRTVLMQL 814
MASATEPSAIGAASDGVNSRRTVAAVERGQTVTLHFVRHAQATHNEAAEKRGREAYSDPAFMDARLTDLGREQCRTLQGRVVSNCEEVQLMVVSPMSRAIDTAMIAFDKVPSHVPWIALECIRERSGNHACDKRRTKTELLQQYPQIDWSKVESDSDVYWDTLGDDRETDEMMEDRAHALFDWIRSRSETNIAIVTHSAFLSVLFNKAVRCGARLQRWFDNAELRTVLMQL
Sbjct: 1 MASATEPSAIGAASDGVNSRRTVAAVERGQTVTLHFVRHAQATHNEAAEKRGREAYSDPAFMDARLTDLGREQCRTLQGRVVSNCEEVQLMVVSPMSRAIDTAMIAFDKVPSHVPWIALECIRERSGNHACDKRRTKTELLQQYPQIDWSKVESDSDVYWDTLGDDRETDEMMEDRAHALFDWIRSRSETNIAIVTHSAFLSVLFNKAVRCGARLQRWFDNAELRTVLMQL 231
BLAST of jgi.p|Trimin1|78177 vs. uniprot
Match: A0A836CMC3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMC3_9STRA) HSP 1 Score: 323 bits (827), Expect = 1.610e-108 Identity = 157/230 (68.26%), Postives = 187/230 (81.30%), Query Frame = 2
Query: 125 ASATEPSAIGAASDGVNSRRTVAAVERGQTVTLHFVRHAQATHNEAAEKRGREAYSDPAFMDARLTDLGREQCRTLQGRVVSNCEEVQLMVVSPMSRAIDTAMIAFDKVPSHVPWIALECIRERSGNHACDKRRTKTELLQQYPQIDWSKVESDSDVYWDTLGDDRETDEMMEDRAHALFDWIRSRSETNIAIVTHSAFLSVLFNKAVRCGARLQRWFDNAELRTVLMQL 814
A+ E + IG DG+NS+RT+ AVER VTLHF+RHAQATHN AAEK GR AY D A +DARLTDLGREQ + L + + +E+QLMVVSPMSRA++TA IAF++VPSH+PW+ALEC RER+GNH CDKRRT+TEL + +P IDWS +ESDSD WDTLG+DRETD MM RAH LF+WIR+R ETNIAIVTHSA+LSVLFNKAVRCG LQ WF+NAE+R+ LMQL
Sbjct: 7 AAYNEAADIGECKDGINSKRTLVAVERRNAVTLHFIRHAQATHNAAAEKVGRAAYYDWAHLDARLTDLGREQAQGLGATLGTTIDEIQLMVVSPMSRALETASIAFEQVPSHIPWVALECARERAGNHPCDKRRTRTELKEHFPHIDWSLIESDSDALWDTLGEDRETDGMMVARAHDLFEWIRARPETNIAIVTHSAYLSVLFNKAVRCGEGLQTWFNNAEMRSTLMQL 236
BLAST of jgi.p|Trimin1|78177 vs. uniprot
Match: D8LI64_ECTSI (Catalytic, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LI64_ECTSI) HSP 1 Score: 226 bits (576), Expect = 1.360e-70 Identity = 108/218 (49.54%), Postives = 153/218 (70.18%), Query Frame = 2
Query: 161 SDGVNSRRTVAAVERGQTVTLHFVRHAQATHNEAAEKRGREAYSDPAFMDARLTDLGREQCRTLQGRVVSNCEEVQLMVVSPMSRAIDTAMIAFDKVPSHVPWIALECIRERSGNHACDKRRTKTELLQQYPQIDWSKVESDSDVYWDTLGDDRETDEMMEDRAHALFDWIRSRSETNIAIVTHSAFLSVLFNKAVRCGARLQRWFDNAELRTVLMQL 814
SDG + V V+R + T+HF+RHA+ THNEAA K GR AY+ +DARLTDLG++QC TL+ +E QL+VVSP++RAI TA + D+V VPW+ALEC+RER+G H CD+RR +EL +YP I + ++ + DVY+D+LG++RE +++M DR LF W++ R ETNI +VTHSAFL LFN+A++ +WF+N ELR+V ++L
Sbjct: 13 SDG---HKVVGVVQRSKAKTVHFIRHAEGTHNEAALKEGRAAYAKIEHLDARLTDLGKQQCATLKATKHGIEKEAQLVVVSPLARAIQTATLTIDQVEG-VPWVALECVRERAGAHPCDRRRCVSELKGEYPNISFDAIKDEKDVYFDSLGEEREPNDLMADRGRELFSWLKDRPETNIVVVTHSAFLLCLFNEAMQAAPETAKWFENCELRSVFLEL 226
BLAST of jgi.p|Trimin1|78177 vs. uniprot
Match: D8LI65_ECTSI (Catalytic, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LI65_ECTSI) HSP 1 Score: 209 bits (533), Expect = 4.270e-64 Identity = 105/214 (49.07%), Postives = 141/214 (65.89%), Query Frame = 2
Query: 173 NSRRTVAAVERGQTVTLHFVRHAQATHNEAAEKRGREAYSDPAFMDARLTDLGREQCRTLQGRVVSNCEEVQLMVVSPMSRAIDTAMIAFDKVPSHVPWIALECIRERSGNHACDKRRTKTELLQQYPQIDWSKVESDSDVYWDTLGDDRETDEMMEDRAHALFDWIRSRSETNIAIVTHSAFLSVLFNKAVRCGARLQRWFDNAELRTVLMQL 814
N + V V+R T+HF+RHA+ THNEAA K GR A+S +DARLTDLG+EQC TL+ +E +L+VVSP++RAI+TAM+A D+V VPW+ALEC+RER+G CD+RR +EL +YP I + + D D Y+D+ GD+RET + M R LF W+R R ETNI +VTHS FL LF + + + F N ELR+VL+ L
Sbjct: 14 NGHKVVGVVQRSTAKTVHFLRHAEGTHNEAALKEGRAAFSKIEHLDARLTDLGKEQCATLKAANHGIEKEAELVVVSPLTRAIETAMLAIDQVEG-VPWVALECVRERAGVQPCDRRRCVSELKMEYPNISFDAITDDDDAYFDSQGDERETYDSMAHRGRELFSWLRDRPETNIVVVTHSGFLLSLFKRVMLSPPDTAKDFKNCELRSVLLDL 226
BLAST of jgi.p|Trimin1|78177 vs. uniprot
Match: A0A7S4JBS8_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JBS8_9STRA) HSP 1 Score: 197 bits (500), Expect = 7.080e-59 Identity = 102/197 (51.78%), Postives = 136/197 (69.04%), Query Frame = 2
Query: 218 TLHFVRHAQATHNEAAEKRGREAYSDPAFMDARLTDLGREQCR-TLQGRVVSNCEEVQLMVVSPMSRAIDTAMIAFD-KVPSHVPWIALECIRERSGNHACDKRRTKTELLQQYPQIDWSKVESDSDVYWD-TLGDDRETDEMMEDRAHALFDWIRSRSETNIAIVTHSAFLSVLFNKAVRCGARLQRWFDNAELRT 799
T+HFVRHAQATHN AA++ GR AY DP DARLT+ G +QC L+ S EV L++VSP +RA DTA+ F V V W ALEC+RE+SG H CD RR ++L ++P+I++S +E D DVY + TLG++RETDEM+ RA ++ R E N+ +VTHSAFL VLFN+ V CG+ L+RW++N E+RT
Sbjct: 32 TVHFVRHAQATHNLAAKEEGRIAYMDPTHHDARLTEGGMKQCDGRLREHAKSVAGEVDLVLVSPCTRATDTALRGFGGDVSESVKWYALECLREKSGQHPCDGRRAVSQLKAEFPKINYSLMEDDEDVYGEKTLGEERETDEMVAARARQFLAFLDGRPERNVVVVTHSAFLCVLFNRVVTCGSDLRRWYENCEMRT 228
BLAST of jgi.p|Trimin1|78177 vs. uniprot
Match: A0A6V1S4P3_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1S4P3_HETAK) HSP 1 Score: 177 bits (448), Expect = 8.810e-51 Identity = 95/203 (46.80%), Postives = 126/203 (62.07%), Query Frame = 2
Query: 218 TLHFVRHAQATHNEAAEK-RGREAYSDPAFMDARLTDLGREQCRTLQGRVVS-----NCEEVQLMVVSPMSRAIDTAMIAFDKVPSHVPWIALECIRERSGNHACDKRRTKTELLQQYPQIDWSKVESDSDVYWDTLGDDRETDEMMEDRAHALFDWIRSRSETNIAIVTHSAFLSVLFNKAVRCGARLQRWFDNAELRTVLM 808
T+HFVRHAQA HNE K + R+AY DP F DA LT LG+EQC T + S +L+VVSP+ R + TA +AF + VPW+ALE +RER+G+H CD+RR +++P +D+S V+ + DV W G RE+DE M R+ AL ++ R E NI +VTHSAFL FNK V C L+RWF N E R+V +
Sbjct: 34 TVHFVRHAQALHNEKFNKTKDRKAYQDPRFEDAELTALGKEQCATAKAEWASARGRHGYGPPELVVVSPLRRCLQTATLAFGQYAGQVPWVALEEVRERNGHHPCDRRRPLAHARKEFPHVDFSLVKDEEDVTWGD-GRWRESDEEMAVRSAALLKFLAGRPERNIIVVTHSAFLLCTFNKVVVCEPELRRWFANCERRSVAL 235
BLAST of jgi.p|Trimin1|78177 vs. uniprot
Match: A0A4D9DAJ2_9STRA (Uncharacterized protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DAJ2_9STRA) HSP 1 Score: 173 bits (438), Expect = 3.380e-49 Identity = 94/203 (46.31%), Postives = 124/203 (61.08%), Query Frame = 2
Query: 209 QTVTLHFVRHAQATHNEAAEKRGREAYSDPAFMDARLTDLGREQCRTLQGRVVSNCEEVQLMVVSPMSRAIDTAMIAFDKVPSHVPWIALECIRERSGNHACDKRRTKTELLQQYPQIDWSKVESDSDVYWDTLGDDRETDEMMEDRAHALFDWIRSRSETNIAIVTHSAFLSVLFNKAVRCG-ARLQRWFDNAELRTVLMQL 814
Q T++FVRHA+A HNEA + RGR AY+DP+F+D LT LG QC L+ V + + L+V+SP+ RA+ TA +AFD V WIALE +RER G +ACDKRR + L +YP +D+ K+ + D W RET M +R W+R R E I +VTHSAFLS LF + C + RWF+NAELR V + L
Sbjct: 75 QIKTVYFVRHAEALHNEAFKVRGRAAYADPSFLDPELTKLGVSQCLALKPSVEAIQSSIDLVVISPLRRALMTAALAFDH-RKEVSWIALETVRERIGKNACDKRRRRGVLEAEYPDVDFEKI-GEEDTRW--TEHHRETPAEMAERGLEFLAWLRGRPEDRIGVVTHSAFLSTLFAEVFECADPAMSRWFENAELRAVYLIL 273
BLAST of jgi.p|Trimin1|78177 vs. uniprot
Match: A0A7S2Y325_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y325_9STRA) HSP 1 Score: 172 bits (437), Expect = 4.630e-49 Identity = 84/214 (39.25%), Postives = 133/214 (62.15%), Query Frame = 2
Query: 173 NSRRTVAAVERGQTVTLHFVRHAQATHNEAAEKRGREAYSDPAFMDARLTDLGREQCRTLQG--RVVSNCEEVQLMVVSPMSRAIDTAMIAFDKVPSHVPWIALECIRERSGNHACDKRRTKTELLQQYPQIDWSKVESDSDVYWDTLGDDRETDEMMEDRAHALFDWIRSRSETNIAIVTHSAFLSVLFNKAVRCGARLQRWFDNAELRTVLM 808
+ V A+ G T+HF+RHA+ THN+A+ GR Y + + DARLT+ G+ QCR ++ + + QL++VSP++R ++TA + DKV VPW+ALECIRER + CD+RR+ + +++P +D+S E D W RE++E + R W+ +R ETN+ +VTHSAFL + FN+ ++C ++RWF+N E+R+VL+
Sbjct: 48 DEEHVVVAIPTGNYKTVHFIRHAEGTHNQASALYGRTEYQNWRWEDARLTEHGKRQCREANEAEKLNHHLKGHQLVLVSPLTRCLETAELVVDKVAG-VPWVALECIRERLHGNPCDRRRSINVVAKEFPYVDFSSFEVKPDKLWQE--GPRESNEELAARGREFLKWLEAREETNVVVVTHSAFLDITFNQVLKCDVAMKRWFNNCEIRSVLL 258
BLAST of jgi.p|Trimin1|78177 vs. uniprot
Match: A0A482S1J1_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S1J1_9ARCH) HSP 1 Score: 138 bits (348), Expect = 4.850e-36 Identity = 75/203 (36.95%), Postives = 115/203 (56.65%), Query Frame = 2
Query: 221 LHFVRHAQATHNEAAEKRGREAYSDPAFMDARLTDLGREQCRTLQGRVVSNCEEVQLMVVSPMSRAIDTAMIAFDKVPSHVPWIALECIRERSGNHACDKRRTKTELLQQYPQIDWSKVESDSDVYWD--TLGDDRETDEMMEDRAHALFDWIRSRSETNIAIVTHSAFLSVLFNKAVRCGARLQRW---FDNAELRTVLMQL 814
+HFVRHA+ HN AA Y DA +T+ G +QC+ L ++ QL+VVSPMSR + TA +F + +PW+++ECIRER+G H CDKRR + QQY +D+ + + D + TL RE +E ++ RA DW+ SR E I +V+HS FL +L N+ ++ + + F N E++T +++L
Sbjct: 47 VHFVRHAEGHHNVAARNDPLRGYLRNDLEDAHITEEGLKQCQELSEKMKHVTAHSQLLVVSPMSRTLQTASHSFPHLQHKIPWVSIECIRERTGLHPCDKRRALSVYKQQYTYVDFDHIHHEEDPLFPKYTL---REPEEQVKARAREFLDWLASREEREIVVVSHSNFLRILLNQVLQVELQHEDQGGKFANCEIKTYVLRL 246
BLAST of jgi.p|Trimin1|78177 vs. uniprot
Match: A0A5A8EK01_CAFRO (Uncharacterized protein n=3 Tax=Sar TaxID=2698737 RepID=A0A5A8EK01_CAFRO) HSP 1 Score: 138 bits (348), Expect = 1.220e-35 Identity = 79/202 (39.11%), Postives = 114/202 (56.44%), Query Frame = 2
Query: 221 LHFVRHAQATHNEAAEKRGREAYSDPAFMDARLTDLGREQCRTLQGRVVSNCEEVQLMVVSPMSRAIDTAMIAFDKVPSHVPWIALECIRERSGNHACDKRRTKTELLQQYPQIDWSKVESDSDVYWDTLGDDRETDEMMEDRAHALFDWIRSRSETNIAIVTHSAFLSVLFNKAV------RCGARLQRWFDNAELRTVLM 808
L+ +RH Q HN AA RGR AY DP +DARL +G+EQ L + + +QL+VVSP+ R ++TA AF + VP +A+E +RE G H CDKR +E+ + +P +D+S + +D D + + D RET + +R HA +IRSR E NIA+V+H FL L V R A F N E+R +++
Sbjct: 19 LYLIRHGQGHHNTAARDRGRAAYKDPTLLDARLDHVGKEQANALGDHIRMHRIPIQLVVVSPLRRTLETATQAFG---TSVPMVAVELVREAHGAHPCDKRSPVSEIRKDFPHVDFSFISTDEDTWHND--DRRETIREVAERGHAFLRFIRSRPERNIAVVSHGVFLETLVGGLVLGVVDPRVSAER---FRNCEMRAIVV 212 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|78177 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_9412 ID=mRNA_9412|Name=jgi.p|Trimin1|78177|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=852bp|location=Sequence derived from alignment at Contig_58:481231..484826+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. AGAAGTTTTACTCAGCGGTGGCAAAACCAGAGACTGCGCCTGCAGCAAACback to top protein sequence of jgi.p|Trimin1|78177 >Trimin1|78177|CE78176_53 ID=Trimin1|78177|CE78176_53|Name=jgi.p|Trimin1|78177|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=232bp MASATEPSAIGAASDGVNSRRTVAAVERGQTVTLHFVRHAQATHNEAAEKback to top mRNA from alignment at Contig_58:481231..484826+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_9412 ID=mRNA_9412|Name=jgi.p|Trimin1|78177|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3596bp|location=Sequence derived from alignment at Contig_58:481231..484826+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_58:481231..484826+ >mRNA_9412 ID=mRNA_9412|Name=jgi.p|Trimin1|78177|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=696bp|location=Sequence derived from alignment at Contig_58:481231..484826+ (Tribonema minus UTEX_B_3156 )back to top |