mRNA_8563 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|350126
Unique NamemRNA_8563
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|350126 vs. uniprot
Match: A0A835YPU7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPU7_9STRA)

HSP 1 Score: 208 bits (530), Expect = 3.970e-67
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 1 
Query:   85 MAFRMTQTMRAGHERTDCHPALVKLWSKHLPVQGEVSRHLSPNEQKIIVPFLKHAPQKVARKLRIFGVYWGCTFLLVYGTVKGSTWYDRELARQHRS 375
            MAFRMTQTMRAGHERTDCHPALVKLWSKHLPVQGEVSRHLSPNEQKIIVPFLKHAPQKVARKLRIFGVYWGCTFLLVYGTVKGSTWYDRELARQHRS
Sbjct:    1 MAFRMTQTMRAGHERTDCHPALVKLWSKHLPVQGEVSRHLSPNEQKIIVPFLKHAPQKVARKLRIFGVYWGCTFLLVYGTVKGSTWYDRELARQHRS 97
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BLAST of jgi.p|Trimin1|350126 vs. uniprot
Match: A0A835ZEE9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEE9_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 4.970e-24
Identity = 50/97 (51.55%), Postives = 68/97 (70.10%), Query Frame = 1 
Query:   85 MAFRMTQTMRAGHER-TDCHPALVKLWSKHLPVQGEVSRHLSPNEQKIIVPFLKHAPQKVARKLRIFGVYWGCTFLLVYGTVKGSTWYDRELARQHR 372
            MAFR +    A H+   + HPALVK WSK+  V GEV+RHLSPN+ +I++P  + AP K+ARK++ FG Y   TFL+VYGT+K + + D  LAR+HR
Sbjct:    1 MAFRRSTAAFATHKPGPEVHPALVKFWSKYSSVDGEVTRHLSPNQIRIMMPLYEAAPAKMARKMKNFGPYVVGTFLMVYGTIKYTVYIDDMLAREHR 97
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BLAST of jgi.p|Trimin1|350126 vs. uniprot
Match: B5YMN0_THAPS (Predicted protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B5YMN0_THAPS)

HSP 1 Score: 67.0 bits (162), Expect = 1.910e-11
Identity = 38/95 (40.00%), Postives = 52/95 (54.74%), Query Frame = 1 
Query:   88 AFRMTQTMRAGHERTDCHPALVKLWSKHLPVQGEVSRHLSPNEQKIIVPFLKHAPQKVARKLRIFGVYWGCTFLLVYGTVKGSTWYDRELARQHR 372
            AF  ++ M A   R D  P + K W    P  G+++RHLSP EQ+IIVP++K  P++   K    G Y   TF++VYGT  GS   D    R +R
Sbjct:    5 AFARSRPMMA---RYDVSPHMSKWWKGVRPDDGQITRHLSPFEQQIIVPWIKTWPKRAYAKFADSGPYLIATFIIVYGTAAGSDAADAAQDRSYR 96
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BLAST of jgi.p|Trimin1|350126 vs. uniprot
Match: K0SGS2_THAOC (Cytochrome b-c1 complex subunit 8 n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SGS2_THAOC)

HSP 1 Score: 58.5 bits (140), Expect = 2.810e-8
Identity = 32/83 (38.55%), Postives = 46/83 (55.42%), Query Frame = 1 
Query:  127 RTDCHPALVKLWSKHLPVQGEVSRHLSPNEQKIIVPFLKHAPQKVARKLRIFGVYWGCTFLLVYGTVKGSTWYDRELARQHRS 375
            R D  P +   W    P +G+++RHLSP EQ++++P+LK  P++   K    G Y   T +LVYGT   + W D   A Q RS
Sbjct:    8 RYDVSPHMKTWWKGVRPDEGQITRHLSPFEQQVMMPWLKTWPKRAYVKFADSGPYLVATAILVYGT---AAWSDAADAAQDRS 87
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BLAST of jgi.p|Trimin1|350126 vs. uniprot
Match: A0A2R5GU00_9STRA (Cytochrome b-c1 complex subunit 8 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GU00_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 7.610e-7
Identity = 29/80 (36.25%), Postives = 46/80 (57.50%), Query Frame = 1 
Query:  139 HPALVKLWSKHLPVQGEVSRHLSPNEQKIIVPFLKHAPQKVARKL--RIFGVYWGCTFLLVYGTVKGSTWYDRELARQHR 372
            HP L KLW K+ P+ G V+R +SP +Q  I P++K  P+K+  K+   +F V  G   L+++GTV  +        ++HR
Sbjct:    9 HPGLAKLWKKYKPINGLVTRTVSPYQQDFITPWVKTWPEKMKHKISDNLFDV--GPGVLVLFGTVAWADATFESEMKKHR 86
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|350126 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A835YPU7_9STRA3.970e-67100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZEE9_9STRA4.970e-2451.55Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
B5YMN0_THAPS1.910e-1140.00Predicted protein n=1 Tax=Thalassiosira pseudonana... [more]
K0SGS2_THAOC2.810e-838.55Cytochrome b-c1 complex subunit 8 n=1 Tax=Thalassi... [more]
A0A2R5GU00_9STRA7.610e-736.25Cytochrome b-c1 complex subunit 8 n=1 Tax=Hondaea ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_57contigContig_57:96295..97949 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|350126|estExt_Genemark1.C_Ctg_570015
DescriptionUcrQ family
COG categoryS
Max annot lvl2836|Bacillariophyta
EggNOG OGs2BWBD@1|root,2RF6U@2759|Eukaryota,2XGN2@2836|Bacillariophyta
Evalue4.41e-13
Seed ortholog35128.Thaps23414
Hectar predicted targeting categorysignal anchor
TranscriptId350448
TrackFilteredModels1
ProteinId350126
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|350126gene_8563Tribonema minus UTEX_B_3156 geneContig_57 96295..97949 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|350126Trimin1|350126|estExt_Genemark1.C_Ctg_570015Tribonema minus UTEX_B_3156 polypeptideContig_57 96379..97798 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_8563_1exon_8563_1Tribonema minus UTEX_B_3156 exonContig_57 96295..96483 +
exon_8563_2exon_8563_2Tribonema minus UTEX_B_3156 exonContig_57 96680..96748 +
exon_8563_3exon_8563_3Tribonema minus UTEX_B_3156 exonContig_57 97679..97949 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_8563UTR5_8563Tribonema minus UTEX_B_3156 five_prime_UTRContig_57 96295..96378 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_8563CDS_8563Tribonema minus UTEX_B_3156 CDSContig_57 96379..96483 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_8563UTR3_8563Tribonema minus UTEX_B_3156 three_prime_UTRContig_57 97799..97949 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_8563 ID=mRNA_8563|Name=jgi.p|Trimin1|350126|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=529bp|location=Sequence derived from alignment at Contig_57:96295..97949+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CACGAGAAGCCCAAAAAATCGCAGCACGCGAACGCGGCAGGGAGGCAAGC
AGCCGCTTATTTACATAGCGCATCTCCTCTAGCCATGGCTTTCCGGATGA
CGCAGACCATGCGGGCAGGGCATGAGAGGACTGACTGCCACCCCGCCCTG
GTCAAGCTCTGGAGCAAGCACTTGCCAGTGCAGGGGGAGGTCTCTCGTCA
CTTGTCGCCAAACGAGCAGAAGATCATTGTGCCTTTCCTCAAGCATGCTC
CTCAAAAGGTGGCGCGCAAGCTGCGCATCTTCGGCGTCTACTGGGGGTGC
ACGTTCCTACTGGTGTACGGGACTGTGAAGGGCAGCACGTGGTACGACCG
CGAGCTCGCGCGTCAGCACAGGAGTTGAACTTGGAACTTGAAGTAGAGGG
GGAGCGACACAGCGTAGCACTGGCGCGTAGCAGCAGGGAGTCCAGGGGGG
GGGGGGGGGAGAAGCGGCGTTGATTTGAAGGGTTTAGGCTCTGACGCGTA
CTGCTTCTGATGTCAATAAACATGGGGGA
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protein sequence of jgi.p|Trimin1|350126

>Trimin1|350126|estExt_Genemark1.C_Ctg_570015 ID=Trimin1|350126|estExt_Genemark1.C_Ctg_570015|Name=jgi.p|Trimin1|350126|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=98bp
MAFRMTQTMRAGHERTDCHPALVKLWSKHLPVQGEVSRHLSPNEQKIIVP
FLKHAPQKVARKLRIFGVYWGCTFLLVYGTVKGSTWYDRELARQHRS*
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mRNA from alignment at Contig_57:96295..97949+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8563 ID=mRNA_8563|Name=jgi.p|Trimin1|350126|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1655bp|location=Sequence derived from alignment at Contig_57:96295..97949+ (Tribonema minus UTEX_B_3156 )
CACGAGAAGCCCAAAAAATCGCAGCACGCGAACGCGGCAGGGAGGCAAGC
AGCCGCTTATTTACATAGCGCATCTCCTCTAGCCATGGCTTTCCGGATGA
CGCAGACCATGCGGGCAGGGCATGAGAGGACTGACTGCCACCCCGCCCTG
GTCAAGCTCTGGAGCAAGCACTTGCCAGTGCAGGGGGAGGTAAGCACCTG
CGAGAAGCCATTGCCCTGGCCATAGCCATGCTCGTTGACTGATATTCATA
TCACTCTCTTCATCGTCAGGCTTGTTGACTTGTGTTGAATCATTGCTGTT
CGTCATCCACGGGAACTCGCTCAGCAGCTGTTCCTTTCGAGCGATGGTAT
GGTACTTGACTGGCTGCGTTGCATTCTTTTTGCAGGTCTCTCGTCACTTG
TCGCCAAACGAGCAGAAGATCATTGTGCCTTTCCTCAAGCATGCTCCTCA
AAAGGTGAGAGATGCCTGCCGTGTCAGTTCTGCTTGCTTCAGTCCTGGCT
TGTGCTTCCTGTGCTTCCTGTGTCCAAGCTGGCTAATCCGCTGTGACGAG
AAGACAACGAAGTTTGAAAAGAGTCAGGGGCAGGACCGAGGTTTCCTACT
GGCCACTGGCAGCACATGCATCATTACATTCAAGGCTGCATGTCCCACTG
ACTTGGCCACGAGCTCTCAGACCTTGCTGTGTTTGATTTTCAGAGCCTCA
GCCGTCTTATGGTTGCCAGTCAGTCTGGATGGCTCTGAAACTTGCATCTT
CAGGGTGTGGCTTGTCCATATGCACTCATGGTATGGTCATCCGCAGCGGC
GGCACAAACGATGGCTCGCTGGTCTACAGCCATTCCCAGTACATTTGTGA
CCCGCTTTCAGTCATACAGCTGTACCGACGGCTGCTATGCAAGTTTCGAT
TATTACCTGATGTTACGAACCAGATAGTGGCTGTACGCCAGAGACAGTCG
TTGCGCAGCCCATGCGGACTTCTGTAGTGGCCTGACCGCCTCGCTAGGTG
TCACGATTACACACAACAGCGCCCGGTAGAGTACACCGCACCCAATATTA
TGTGCTGCTGGCGCACAGACCCCAGTGCCCGCGCTTGTGGAGCATTCACA
CGCTGTGCGCCTGAAGCTTTCGTGTCTGTCGGGCCTTCCCTTGCTGCTGG
AGTTCCAGGCCCGCTGACCGTGGCTTGCGCTGGCGGTCGCTGATATCTGT
CGCGTGCCAACCAGGCACTTGCTTCCCCATCCCCGAGTACTGCAACTGGC
GGTTATTGAGTGGCTGTGGCCAATCGACTGCTGCTGCGCTAACTCCCCAA
GTACTGCGTTGTAATGTATACCTACCCCCACTTGCTTTTATACCTACATA
CCCCAAACCCGCCTGCTGGCACGCGCGTGCGCAGGTGGCGCGCAAGCTGC
GCATCTTCGGCGTCTACTGGGGGTGCACGTTCCTACTGGTGTACGGGACT
GTGAAGGGCAGCACGTGGTACGACCGCGAGCTCGCGCGTCAGCACAGGAG
TTGAACTTGGAACTTGAAGTAGAGGGGGAGCGACACAGCGTAGCACTGGC
GCGTAGCAGCAGGGAGTCCAGGGGGGGGGGGGGGGAGAAGCGGCGTTGAT
TTGAAGGGTTTAGGCTCTGACGCGTACTGCTTCTGATGTCAATAAACATG
GGGGA
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Coding sequence (CDS) from alignment at Contig_57:96295..97949+

>mRNA_8563 ID=mRNA_8563|Name=jgi.p|Trimin1|350126|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=294bp|location=Sequence derived from alignment at Contig_57:96295..97949+ (Tribonema minus UTEX_B_3156 )
ATGGCTTTCCGGATGACGCAGACCATGCGGGCAGGGCATGAGAGGACTGA
CTGCCACCCCGCCCTGGTCAAGCTCTGGAGCAAGCACTTGCCAGTGCAGG
GGGAGGTCTCTCGTCACTTGTCGCCAAACGAGCAGAAGATCATTGTGCCT
TTCCTCAAGCATGCTCCTCAAAAGGTGGCGCGCAAGCTGCGCATCTTCGG
CGTCTACTGGGGGTGCACGTTCCTACTGGTGTACGGGACTGTGAAGGGCA
GCACGTGGTACGACCGCGAGCTCGCGCGTCAGCACAGGAGTTGA
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