Trimin1|350128|estExt_Genemark1.C_Ctg_570020 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|350128
Unique NameTrimin1|350128|estExt_Genemark1.C_Ctg_570020
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length410
Homology
BLAST of jgi.p|Trimin1|350128 vs. uniprot
Match: A0A836CB06_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB06_9STRA)

HSP 1 Score: 746 bits (1925), Expect = 8.690e-271
Identity = 409/409 (100.00%), Postives = 409/409 (100.00%), Query Frame = 0
Query:    1 MESFMSLPPTGDGRTSRKRQQMSATMSAAVAEGEAPDPSHAPLQEIVLEQWLSRKAQRLDVAAAATALTVTQASALGGYGLAGRRPRGRPLAMRCKRKPRRRAVXXXXXXXXXXDTATRSXXXXXXXXADTAAIDAALQQADAHRACISANLAAAGSDGTITLVPHNSKDGQGRIAYFLTRAEARLYEGVNPMQLLLDAHHGGYAIATCSAVRSDGSCSPEVVLDLRLELRRRGGGGSGTDFVCTRDGLETRGSGAVVGRTAGSKAVKAARRDAGEPVERCTAYDHLSTDELVAQAALRCAYTVEGVPVAAAQQHVRAELDARLLPDGRSRLVPGKLKVAVACLMDEAVASAAHAAQDWVMLPGNVAWCPRAGCTRQRLPLWLLVAESRMEEWSAPAGYFLQTSCDGKL 409
            MESFMSLPPTGDGRTSRKRQQMSATMSAAVAEGEAPDPSHAPLQEIVLEQWLSRKAQRLDVAAAATALTVTQASALGGYGLAGRRPRGRPLAMRCKRKPRRRAVXXXXXXXXXXDTATRSXXXXXXXXADTAAIDAALQQADAHRACISANLAAAGSDGTITLVPHNSKDGQGRIAYFLTRAEARLYEGVNPMQLLLDAHHGGYAIATCSAVRSDGSCSPEVVLDLRLELRRRGGGGSGTDFVCTRDGLETRGSGAVVGRTAGSKAVKAARRDAGEPVERCTAYDHLSTDELVAQAALRCAYTVEGVPVAAAQQHVRAELDARLLPDGRSRLVPGKLKVAVACLMDEAVASAAHAAQDWVMLPGNVAWCPRAGCTRQRLPLWLLVAESRMEEWSAPAGYFLQTSCDGKL
Sbjct:    1 MESFMSLPPTGDGRTSRKRQQMSATMSAAVAEGEAPDPSHAPLQEIVLEQWLSRKAQRLDVAAAATALTVTQASALGGYGLAGRRPRGRPLAMRCKRKPRRRAVXXXXXXXXXXDTATRSXXXXXXXXADTAAIDAALQQADAHRACISANLAAAGSDGTITLVPHNSKDGQGRIAYFLTRAEARLYEGVNPMQLLLDAHHGGYAIATCSAVRSDGSCSPEVVLDLRLELRRRGGGGSGTDFVCTRDGLETRGSGAVVGRTAGSKAVKAARRDAGEPVERCTAYDHLSTDELVAQAALRCAYTVEGVPVAAAQQHVRAELDARLLPDGRSRLVPGKLKVAVACLMDEAVASAAHAAQDWVMLPGNVAWCPRAGCTRQRLPLWLLVAESRMEEWSAPAGYFLQTSCDGKL 409          
BLAST of jgi.p|Trimin1|350128 vs. uniprot
Match: A0A836CKF5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKF5_9STRA)

HSP 1 Score: 343 bits (881), Expect = 6.530e-108
Identity = 203/347 (58.50%), Postives = 227/347 (65.42%), Query Frame = 0
Query:  130 DTAAIDAALQQADAHRACISANLAAAGSDGTITLVPHNSKDGQGRIAYFLTRAEA---------------------------RLYEGVNPMQLLLDAHHGGYAIATCSAVRSDGSCSPEVVLDLRLELRRRGGGGSGTDFVCT----------------------------------------RDGLETRGSGAVVGRTAGSKAVKAARRDAGEPVERCTAYDHLSTDELVAQAALRCAYTVEGVPVAAAQQHVRAELDARLLPDGRSRLVPGKLKVAVACLMDEAVASAAHAAQDWVMLPGNVAWCPRAGCTRQRLPLWLLVAESRMEEWSAPAGYFLQTSCDGKL 409
            D   I  A QQAD HRA ISA LAAAG D T+TLVPH +K+G GRIAYFL RAEA                           +LY+GV+P+++LLDA  GGYAIAT SA+R DGSCSPEVVL LRLEL+RRGGGGSGT+FVCT                                        RDGL+TRGSGAVVGRTAGSKAVKA RRDA EPVER TAY  LSTD+LV +AALRCAYTV+G  VAAAQQ VR EL+ARLLPD   R+ P KLKV  A L DEA+A AAH  QDWV+LPG V WCPRAGCTR+  P  LLVAESR+ E SAPAGY L+TS  G +
Sbjct:   81 DARGISDASQQADVHRAIISAKLAAAGPDDTVTLVPHYTKEGAGRIAYFLKRAEAIEFIRKNQDSFGGVPPCMDTVRAAALGQLYDGVDPLKVLLDARQGGYAIATRSALRGDGSCSPEVVLGLRLELQRRGGGGSGTEFVCTWAEIQRFQQFGDGPQSQCVFGPIEEVLCGEPGATVPLHRIRDGLQTRGSGAVVGRTAGSKAVKATRRDAAEPVERSTAYGDLSTDQLVTKAALRCAYTVKGTTVAAAQQRVRVELEARLLPDDDGRITPRKLKVGFARLEDEALAIAAHTEQDWVVLPGGVEWCPRAGCTRRWRPRRLLVAESRVGELSAPAGYTLETSRGGDV 427          
BLAST of jgi.p|Trimin1|350128 vs. uniprot
Match: A0A835YI09_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YI09_9STRA)

HSP 1 Score: 161 bits (407), Expect = 9.020e-45
Identity = 91/120 (75.83%), Postives = 98/120 (81.67%), Query Frame = 0
Query:  130 DTAAIDAALQQADAHRACISANL--AAAGSDGTITLVPHNSKDGQGRIAYFLTRAEARLYEGVNPMQ---LLLDAHHGGYAIATCSAVRSDGSCSPEVVLDLRLELRRRGGGGSGTDFVC 244
            DTAAI AALQQAD +RACISANL  AAAG DGTITLV HN+ +G+GRIAYFLTRA+A  +   N      LLLDA  GGYAIA C A+RSDGSCSPEVVLDLRLELRRRGGGGSGTDFVC
Sbjct:    6 DTAAITAALQQADENRACISANLQDAAAGPDGTITLVAHNNLEGEGRIAYFLTRAKAMEFIRKNHGTFNGLLLDARQGGYAIAACRALRSDGSCSPEVVLDLRLELRRRGGGGSGTDFVC 125          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|350128 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A836CB06_9STRA8.690e-271100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CKF5_9STRA6.530e-10858.50Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YI09_9STRA9.020e-4575.83Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 9..27
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..42

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_57contigContig_57:113961..116159 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|350128mRNA_8569Tribonema minus UTEX_B_3156 mRNAContig_57 113940..116224 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|350128|estExt_Genemark1.C_Ctg_570020 ID=Trimin1|350128|estExt_Genemark1.C_Ctg_570020|Name=jgi.p|Trimin1|350128|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=410bp
MESFMSLPPTGDGRTSRKRQQMSATMSAAVAEGEAPDPSHAPLQEIVLEQ
WLSRKAQRLDVAAAATALTVTQASALGGYGLAGRRPRGRPLAMRCKRKPR
RRAVAAVAAAAARADTATRSAAVAVAAAADTAAIDAALQQADAHRACISA
NLAAAGSDGTITLVPHNSKDGQGRIAYFLTRAEARLYEGVNPMQLLLDAH
HGGYAIATCSAVRSDGSCSPEVVLDLRLELRRRGGGGSGTDFVCTRDGLE
TRGSGAVVGRTAGSKAVKAARRDAGEPVERCTAYDHLSTDELVAQAALRC
AYTVEGVPVAAAQQHVRAELDARLLPDGRSRLVPGKLKVAVACLMDEAVA
SAAHAAQDWVMLPGNVAWCPRAGCTRQRLPLWLLVAESRMEEWSAPAGYF
LQTSCDGKL*
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