Trimin1|350126|estExt_Genemark1.C_Ctg_570015 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|350126
Unique NameTrimin1|350126|estExt_Genemark1.C_Ctg_570015
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length98
Homology
BLAST of jgi.p|Trimin1|350126 vs. uniprot
Match: A0A835YPU7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPU7_9STRA)

HSP 1 Score: 208 bits (530), Expect = 1.740e-68
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0
Query:    1 MAFRMTQTMRAGHERTDCHPALVKLWSKHLPVQGEVSRHLSPNEQKIIVPFLKHAPQKVARKLRIFGVYWGCTFLLVYGTVKGSTWYDRELARQHRS 97
            MAFRMTQTMRAGHERTDCHPALVKLWSKHLPVQGEVSRHLSPNEQKIIVPFLKHAPQKVARKLRIFGVYWGCTFLLVYGTVKGSTWYDRELARQHRS
Sbjct:    1 MAFRMTQTMRAGHERTDCHPALVKLWSKHLPVQGEVSRHLSPNEQKIIVPFLKHAPQKVARKLRIFGVYWGCTFLLVYGTVKGSTWYDRELARQHRS 97          
BLAST of jgi.p|Trimin1|350126 vs. uniprot
Match: A0A835ZEE9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEE9_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 3.300e-25
Identity = 50/97 (51.55%), Postives = 68/97 (70.10%), Query Frame = 0
Query:    1 MAFRMTQTMRAGHER-TDCHPALVKLWSKHLPVQGEVSRHLSPNEQKIIVPFLKHAPQKVARKLRIFGVYWGCTFLLVYGTVKGSTWYDRELARQHR 96
            MAFR +    A H+   + HPALVK WSK+  V GEV+RHLSPN+ +I++P  + AP K+ARK++ FG Y   TFL+VYGT+K + + D  LAR+HR
Sbjct:    1 MAFRRSTAAFATHKPGPEVHPALVKFWSKYSSVDGEVTRHLSPNQIRIMMPLYEAAPAKMARKMKNFGPYVVGTFLMVYGTIKYTVYIDDMLAREHR 97          
BLAST of jgi.p|Trimin1|350126 vs. uniprot
Match: B5YMN0_THAPS (Predicted protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B5YMN0_THAPS)

HSP 1 Score: 66.6 bits (161), Expect = 2.690e-12
Identity = 38/95 (40.00%), Postives = 52/95 (54.74%), Query Frame = 0
Query:    2 AFRMTQTMRAGHERTDCHPALVKLWSKHLPVQGEVSRHLSPNEQKIIVPFLKHAPQKVARKLRIFGVYWGCTFLLVYGTVKGSTWYDRELARQHR 96
            AF  ++ M A   R D  P + K W    P  G+++RHLSP EQ+IIVP++K  P++   K    G Y   TF++VYGT  GS   D    R +R
Sbjct:    5 AFARSRPMMA---RYDVSPHMSKWWKGVRPDDGQITRHLSPFEQQIIVPWIKTWPKRAYAKFADSGPYLIATFIIVYGTAAGSDAADAAQDRSYR 96          
BLAST of jgi.p|Trimin1|350126 vs. uniprot
Match: K0SGS2_THAOC (Cytochrome b-c1 complex subunit 8 n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SGS2_THAOC)

HSP 1 Score: 58.2 bits (139), Expect = 4.740e-9
Identity = 32/83 (38.55%), Postives = 46/83 (55.42%), Query Frame = 0
Query:   15 RTDCHPALVKLWSKHLPVQGEVSRHLSPNEQKIIVPFLKHAPQKVARKLRIFGVYWGCTFLLVYGTVKGSTWYDRELARQHRS 97
            R D  P +   W    P +G+++RHLSP EQ++++P+LK  P++   K    G Y   T +LVYGT   + W D   A Q RS
Sbjct:    8 RYDVSPHMKTWWKGVRPDEGQITRHLSPFEQQVMMPWLKTWPKRAYVKFADSGPYLVATAILVYGT---AAWSDAADAAQDRS 87          
BLAST of jgi.p|Trimin1|350126 vs. uniprot
Match: A0A2R5GU00_9STRA (Cytochrome b-c1 complex subunit 8 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GU00_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 2.000e-7
Identity = 29/80 (36.25%), Postives = 46/80 (57.50%), Query Frame = 0
Query:   19 HPALVKLWSKHLPVQGEVSRHLSPNEQKIIVPFLKHAPQKVARKL--RIFGVYWGCTFLLVYGTVKGSTWYDRELARQHR 96
            HP L KLW K+ P+ G V+R +SP +Q  I P++K  P+K+  K+   +F V  G   L+++GTV  +        ++HR
Sbjct:    9 HPGLAKLWKKYKPINGLVTRTVSPYQQDFITPWVKTWPEKMKHKISDNLFDV--GPGVLVLFGTVAWADATFESEMKKHR 86          
BLAST of jgi.p|Trimin1|350126 vs. uniprot
Match: A0A7S1BR82_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BR82_9STRA)

HSP 1 Score: 48.1 bits (113), Expect = 4.930e-5
Identity = 28/75 (37.33%), Postives = 42/75 (56.00%), Query Frame = 0
Query:   15 RTDCHPALVKLWSKHLPVQGEVSRHLSPNEQKIIVPFLKHAPQKVARKLRIFGVYWGCTFLLVYGTVKGSTWYDR 89
            RTD   A+ K W+K +P  G VS+HLSP EQK +VP++   P++     R    +W  T +L +GT     + D+
Sbjct:   20 RTDVDLAVSKWWAKQVPDNGLVSQHLSPFEQKAVVPWMLTWPKRAY--FRFTETFWYGTSIL-FGTYSMIAYADK 91          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|350126 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A835YPU7_9STRA1.740e-68100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZEE9_9STRA3.300e-2551.55Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
B5YMN0_THAPS2.690e-1240.00Predicted protein n=1 Tax=Thalassiosira pseudonana... [more]
K0SGS2_THAOC4.740e-938.55Cytochrome b-c1 complex subunit 8 n=1 Tax=Thalassi... [more]
A0A2R5GU00_9STRA2.000e-736.25Cytochrome b-c1 complex subunit 8 n=1 Tax=Hondaea ... [more]
A0A7S1BR82_9STRA4.930e-537.33Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036642Cytochrome b-c1 complex subunit 8 superfamilyGENE3D1.20.5.210coord: 24..97
e-value: 3.7E-9
score: 38.6

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_57contigContig_57:96379..97798 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|350126mRNA_8563Tribonema minus UTEX_B_3156 mRNAContig_57 96295..97949 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|350126|estExt_Genemark1.C_Ctg_570015 ID=Trimin1|350126|estExt_Genemark1.C_Ctg_570015|Name=jgi.p|Trimin1|350126|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=98bp
MAFRMTQTMRAGHERTDCHPALVKLWSKHLPVQGEVSRHLSPNEQKIIVP
FLKHAPQKVARKLRIFGVYWGCTFLLVYGTVKGSTWYDRELARQHRS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036642Cyt_bc1_su8_sf