mRNA_8569 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|350128 vs. uniprot
Match: A0A836CB06_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB06_9STRA) HSP 1 Score: 745 bits (1924), Expect = 3.770e-270 Identity = 409/409 (100.00%), Postives = 409/409 (100.00%), Query Frame = 1 Query: 22 MESFMSLPPTGDGRTSRKRQQMSATMSAAVAEGEAPDPSHAPLQEIVLEQWLSRKAQRLDVAAAATALTVTQASALGGYGLAGRRPRGRPLAMRCKRKPRRRAVXXXXXXXXXXDTATRSXXXXXXXXADTAAIDAALQQADAHRACISANLAAAGSDGTITLVPHNSKDGQGRIAYFLTRAEARLYEGVNPMQLLLDAHHGGYAIATCSAVRSDGSCSPEVVLDLRLELRRRGGGGSGTDFVCTRDGLETRGSGAVVGRTAGSKAVKAARRDAGEPVERCTAYDHLSTDELVAQAALRCAYTVEGVPVAAAQQHVRAELDARLLPDGRSRLVPGKLKVAVACLMDEAVASAAHAAQDWVMLPGNVAWCPRAGCTRQRLPLWLLVAESRMEEWSAPAGYFLQTSCDGKL 1248 MESFMSLPPTGDGRTSRKRQQMSATMSAAVAEGEAPDPSHAPLQEIVLEQWLSRKAQRLDVAAAATALTVTQASALGGYGLAGRRPRGRPLAMRCKRKPRRRAVXXXXXXXXXXDTATRSXXXXXXXXADTAAIDAALQQADAHRACISANLAAAGSDGTITLVPHNSKDGQGRIAYFLTRAEARLYEGVNPMQLLLDAHHGGYAIATCSAVRSDGSCSPEVVLDLRLELRRRGGGGSGTDFVCTRDGLETRGSGAVVGRTAGSKAVKAARRDAGEPVERCTAYDHLSTDELVAQAALRCAYTVEGVPVAAAQQHVRAELDARLLPDGRSRLVPGKLKVAVACLMDEAVASAAHAAQDWVMLPGNVAWCPRAGCTRQRLPLWLLVAESRMEEWSAPAGYFLQTSCDGKL Sbjct: 1 MESFMSLPPTGDGRTSRKRQQMSATMSAAVAEGEAPDPSHAPLQEIVLEQWLSRKAQRLDVAAAATALTVTQASALGGYGLAGRRPRGRPLAMRCKRKPRRRAVXXXXXXXXXXDTATRSXXXXXXXXADTAAIDAALQQADAHRACISANLAAAGSDGTITLVPHNSKDGQGRIAYFLTRAEARLYEGVNPMQLLLDAHHGGYAIATCSAVRSDGSCSPEVVLDLRLELRRRGGGGSGTDFVCTRDGLETRGSGAVVGRTAGSKAVKAARRDAGEPVERCTAYDHLSTDELVAQAALRCAYTVEGVPVAAAQQHVRAELDARLLPDGRSRLVPGKLKVAVACLMDEAVASAAHAAQDWVMLPGNVAWCPRAGCTRQRLPLWLLVAESRMEEWSAPAGYFLQTSCDGKL 409
BLAST of jgi.p|Trimin1|350128 vs. uniprot
Match: A0A836CKF5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKF5_9STRA) HSP 1 Score: 344 bits (882), Expect = 1.210e-107 Identity = 203/347 (58.50%), Postives = 227/347 (65.42%), Query Frame = 1 Query: 409 DTAAIDAALQQADAHRACISANLAAAGSDGTITLVPHNSKDGQGRIAYFLTRAEA---------------------------RLYEGVNPMQLLLDAHHGGYAIATCSAVRSDGSCSPEVVLDLRLELRRRGGGGSGTDFVCT----------------------------------------RDGLETRGSGAVVGRTAGSKAVKAARRDAGEPVERCTAYDHLSTDELVAQAALRCAYTVEGVPVAAAQQHVRAELDARLLPDGRSRLVPGKLKVAVACLMDEAVASAAHAAQDWVMLPGNVAWCPRAGCTRQRLPLWLLVAESRMEEWSAPAGYFLQTSCDGKL 1248 D I A QQAD HRA ISA LAAAG D T+TLVPH +K+G GRIAYFL RAEA +LY+GV+P+++LLDA GGYAIAT SA+R DGSCSPEVVL LRLEL+RRGGGGSGT+FVCT RDGL+TRGSGAVVGRTAGSKAVKA RRDA EPVER TAY LSTD+LV +AALRCAYTV+G VAAAQQ VR EL+ARLLPD R+ P KLKV A L DEA+A AAH QDWV+LPG V WCPRAGCTR+ P LLVAESR+ E SAPAGY L+TS G + Sbjct: 81 DARGISDASQQADVHRAIISAKLAAAGPDDTVTLVPHYTKEGAGRIAYFLKRAEAIEFIRKNQDSFGGVPPCMDTVRAAALGQLYDGVDPLKVLLDARQGGYAIATRSALRGDGSCSPEVVLGLRLELQRRGGGGSGTEFVCTWAEIQRFQQFGDGPQSQCVFGPIEEVLCGEPGATVPLHRIRDGLQTRGSGAVVGRTAGSKAVKATRRDAAEPVERSTAYGDLSTDQLVTKAALRCAYTVKGTTVAAAQQRVRVELEARLLPDDDGRITPRKLKVGFARLEDEALAIAAHTEQDWVVLPGGVEWCPRAGCTRRWRPRRLLVAESRVGELSAPAGYTLETSRGGDV 427
BLAST of jgi.p|Trimin1|350128 vs. uniprot
Match: A0A835YI09_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YI09_9STRA) HSP 1 Score: 161 bits (407), Expect = 1.680e-44 Identity = 91/120 (75.83%), Postives = 98/120 (81.67%), Query Frame = 1 Query: 409 DTAAIDAALQQADAHRACISANL--AAAGSDGTITLVPHNSKDGQGRIAYFLTRAEARLYEGVNPMQ---LLLDAHHGGYAIATCSAVRSDGSCSPEVVLDLRLELRRRGGGGSGTDFVC 753 DTAAI AALQQAD +RACISANL AAAG DGTITLV HN+ +G+GRIAYFLTRA+A + N LLLDA GGYAIA C A+RSDGSCSPEVVLDLRLELRRRGGGGSGTDFVC Sbjct: 6 DTAAITAALQQADENRACISANLQDAAAGPDGTITLVAHNNLEGEGRIAYFLTRAKAMEFIRKNHGTFNGLLLDARQGGYAIAACRALRSDGSCSPEVVLDLRLELRRRGGGGSGTDFVC 125
BLAST of jgi.p|Trimin1|350128 vs. uniprot
Match: A0A835ZEI0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEI0_9STRA) HSP 1 Score: 95.9 bits (237), Expect = 1.020e-17 Identity = 55/84 (65.48%), Postives = 60/84 (71.43%), Query Frame = -3 Query: 994 LAVAAGLQEVACRR*PLLHPALRHEQPERQPLTRAAGTWAPCHVARQHHPVLRRVGRAGNRLVHQARDCHLQLAGHKAAAAVRQ 1245 +A AA LQ VA RR L PALRH+QP RQPLTRAAG WAP HVARQ HP+L RV R G+RLV Q RD HL+ A A AVRQ Sbjct: 326 VAAAAALQGVAGRRRRLPGPALRHQQPVRQPLTRAAGMWAPLHVARQCHPLLLRVCRYGDRLVLQPRDAHLEFASCNADVAVRQ 409 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|350128 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_8569 ID=mRNA_8569|Name=jgi.p|Trimin1|350128|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1316bp|location=Sequence derived from alignment at Contig_57:113940..116224+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GAGAGAGAGAGAGGGTCAGTTATGGAGTCGTTCATGTCGTTGCCGCCCACback to top protein sequence of jgi.p|Trimin1|350128 >Trimin1|350128|estExt_Genemark1.C_Ctg_570020 ID=Trimin1|350128|estExt_Genemark1.C_Ctg_570020|Name=jgi.p|Trimin1|350128|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=410bp MESFMSLPPTGDGRTSRKRQQMSATMSAAVAEGEAPDPSHAPLQEIVLEQback to top mRNA from alignment at Contig_57:113940..116224+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_8569 ID=mRNA_8569|Name=jgi.p|Trimin1|350128|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2285bp|location=Sequence derived from alignment at Contig_57:113940..116224+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_57:113940..116224+ >mRNA_8569 ID=mRNA_8569|Name=jgi.p|Trimin1|350128|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1230bp|location=Sequence derived from alignment at Contig_57:113940..116224+ (Tribonema minus UTEX_B_3156 )back to top |