mRNA_8575 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|350132
Unique Name	mRNA_8575
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|350132 vs. uniprot
Match: A0A835YNV5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNV5_9STRA)

HSP 1 Score: 263 bits (673), Expect = 1.120e-87
Identity = 146/148 (98.65%), Postives = 146/148 (98.65%), Query Frame = 1

Query:  172 MRYGSSVEQWKQEEREREXQRRSAGGPTSARRPAGGDRAPPARAASGYNPLQPGSSSVQNYRAALRAAAIVCRNGXXXGANDALAENPAIRERQGPTALNPRTAGARRRSSMSSGSGDRASDAVRQCAGGTTYRPQAGKGGNGGGRPA 615
            MRYGSSVEQWKQEERERE QRRSAGGPTSARRPAGGDRAPPARAASGYNPLQPGSSSVQNYRAALRAAAIVCRNG XXGANDALAENPAIRERQGPTALNPRTAGARRRSSMSSGSGDRASDAVRQCAGGTTYRPQAGKGGNGGGRPA
Sbjct:    1 MRYGSSVEQWKQEERERERQRRSAGGPTSARRPAGGDRAPPARAASGYNPLQPGSSSVQNYRAALRAAAIVCRNGGXXGANDALAENPAIRERQGPTALNPRTAGARRRSSMSSGSGDRASDAVRQCAGGTTYRPQAGKGGNGGGRPA 148

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|350132 vs. uniprot

BLAST of jgi.p|Trimin1|350132 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A835YNV5_9STRA	1.120e-87	98.65	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_57	contig	Contig_57:149509..151691 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|350132\|estExt_Genemark1.C_Ctg_570025
Hectar predicted targeting category	other localisation
TranscriptId	350454
Track	FilteredModels1
ProteinId	350132

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|350132	gene_8575	Tribonema minus UTEX_B_3156	gene	Contig_57 149509..151691 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|350132	Trimin1\|350132\|estExt_Genemark1.C_Ctg_570025	Tribonema minus UTEX_B_3156	polypeptide	Contig_57 149680..151691 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_8575_1	exon_8575_1	Tribonema minus UTEX_B_3156	exon	Contig_57 149509..149696 +
exon_8575_2	exon_8575_2	Tribonema minus UTEX_B_3156	exon	Contig_57 150746..150913 +
exon_8575_3	exon_8575_3	Tribonema minus UTEX_B_3156	exon	Contig_57 151357..151480 +
exon_8575_4	exon_8575_4	Tribonema minus UTEX_B_3156	exon	Contig_57 151554..151691 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR5_8575	UTR5_8575	Tribonema minus UTEX_B_3156	five_prime_UTR	Contig_57 149509..149679 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_8575	CDS_8575	Tribonema minus UTEX_B_3156	CDS	Contig_57 149680..149696 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_57:149509..151691+
coding sequence from alignment at Contig_57:149509..151691+

spliced messenger RNA

>mRNA_8575 ID=mRNA_8575|Name=jgi.p|Trimin1|350132|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=618bp|location=Sequence derived from alignment at Contig_57:149509..151691+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GGCGACAGGACGTGCGCCATAGCATACGGCAACAGGAGTTGAGCATGGGG
CCAGGCAAGCCCCCGAACGTGCCTAACCTCTTGTCGGAGGCCTTCCACGC
AGGCGTATCCCTCCTGCAACAGTATGGCTGGTGGCTTGTGCTGGCGCTGA
TTGTGTGGTACAACGTCAGGGATGCGGTATGGCAGCAGCGTGGAGCAGTG
GAAGCAGGAGGAGCGCGAGAGGGAGCGGCAGCGACGCTCAGCGGGGGGGC
CCACGAGCGCACGGCGGCCGGCAGGGGGGGACAGGGCGCCGCCTGCGCGC
GCCGCGAGCGGTTACAACCCGCTGCAGCCGGGCTCCAGCAGCGTGCAGAA
CTACCGCGCTGCGCTGAGGGCGGCGGCGATTGTGTGCAGGAATGGGGGAG
GGGGGGGCGCAAATGACGCTCTTGCCGAAAACCCGGCGATCCGGGAGCGG
CAGGGGCCGACAGCGCTCAACCCGCGCACCGCGGGGGCGCGGCGGCGCAG
CAGCATGAGCAGCGGCAGCGGCGACAGAGCGTCCGATGCCGTGCGTCAAT
GCGCAGGCGGCACCACGTACCGCCCTCAAGCAGGGAAGGGCGGCAATGGG
GGGGGTAGGCCAGCGTGA

protein sequence of jgi.p|Trimin1|350132

>Trimin1|350132|estExt_Genemark1.C_Ctg_570025 ID=Trimin1|350132|estExt_Genemark1.C_Ctg_570025|Name=jgi.p|Trimin1|350132|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=149bp
MRYGSSVEQWKQEERERERQRRSAGGPTSARRPAGGDRAPPARAASGYNP
LQPGSSSVQNYRAALRAAAIVCRNGGGGGANDALAENPAIRERQGPTALN
PRTAGARRRSSMSSGSGDRASDAVRQCAGGTTYRPQAGKGGNGGGRPA*

mRNA from alignment at Contig_57:149509..151691+

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8575 ID=mRNA_8575|Name=jgi.p|Trimin1|350132|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2183bp|location=Sequence derived from alignment at Contig_57:149509..151691+ (Tribonema minus UTEX_B_3156 )
GGCGACAGGACGTGCGCCATAGCATACGGCAACAGGAGTTGAGCATGGGG
CCAGGCAAGCCCCCGAACGTGCCTAACCTCTTGTCGGAGGCCTTCCACGC
AGGCGTATCCCTCCTGCAACAGTATGGCTGGTGGCTTGTGCTGGCGCTGA
TTGTGTGGTACAACGTCAGGGATGCGGTATGGCAGCAGGTAGCCCATTTA
CAGAGGAGGCGATCTCTGGCTCAAGCCAATCGGCGAGAGAGGCGAGAGGT
TCTGGACCCCCAGCTGTGGAGAATCAGGGAGGAGCAGCAGCGACGAGCTG
AGGAGCGGTGAGCCTGCTGTACTACGCTGTGATAACGATGAAATACGAAG
TCTTCGGGAATTGCTACAGCACTTTGCGCAGCAGCAGGGTTCCTGCCCTG
GCCATCTGTCGGCGAATTTTAAGAACTGGAGGCGCCATTGACTCTGCCGT
CCGCAACATACAGGGTCAGTGGTACACTGACGATGTTGTTGTGCGGTTTG
ACAGCACCAATCATGCTGTGTTCGTGATTCATGTGTAGGCGCATGCCCGA
CCACAATTCTCCTCTGTCCTCGCACCACCCCCGTGGTTCAGCACTGCCAC
CTCCTGCCCTTACCACACGGTCCCTGCAGCTCTCGCTAGCGCGCAACAAC
ATATTTGCTGCGTTCACCTGAAGCAGGCAGTGGCCTCAGCGGCAAGCACC
GCTTCTGCGCAGCTCGACATCCTACGCCAGATGTCCTGTGATGCTCAGAT
GCCTCTGTACATACATACCTTCATGCTTATTATGCATACTTGCTGCTACG
ATGGTGCCCTGCCACGCGGCTTGCGCCTTGTGTGCTTCTCCAGCGGACTA
TGTAGCAGTGCACTCCACCAGTCGCGCACGAGCACCGGGCGGCGTGGCGC
GCGCCGCATTCGCCTTCAGCCGCCCGCAAGCTTCGCTGCAGTGCCGCATT
TCCAGCCCCGGGCTCGTCTGTGGCAGCGGTGTTACAACCAATGATGGGCA
TGCGATGTTCCCAAAGTTGATCTCAATGCAGCGCTGCTCTCCCTACGCTC
GAACATTTCCGCCCAGCTCATCTTGCTGCTCCCGTCACAGCTCACCGCCG
CCCGCCCTCCAACGCCAATCCAAGACCTCGCCTGTCCTAGATGCCGCTAC
TCAGTTGCCAAAGCTCCTGGCAGACCTTAACCATACACCTGATCATCACA
TTCCAACGCCGCCCTCCCCCCCCCCCCCCCCCCCCAGCGTGGAGCAGTGG
AAGCAGGAGGAGCGCGAGAGGGAGCGGCAGCGACGCTCAGCGGGGGGGCC
CACGAGCGCACGGCGGCCGGCAGGGGGGGACAGGGCGCCGCCTGCGCGCG
CCGCGAGCGGTTACAACCCGCTGCAGCCGGGCTCCAGCAGCGTGCAGAAC
TACCGGTGCGTCCGCGTCCGCTGCTCTCGCTGTGTGTGACTGTAGTTATA
CATGCGCGCTCGTGCCAGCGCGCGGTGGTGTTGCGGGGGTGGAGTTGCTT
GCTCTCGCCGCCTGTTGCTAGCGCTATCGACGCGTGTAGCTATGCACGCA
TGCGTGGCGGAAGAGGCTGTGCGAGCGGCGTGCCGCGAGGGCGCCGTGGC
GTTGCGCGCTGCTGCTGAGGGCGCCGTTGCGCCCAGCACCGCCGACGCAG
GCTTGTCACTCCGTGTGCTTTGCACTGCACGACGCATATTCCTCACCGCT
CCTGGTGTGTTGAAGTTGAAATTTTGCAAGTACCCTGGTTCAATGATGCT
TCTGACATGCTCAAACGTGAACCACTGCAGGCCGAGCAACGAGCGCCGGC
GCCCCCCCGGCGGCGGATGACGGTAGGCGCTCGCTGTCGCGGCGGCAGCG
CTGCGCTGAGGGCGGCGGCGATTGTGTGCAGGAATGGGGGAGGGGGGGGC
GCAAATGACGCTCTTGCCGAAAACCCGGCGATCCGGGAGCGGCAGGGGCC
GACAGCGCTCAACCCGCGCACCGTCGCCGCGGCGCGCACAACTCGGAGGG
CGCATTGGTACTGCGCAGTAGCTGCGGCGGCGATGGCGGGCGCAGGCGGG
GGCGCGGCGGCGCAGCAGCATGAGCAGCGGCAGCGGCGACAGAGCGTCCG
ATGCCGTGCGTCAATGCGCAGGCGGCACCACGTACCGCCCTCAAGCAGGG
AAGGGCGGCAATGGGGGGGGTAGGCCAGCGTGA

Coding sequence (CDS) from alignment at Contig_57:149509..151691+

>mRNA_8575 ID=mRNA_8575|Name=jgi.p|Trimin1|350132|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=447bp|location=Sequence derived from alignment at Contig_57:149509..151691+ (Tribonema minus UTEX_B_3156 )
ATGCGGTATGGCAGCAGCGTGGAGCAGTGGAAGCAGGAGGAGCGCGAGAG
GGAGCGGCAGCGACGCTCAGCGGGGGGGCCCACGAGCGCACGGCGGCCGG
CAGGGGGGGACAGGGCGCCGCCTGCGCGCGCCGCGAGCGGTTACAACCCG
CTGCAGCCGGGCTCCAGCAGCGTGCAGAACTACCGCGCTGCGCTGAGGGC
GGCGGCGATTGTGTGCAGGAATGGGGGAGGGGGGGGCGCAAATGACGCTC
TTGCCGAAAACCCGGCGATCCGGGAGCGGCAGGGGCCGACAGCGCTCAAC
CCGCGCACCGCGGGGGCGCGGCGGCGCAGCAGCATGAGCAGCGGCAGCGG
CGACAGAGCGTCCGATGCCGTGCGTCAATGCGCAGGCGGCACCACGTACC
GCCCTCAAGCAGGGAAGGGCGGCAATGGGGGGGGTAGGCCAGCGTGA