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Homology
BLAST of jgi.p|Trimin1|350151 vs. uniprot
Match: A0A836CBF2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBF2_9STRA) HSP 1 Score: 668 bits (1723), Expect = 5.140e-236 Identity = 527/527 (100.00%), Postives = 527/527 (100.00%), Query Frame = 1
Query: 1 MEGFAQHYGVRAQTIKDYIGRFQFRRRGALVRGDPPRTFMLWHHPDFVRGCDASQIELRGTYSQSPSAALGGGGYAGMSLGRTRSNGARGGGSYAFAAGGADAMEVQYGSFGGHALVRENSSSGGRGGSGGGDGFVCVKQESQGVALNGAGXXXXXXXXXXXXXXXXXXXXTGIPSENNEVEAFVLEQLAHAVRAQVARSGFRRADAAAKRRAAANGIAAIANIAAQMGERVRAHPVATPDAAAALRALTVSLARQLGQVEAALSAWCALSGGANALVARLQGAVAQGVESGAREEKGAXXXXXXXXXIGRTGGGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGDSGXXXXXXXXXXXXXXXXDGREPNPICSGVSSPRSPHTPGKRPRSDGGSGSGDEGGAAKRAATSPSKTPTPSAVTAVGGGGVGVPAAPRAPPDAATXXXXXXXTASAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPIKAAAAPAVTSRHIEEV 1581
MEGFAQHYGVRAQTIKDYIGRFQFRRRGALVRGDPPRTFMLWHHPDFVRGCDASQIELRGTYSQSPSAALGGGGYAGMSLGRTRSNGARGGGSYAFAAGGADAMEVQYGSFGGHALVRENSSSGGRGGSGGGDGFVCVKQESQGVALNGAGXXXXXXXXXXXXXXXXXXXXTGIPSENNEVEAFVLEQLAHAVRAQVARSGFRRADAAAKRRAAANGIAAIANIAAQMGERVRAHPVATPDAAAALRALTVSLARQLGQVEAALSAWCALSGGANALVARLQGAVAQGVESGAREEKGAXXXXXXXXXIGRTGGGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGDSGXXXXXXXXXXXXXXXXDGREPNPICSGVSSPRSPHTPGKRPRSDGGSGSGDEGGAAKRAATSPSKTPTPSAVTAVGGGGVGVPAAPRAPPDAATXXXXXXXTASAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPIKAAAAPAVTSRHIEEV
Sbjct: 1 MEGFAQHYGVRAQTIKDYIGRFQFRRRGALVRGDPPRTFMLWHHPDFVRGCDASQIELRGTYSQSPSAALGGGGYAGMSLGRTRSNGARGGGSYAFAAGGADAMEVQYGSFGGHALVRENSSSGGRGGSGGGDGFVCVKQESQGVALNGAGXXXXXXXXXXXXXXXXXXXXTGIPSENNEVEAFVLEQLAHAVRAQVARSGFRRADAAAKRRAAANGIAAIANIAAQMGERVRAHPVATPDAAAALRALTVSLARQLGQVEAALSAWCALSGGANALVARLQGAVAQGVESGAREEKGAXXXXXXXXXIGRTGGGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGDSGXXXXXXXXXXXXXXXXDGREPNPICSGVSSPRSPHTPGKRPRSDGGSGSGDEGGAAKRAATSPSKTPTPSAVTAVGGGGVGVPAAPRAPPDAATXXXXXXXTASAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPIKAAAAPAVTSRHIEEV 527
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| ProteomeId | Trimin1|350151|estExt_Genemark1.C_Ctg_570067 |
| Hectar predicted targeting category | other localisation |
| TranscriptId | 350473 |
| Track | FilteredModels1 |
| ProteinId | 350151 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_8615 ID=mRNA_8615|Name=jgi.p|Trimin1|350151|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1613bp|location=Sequence derived from alignment at Contig_57:490810..494271+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.
ATGGAGGGCTTCGCGCAGCACTACGGCGTGCGGGCGCAGACCATCAAGGA
CTACATCGGCCGCTTCCAGTTCCGGCGCCGCGGCGCCCTTGTGCGCGGCG
ACCCGCCGCGCACCTTCATGCTCTGGCACCACCCCGACTTTGTGCGCGGC
TGCGACGCCTCGCAGATAGAGCTGCGCGGCACGTACAGCCAGTCGCCATC
AGCAGCGCTCGGCGGGGGGGGGTATGCGGGCATGAGCCTCGGGCGCACAC
GCAGCAACGGCGCGCGCGGCGGCGGCAGTTACGCTTTCGCGGCAGGGGGA
GCAGACGCCATGGAGGTGCAGTACGGCAGCTTTGGAGGGCATGCGCTGGT
CAGGGAGAACAGCAGCAGCGGCGGACGCGGCGGCAGCGGCGGCGGCGATG
GGTTCGTGTGCGTGAAGCAGGAGAGCCAGGGGGTTGCCTTGAATGGAGCT
GGCGGGGGGGGCGGCGGCGGTGGCAGCGGCAGCAGTGGCGGCTGTGGTGG
TAGCGGTGGCAGCACCGGGATACCATCCGAAAACAACGAGGTGGAGGCCT
TCGTACTCGAGCAGCTCGCGCACGCCGTGCGCGCGCAGGTCGCGCGCAGC
GGCTTCCGCCGCGCGGACGCCGCCGCCAAGCGCCGCGCCGCCGCCAACGG
CATCGCCGCGATCGCCAACATCGCGGCGCAGATGGGCGAGCGCGTGCGCG
CGCACCCCGTTGCGACGCCCGACGCCGCCGCCGCGCTGCGCGCCCTCACG
GTGAGCCTCGCGCGCCAGCTCGGGCAGGTGGAGGCAGCGCTCAGCGCGTG
GTGCGCGCTCTCCGGCGGCGCCAACGCGCTCGTCGCGAGGCTCCAGGGCG
CCGTCGCGCAGGGCGTGGAGAGCGGGGCGAGGGAGGAGAAGGGGGCGGGG
GGCGGCGGAGGCGGCGGCGGCGGCATTGGCAGAACCGGCGGCGGCAGCGG
TGACAGCGGCGGCGACAGCGGCATTGGCAGCAGTGGCGGCGGCAGCGGTG
ACGGCGGCGGCGACAGCGGCATTGGCAGCAGTGGCGGCGGCGGCGGCGGT
GGCGACAGCGGCGGCGGCGGCGGTGGCGGCGACGGCAGCAGTGGCGGCAG
CGGCAGCGGCGACGGGCGGGAACCCAATCCTATTTGTAGCGGTGTCTCAA
GCCCTCGCTCGCCTCACACGCCGGGCAAGCGGCCACGCAGCGACGGCGGC
AGCGGCAGCGGCGACGAAGGCGGCGCAGCGAAACGCGCGGCAACGTCACC
ATCTAAAACACCCACACCATCTGCTGTGACGGCAGTTGGCGGCGGTGGCG
TGGGCGTTCCAGCAGCACCTCGTGCGCCGCCAGATGCAGCAACTGCTGCC
GCTGCCGCCGCCGCCACTGCTTCTGCTACCGCCGCGGCCGCTGCGTCCGC
TGCTGCTGCTACCGACGCCGCTGCTGCCGCTGCGGCTACCATCGCTGCTG
CTGCTATTGCTGCTGCCGCCCCTGCCTTCGCTGCAGCCCCTGTCGCTTCT
GCTGCCCCTGTCTCCGCTGCCATGCCTCCCATCAAGGCAGCCGCGGCGCC
GGCAGTGACGAGTCGGCATATTGAAGAAGTGTGATGCGCGAAGTTGAAGG
GTGTGACTCTCCC back to topprotein sequence of jgi.p|Trimin1|350151 >Trimin1|350151|estExt_Genemark1.C_Ctg_570067 ID=Trimin1|350151|estExt_Genemark1.C_Ctg_570067|Name=jgi.p|Trimin1|350151|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=528bp
MEGFAQHYGVRAQTIKDYIGRFQFRRRGALVRGDPPRTFMLWHHPDFVRG
CDASQIELRGTYSQSPSAALGGGGYAGMSLGRTRSNGARGGGSYAFAAGG
ADAMEVQYGSFGGHALVRENSSSGGRGGSGGGDGFVCVKQESQGVALNGA
GGGGGGGGSGSSGGCGGSGGSTGIPSENNEVEAFVLEQLAHAVRAQVARS
GFRRADAAAKRRAAANGIAAIANIAAQMGERVRAHPVATPDAAAALRALT
VSLARQLGQVEAALSAWCALSGGANALVARLQGAVAQGVESGAREEKGAG
GGGGGGGGIGRTGGGSGDSGGDSGIGSSGGGSGDGGGDSGIGSSGGGGGG
GDSGGGGGGGDGSSGGSGSGDGREPNPICSGVSSPRSPHTPGKRPRSDGG
SGSGDEGGAAKRAATSPSKTPTPSAVTAVGGGGVGVPAAPRAPPDAATAA
AAAAATASATAAAAASAAAATDAAAAAAATIAAAAIAAAAPAFAAAPVAS
AAPVSAAMPPIKAAAAPAVTSRHIEEV* back to topmRNA from alignment at Contig_57:490810..494271+ Legend: exonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_8615 ID=mRNA_8615|Name=jgi.p|Trimin1|350151|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3462bp|location=Sequence derived from alignment at Contig_57:490810..494271+ (Tribonema minus UTEX_B_3156 )
ATGGAGGGCTTCGCGCAGCACTACGGCGTGCGGGCGCAGACCATCAAGGA
CTACATCGGCCGCTTCCAGTTCCGGCGCCGCGGCGCCCTTGTGCGCGGCG
ACCCGCCGCGCACCTTCATGCTCTGGCACCACCCCGACTTTGTGCGCGGC
TGCGACGCCTCGCAGATAGAGCTGCGCGGCACGTACAGCCAGTCGCCATC
AGCAGCGCTCGGCGGGGGGGGGTATGCGGGCATGAGCCTCGGGCGCACAC
GCAGCAACGGCGCGCGCGGCGGCGGCAGTTACGCTTTCGCGGCAGGGGGA
GCAGACGCCATGGAGGTGCAGTACGGCAGCTTTGGAGGGCATGCGCTGGT
CAGGGAGAACAGCAGCAGCGGCGGACGCGGCGGCAGCGGCGGCGGCGATG
GGTTCGTGTGCGTGAAGCAGGAGAGCCAGGGGGTTGCCTTGAATGGAGCT
GGCGGGGGGGGCGGCGGCGGTGGCAGCGGCAGCAGTGGCGGCTGTGGTGG
TAGCGGTGGCAGCACCGGGATACCATCCGAAAGTGAGTGCGGTTGCCTCC
AACTTCAACTTGAATATATGCACTTTTGCTGGCCACTGACTCCTGTGGAG
ACGAACAGCAACTTCATGTTTATCAAGCAGGTCGTCTGGGAAGTACTCTT
CTGTGAACCTTTCGGTGTTTACCGCCAGTAGCGGTACTCCTTCTGCAGCC
GATTGTGGCGCCGACACCGTCAACGGTGCACGCGCACACAGAGTCGCTGG
CTGCCGTCGCAGGGGCCGTTTTCGTAAGCAAAGTTGACGTGTTCTTCACA
GATCAAACGAAGAAAGGAAAGGCATTGTGTGTTAGAATTTACCTTTGAGC
GCATGACTCACCCCTTGGCACGGCACGCTCATTGTCGCACATCAGTGACG
CTCCAACGTGAAGTTGCCCCCACGCCCGTTCAGTGCTGGGATTCAGGCTG
CTGGTCCCCTGCACATGCACGTTTCTCGGAACTTCGTCACCATTGAGACC
AGCCGCAGCGCACAGCTCAGCTGAAAGACCAGCTCAAGCGCGCCGTTCTC
TGATCAAACTTCACATTGCTCTAATTGAACTTAACCCTTCACGGCAAGTG
CACGGCGCCATGCAGTTGTTGAGCACAGTGCCACGGTCACTCGCGCGGCG
ACCGTTTCAGGGGCCGAGCCTCGGGAGGCGCGCCCGGCAAGTGGCGCACC
ACCCCTAATTCCCTGTTTGAGGTGCGGCAACGGGATGGAGGTACTGTCCG
CGAACATGAACCTGCGGCGTTTATGTTCGCGGACGGTAACGCCGCAGCAA
GTTCGTGACTGGGAGTTCATGTCCGCGGACGGTGCCTCCATACCGTTGCC
GCATCTCAAATGTGGGAATTAGGGGTGGTGCGCCACTTGCCTGGCGCGCC
TCCCGAGGATCAGCCCCTGAAACGGGCGCCTCGCCCTTGGTAGTGCCGCC
GGCTCGCGCGCCCTGGGTACTAGAGGAAGGGCCGCGGTATCAACATCCAC
GTGCGAGACCCCAGACGACTGGGGCGCCGCGGCAGCAGCAGAGGTTACAG
TTGGCGGGACTGCGCCCCCGCGCGCGCCAGAAGGCGCCTCTGCACCACTT
TCTCGTCCGCTCCTCGCTCTTGTGCTGAGGGTTAGGGTTAGGTTAGGGTT
AGGGTTAGGTTTAGGGGTTAGAACCTACCCCTAACCCTTGTGCTTGCCCC
CTGCAGCCTCAGTCGCCCCCTCCAGACCTTGTGACCTTGGATTGAGGGCC
TTGGCAATACAGCAGGTCAATCACGCAGTCACACAATTGCCCTCCTTCGA
CACGGGCTGCTGAAGTGACTGCTGGTCATTTGGGTCGTGTCCAGCACCGC
AGACGTGGCGCCGCTCATGTTCTCCCACCCCCACATATGTGGATAGGTGT
TTGCAGCAACTTAGAATGTGGACGAAAAAAGTGAAGCTGGAGACAATTTC
ATTTGCATCAAATACGCTTACTGGCCAGATACCCCCACCACTTGCACACA
CACCCCCGCCCGGCGCACGCTGCTCAGACAACAAGGTGGAGGCCTTTGTG
CTGGAGCAGCTCGCGCACGCCGAACTCAGAATGTGAAGAAGCTAGTCAAT
TGCATCAAAGTAGTGCACTCTGGCCGCCACTTGGATACCCCCACAACTTG
TCACCCCCCCCCCCTGTTATGCCCGCTGCTCAGACAACGAGGTGGCCTAC
GTACTGGGCCCGCTCCCTACAAAAAGTGAACATTGCAGCGACCCCAACTC
CTGACCTCAAAGTTCCGTTTTCACGCGTAGCAGCGCGCTGACGTGTGAAC
GCGCCGCCACCCGGATACATACCCCCACAATTTCACGATACCTGCCTTCC
CCCCCCCCCCCCCCCCCGCGCGCTGCCTCAGACAACGAGGTGGAGGCCTT
CGTACTCGAGCAGCTCGCGCACGCCGTGCGCGCGCAGGTCGCGCGCAGCG
GCTTCCGCCGCGCGGACGCCGCCGCCAAGCGCCGCGCCGCCGCCAACGGC
ATCGCCGCGATCGCCAACATCGCGGCGCAGATGGGCGAGCGCGTGCGCGC
GCACCCCGTTGCGACGCCCGACGCCGCCGCCGCGCTGCGCGCCCTCACGG
TGAGCCTCGCGCGCCAGCTCGGGCAGGTGGAGGCAGCGCTCAGCGCGTGG
TGCGCGCTCTCCGGCGGCGCCAACGCGCTCGTCGCGAGGCTCCAGGGCGC
CGTCGCGCAGGGCGTGGAGAGCGGGGCGAGGGAGGAGAAGGGGGCGGGGG
GCGGCGGAGGCGGCGGCGGCGGCATTGGCAGAACCGGCGGCGGCAGCGGT
GACAGCGGCGGCGACAGCGGCATTGGCAGCAGTGGCGGCGGCAGCGGTGA
CGGCGGCGGCGACAGCGGCATTGGCAGCAGTGGCGGCGGCGGCGGCGGTG
GCGACAGCGGCGGCGGCGGCGGTGGCGGCGACGGCAGCAGTGGCGGCAGC
GGCAGCGGCGACGGGCGGGAACCCAATCCTATTTGTAGCGGTGTCTCAAG
CCCTCGCTCGCCTCACACGCCGGGCAAGCGGCCACGCAGCGACGGCGGCA
GCGGCAGCGGCGACGAAGGCGGCGCAGCGAAACGCGCGGCAACGTCACCA
TCTAAAACACCCACACCATCTGCTGTGACGGCAGTTGGCGGCGGTGGCGT
GGGCGTTCCAGCAGCACCTCGTGCGCCGCCAGATGCAGCAACTGCTGCCG
CTGCCGCCGCCGCCACTGCTTCTGCTACCGCCGCGGCCGCTGCGTCCGCT
GCTGCTGCTACCGACGCCGCTGCTGCCGCTGCGGCTACCATCGCTGCTGC
TGCTATTGCTGCTGCCGCCCCTGCCTTCGCTGCAGCCCCTGTCGCTTCTG
CTGCCCCTGTCTCCGCTGCCATGCCTCCCATCAAGGCAGCCGCGGCGCCG
GCAGTGACGAGTCGGCATATTGAAGAAGTGTGATGCGCGAAGTTGAAGGG
TGTGACTCTCCC back to topCoding sequence (CDS) from alignment at Contig_57:490810..494271+ >mRNA_8615 ID=mRNA_8615|Name=jgi.p|Trimin1|350151|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1584bp|location=Sequence derived from alignment at Contig_57:490810..494271+ (Tribonema minus UTEX_B_3156 )
ATGGAGGGCTTCGCGCAGCACTACGGCGTGCGGGCGCAGACCATCAAGGA
CTACATCGGCCGCTTCCAGTTCCGGCGCCGCGGCGCCCTTGTGCGCGGCG
ACCCGCCGCGCACCTTCATGCTCTGGCACCACCCCGACTTTGTGCGCGGC
TGCGACGCCTCGCAGATAGAGCTGCGCGGCACGTACAGCCAGTCGCCATC
AGCAGCGCTCGGCGGGGGGGGGTATGCGGGCATGAGCCTCGGGCGCACAC
GCAGCAACGGCGCGCGCGGCGGCGGCAGTTACGCTTTCGCGGCAGGGGGA
GCAGACGCCATGGAGGTGCAGTACGGCAGCTTTGGAGGGCATGCGCTGGT
CAGGGAGAACAGCAGCAGCGGCGGACGCGGCGGCAGCGGCGGCGGCGATG
GGTTCGTGTGCGTGAAGCAGGAGAGCCAGGGGGTTGCCTTGAATGGAGCT
GGCGGGGGGGGCGGCGGCGGTGGCAGCGGCAGCAGTGGCGGCTGTGGTGG
TAGCGGTGGCAGCACCGGGATACCATCCGAAAACAACGAGGTGGAGGCCT
TCGTACTCGAGCAGCTCGCGCACGCCGTGCGCGCGCAGGTCGCGCGCAGC
GGCTTCCGCCGCGCGGACGCCGCCGCCAAGCGCCGCGCCGCCGCCAACGG
CATCGCCGCGATCGCCAACATCGCGGCGCAGATGGGCGAGCGCGTGCGCG
CGCACCCCGTTGCGACGCCCGACGCCGCCGCCGCGCTGCGCGCCCTCACG
GTGAGCCTCGCGCGCCAGCTCGGGCAGGTGGAGGCAGCGCTCAGCGCGTG
GTGCGCGCTCTCCGGCGGCGCCAACGCGCTCGTCGCGAGGCTCCAGGGCG
CCGTCGCGCAGGGCGTGGAGAGCGGGGCGAGGGAGGAGAAGGGGGCGGGG
GGCGGCGGAGGCGGCGGCGGCGGCATTGGCAGAACCGGCGGCGGCAGCGG
TGACAGCGGCGGCGACAGCGGCATTGGCAGCAGTGGCGGCGGCAGCGGTG
ACGGCGGCGGCGACAGCGGCATTGGCAGCAGTGGCGGCGGCGGCGGCGGT
GGCGACAGCGGCGGCGGCGGCGGTGGCGGCGACGGCAGCAGTGGCGGCAG
CGGCAGCGGCGACGGGCGGGAACCCAATCCTATTTGTAGCGGTGTCTCAA
GCCCTCGCTCGCCTCACACGCCGGGCAAGCGGCCACGCAGCGACGGCGGC
AGCGGCAGCGGCGACGAAGGCGGCGCAGCGAAACGCGCGGCAACGTCACC
ATCTAAAACACCCACACCATCTGCTGTGACGGCAGTTGGCGGCGGTGGCG
TGGGCGTTCCAGCAGCACCTCGTGCGCCGCCAGATGCAGCAACTGCTGCC
GCTGCCGCCGCCGCCACTGCTTCTGCTACCGCCGCGGCCGCTGCGTCCGC
TGCTGCTGCTACCGACGCCGCTGCTGCCGCTGCGGCTACCATCGCTGCTG
CTGCTATTGCTGCTGCCGCCCCTGCCTTCGCTGCAGCCCCTGTCGCTTCT
GCTGCCCCTGTCTCCGCTGCCATGCCTCCCATCAAGGCAGCCGCGGCGCC
GGCAGTGACGAGTCGGCATATTGAAGAAGTGTGA back to top
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