mRNA_11902 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|136334
Unique NamemRNA_11902
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|136334 vs. uniprot
Match: A0A836CQA2_9STRA (Ferritin-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CQA2_9STRA)

HSP 1 Score: 479 bits (1234), Expect = 7.770e-171
Identity = 250/250 (100.00%), Postives = 250/250 (100.00%), Query Frame = 1
Query:    1 DVAIVKFALNLECLEAQFYSYAAFGHGLSDEQRGHGPEPIGGRKANLTPVATAQAYAEEIANNEIAHVAALRTVLGDQAPPCPLIDIGPAFAAAANAAAGTELVPPFSPYRSDALFVVGAFLFEDVGVTAYNGMAPLIENKDVLGAATGILAIEAYHGGSVRTLLYQQGDVTLAPYAFTVADAVASISALRAALGGGKDAALTTGDGGAPSVFPADANALAFARTTQEVLAIVYLGSADAPGGFFPDGVS 750
            DVAIVKFALNLECLEAQFYSYAAFGHGLSDEQRGHGPEPIGGRKANLTPVATAQAYAEEIANNEIAHVAALRTVLGDQAPPCPLIDIGPAFAAAANAAAGTELVPPFSPYRSDALFVVGAFLFEDVGVTAYNGMAPLIENKDVLGAATGILAIEAYHGGSVRTLLYQQGDVTLAPYAFTVADAVASISALRAALGGGKDAALTTGDGGAPSVFPADANALAFARTTQEVLAIVYLGSADAPGGFFPDGVS
Sbjct:    1 DVAIVKFALNLECLEAQFYSYAAFGHGLSDEQRGHGPEPIGGRKANLTPVATAQAYAEEIANNEIAHVAALRTVLGDQAPPCPLIDIGPAFAAAANAAAGTELVPPFSPYRSDALFVVGAFLFEDVGVTAYNGMAPLIENKDVLGAATGILAIEAYHGGSVRTLLYQQGDVTLAPYAFTVADAVASISALRAALGGGKDAALTTGDGGAPSVFPADANALAFARTTQEVLAIVYLGSADAPGGFFPDGVS 250          
BLAST of jgi.p|Trimin1|136334 vs. uniprot
Match: A0A836CMD7_9STRA (Ferritin-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMD7_9STRA)

HSP 1 Score: 344 bits (882), Expect = 4.250e-117
Identity = 180/250 (72.00%), Postives = 200/250 (80.00%), Query Frame = 1
Query:    1 DVAIVKFALNLECLEAQFYSYAAFGHGLSDEQRGHGPEPIGGRKANLTPVATAQAYAEEIANNEIAHVAALRTVLGDQAPPCPLIDIGPAFAAAANAAAGTELVPPFSPYRSDALFVVGAFLFEDVGVTAYNGMAPLIENKDVLGAATGILAIEAYHGGSVRTLLYQQGDVTLAPYAFTVADAVASISALRAALGGGKDAALTTGDGGAPSVFPADANALAFARTTQEVLAIVYLGSADAPGGFFPDGVS 750
            D+ I KFALNLECLEA+FYSYAAFG+GLSDE RG+GPEPIGG KA L+P    Q YAEEIANNEIAHVA LR  LGD AP CP IDIGPAFAAAANAA GT L P +SPY SD  F+ GAF+FEDVGVTAYNG A L+ NK VLGAA  ILA+EAYHGGS+RTLLYQQ D+ L PYAFTV  A+ +ISALRAA+GGGKD AL T   G  S+ P D NALA+AR   EVLAIVYLGSA+ PGGFFPDG++
Sbjct:   12 DITIAKFALNLECLEAEFYSYAAFGYGLSDELRGYGPEPIGGMKAALSPAV--QTYAEEIANNEIAHVAVLRAALGDAAPACPQIDIGPAFAAAANAAVGTTLSPAYSPYFSDLWFLTGAFIFEDVGVTAYNGAATLLTNKSVLGAAASILAVEAYHGGSIRTLLYQQEDIVLTPYAFTVGQAITAISALRAAVGGGKDVALETN--GVVSIIPTDENALAYARMATEVLAIVYLGSANVPGGFFPDGIN 257          
BLAST of jgi.p|Trimin1|136334 vs. uniprot
Match: A0A836CND4_9STRA (Ferritin-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CND4_9STRA)

HSP 1 Score: 333 bits (853), Expect = 7.480e-113
Identity = 174/250 (69.60%), Postives = 199/250 (79.60%), Query Frame = 1
Query:    1 DVAIVKFALNLECLEAQFYSYAAFGHGLSDEQRGHGPEPIGGRKANLTPVATAQAYAEEIANNEIAHVAALRTVLGDQAPPCPLIDIGPAFAAAANAAAGTELVPPFSPYRSDALFVVGAFLFEDVGVTAYNGMAPLIENKDVLGAATGILAIEAYHGGSVRTLLYQQGDVTLAPYAFTVADAVASISALRAALGGGKDAALTTGDGGAPSVFPADANALAFARTTQEVLAIVYLGSADAPGGFFPDGVS 750
            D+ I KFALNLECLEA+FYSYAAFG+GLSDE RG+GPEPIGG KA L+P    QAYAEE+A NEIAHV  LR  LGD AP CP IDIGPAFAAAANAA GT L PP+SPY +DA F++G+F+FEDVGVTAYNG APL+ NK ++G A  ILA+EAYHGG +RTLLYQQ D  L PY  TV DAV +ISALRA +GGGKD  LTT   G  S+ PAD NALA+AR  +EVLAIVYLGS+D PGGFFP G++
Sbjct:    2 DIMIAKFALNLECLEAEFYSYAAFGYGLSDELRGYGPEPIGGMKAALSP--DVQAYAEEVARNEIAHVGVLRAALGDAAPACPQIDIGPAFAAAANAAVGTTLSPPYSPYYNDAWFLLGSFIFEDVGVTAYNGAAPLLTNKAIVGTAASILAVEAYHGGEIRTLLYQQEDQQLTPYTVTVGDAVTAISALRAKVGGGKDQGLTTD--GMLSLTPADDNALAYAREAEEVLAIVYLGSSDKPGGFFPCGIN 247          
BLAST of jgi.p|Trimin1|136334 vs. uniprot
Match: A0A835YUW9_9STRA (Ferritin-like domain-containing protein n=3 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUW9_9STRA)

HSP 1 Score: 314 bits (805), Expect = 1.300e-104
Identity = 170/268 (63.43%), Postives = 197/268 (73.51%), Query Frame = 1
Query:    1 DVAIVKFALN------------------LECLEAQFYSYAAFGHGLSDEQRGHGPEPIGGRKANLTPVATAQAYAEEIANNEIAHVAALRTVLGDQAPPCPLIDIGPAFAAAANAAAGTELVPPFSPYRSDALFVVGAFLFEDVGVTAYNGMAPLIENKDVLGAATGILAIEAYHGGSVRTLLYQQGDVTLAPYAFTVADAVASISALRAALGGGKDAALTTGDGGAPSVFPADANALAFARTTQEVLAIVYLGSADAPGGFFPDGVS 750
            D+AI KFALN                  LECLEA+FYSYAA+G+GL+D+ RG+GPEPIGG KA L+P    QAYAEEIA NEIAHV  LR  LG+ AP CP IDIGPAFAA ANAAA T   PP++PY +D  F++GAFLFEDVGVTAYNG APL+ NK +L  A  ILA+EAYHGGS+RTLLYQQ DV L P+ FTV +AVA  SALRA++GGGKD AL T   G  S+ P D N+LAFART  EVL IVYLGSA  PGGFFP+G++
Sbjct:   46 DIAIAKFALNAQADCHSVPNIGFRVPLQLECLEAEFYSYAAYGYGLTDDLRGYGPEPIGGMKATLSP--EVQAYAEEIAKNEIAHVGVLRAALGNLAPACPQIDIGPAFAAVANAAAATVFDPPYTPYDNDTSFLLGAFLFEDVGVTAYNGAAPLLTNKGILSTAASILAVEAYHGGSLRTLLYQQEDVVLTPHTFTVGEAVALASALRASVGGGKDKALETD--GVLSIMPVDENSLAFARTATEVLNIVYLGSASTPGGFFPNGIN 309          
BLAST of jgi.p|Trimin1|136334 vs. uniprot
Match: A0A835ZGC8_9STRA (Ferritin-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGC8_9STRA)

HSP 1 Score: 293 bits (751), Expect = 8.600e-97
Identity = 158/250 (63.20%), Postives = 183/250 (73.20%), Query Frame = 1
Query:    1 DVAIVKFALNLECLEAQFYSYAAFGHGLSDEQRGHGPEPIGGRKANLTPVATAQAYAEEIANNEIAHVAALRTVLGDQAPPCPLIDIGPAFAAAANAAAGTELVPPFSPYRSDALFVVGAFLFEDVGVTAYNGMAPLIENKDVLGAATGILAIEAYHGGSVRTLLYQQGDVTLAPYAFTVADAVASISALRAALGGGKDAALTTGDGGAPSVFPADANALAFARTTQEVLAIVYLGSADAPGGFFPDGVS 750
            D  I+ FALNLECLEA+FYSYAAFG  L+DEQRG GP  IGG++A L+     Q YAEEIAN+EI HV  LR VLGD A PCPL+DIGPAFAAAANAA G +L P ++PY +D  F +GAF+FEDVGVTAYNG APLI+NKD L AA G+L +EAYH G VRTLLYQ  D  L PY  TVA A  ++S LR  +GG KD  +   DGG   + P D N+L FART  EVLAIVYLG A  PGGFFPDG++
Sbjct:   37 DTDILNFALNLECLEAEFYSYAAFGAPLTDEQRGGGPASIGGKQAVLSD--DFQTYAEEIANHEIGHVELLRGVLGDAAVPCPLMDIGPAFAAAANAAVGMKLAPAYTPYFNDPWFALGAFIFEDVGVTAYNGAAPLIKNKDYLAAAAGLLGVEAYHAGIVRTLLYQVKDTPLTPYPVTVAAATTAVSNLRGMVGGDKDVPIY--DGGETHLVPVDENSLVFARTVDEVLAIVYLGDAKKPGGFFPDGIN 282          
BLAST of jgi.p|Trimin1|136334 vs. uniprot
Match: I0YQP4_COCSC (Uncharacterized protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YQP4_COCSC)

HSP 1 Score: 247 bits (630), Expect = 2.010e-78
Identity = 144/263 (54.75%), Postives = 178/263 (67.68%), Query Frame = 1
Query:    1 DVAIVKFALNLECLEAQFYSYAAFGHGLSDEQRGHGPEPIGGRKANLTPVATAQAYAEEIANNEIAHVAALRTVLGDQAPPCPLIDIGPAFAAAANAAAGTELVP-PFSPYRSDALFVVGAFLFEDVGVTAYNGMAPLIENKDVLGAATGILAIEAYHGGSVRTLLYQQGDVTLAPYAFTVADAVASISALRAALGGGKDAALTT--GDGGA----------PSVFPADANALAFARTTQEVLAIVYLGSADAPGGFFPDGVS 750
            D+ I+ FALNLECLEA+FYSYAAFG GL+    G GP   GG+KA L+     Q YA EIA +E+ HVA LR+ LGD+A PCP IDIG AF+A  +AA G++     FSPY +D  F++G+FLFEDVGVTAY G AP I +K VLGAA GILA+EAYH G +RTLLYQ G   + PY     D V ++S LRAA+GGGKD  +T+   DG             ++ P +A +LAFART  EVLAIVY GSA  PG FFP+G++
Sbjct:   24 DIQILNFALNLECLEAEFYSYAAFGKGLNATLLGGGPGSTGGQKAKLSYAV--QQYALEIAEDELNHVAFLRSALGDKAVPCPQIDIGTAFSAIIDAALGSKATSYKFSPYDNDLDFLLGSFLFEDVGVTAYLGAAPAITDKTVLGAAGGILAVEAYHAGIIRTLLYQDGAYPVVPYKIQTVDFVQALSNLRAAVGGGKDQGITSPAADGSLYVPYLTSKYESNLVPTNAASLAFARTIPEVLAIVYGGSASTPGAFFPEGIN 284          
BLAST of jgi.p|Trimin1|136334 vs. uniprot
Match: A0A7L9QEA2_9CHLO (Putative extracellular protein CSOL_059a n=1 Tax=Pseudococcomyxa simplex TaxID=464287 RepID=A0A7L9QEA2_9CHLO)

HSP 1 Score: 239 bits (609), Expect = 3.010e-75
Identity = 142/264 (53.79%), Postives = 173/264 (65.53%), Query Frame = 1
Query:    1 DVAIVKFALNLECLEAQFYSYAAFGHGLSDEQRGHGPEPIGGRKANLTPVATAQAYAEEIANNEIAHVAALRTVLGDQAPPCPLIDIGPAFAAAANAAAGTELVP-PFSPYRSDALFVVGAFLFEDVGVTAYNGMAPLIENKD-VLGAATGILAIEAYHGGSVRTLLYQQGDVTLAPYAFTVADAVASISALRAALGGGKDAALTTGDGG------------APSVFPADANALAFARTTQEVLAIVYLGSADAPGGFFPDGVS 750
            DV I+ FALNLECLEA+FYSYAAFG GL+    G GP   GG KA L+   + Q YA EIA +EI HVA LR+ LG  A PCP IDIG AF+A  NAA GT+     FSPY +D  F++GAFLFEDVGVTAY+G AP I +K  VL AA GIL++EAYH G +RTLL+Q G   + PY     D V ++S LRAA+GGGKD  +T                 + ++ P + ++LAFART  EVLAIVY GSA  PG FFP G++
Sbjct:   23 DVNILNFALNLECLEAEFYSYAAFGKGLNATLLGGGPGATGGEKAQLSY--SVQQYATEIAQDEINHVAFLRSALGAAAIPCPQIDIGAAFSAVINAALGTKATSYKFSPYDNDLDFLLGAFLFEDVGVTAYSGAAPFISDKTTVLAAAAGILSVEAYHAGIIRTLLFQDGAYPVKPYKIQTVDFVQALSNLRAAVGGGKDKGITDPPANGSLYIPYLTSKYSSNLVPTNDDSLAFARTIPEVLAIVYGGSASTPGAFFPQGIN 284          
BLAST of jgi.p|Trimin1|136334 vs. uniprot
Match: UPI00166CE419 (ferritin-like domain-containing protein n=1 Tax=Deinococcus roseus TaxID=392414 RepID=UPI00166CE419)

HSP 1 Score: 236 bits (601), Expect = 5.200e-74
Identity = 140/253 (55.34%), Postives = 175/253 (69.17%), Query Frame = 1
Query:    1 DVAIVKFALNLECLEAQFYSYAAFGHGLSDEQRGHGPEPIGGRKANLTPVATAQAYAEEIANNEIAHVAALR---TVLGDQAPPCPLIDIGPAFAAAANAAAGTELVPPFSPYRSDALFVVGAFLFEDVGVTAYNGMAPLIENKDVLGAATGILAIEAYHGGSVRTLLYQQGDVTLAPYAFTVADAVASISALRAALGGGKDAALTTGDGGAPSVFPADANALAFARTTQEVLAIVYLGSADAPGGFFPDGVS 750
            D+ ++ FALNLE LEA+FY +AAFG GLS+   G GP   GG+KA L+  A  Q  AEEIA +E AHV ALR   T LG      P +DIGPAFAAAA+AA+G + +  FSPY +D  F  GAF+FEDVGVTAY+G A LI + DVL AA GILA+EAYH G +R+ LY Q D  + P   TV D VA+ISALR ++GGGKD  +T G  G  ++  ADANA+A+ RTT+EVL IVYL +    GGFFP+G++
Sbjct:   39 DIDVLNFALNLEYLEAEFYLWAAFGAGLSNADAGGGPAATGGKKATLS--AALQQRAEEIARDEEAHVKALRATITKLGGTPVARPQLDIGPAFAAAADAASGGK-IKGFSPYTNDLFFAHGAFIFEDVGVTAYSGAATLITSPDVLQAAAGILAVEAYHAGEIRSYLYDQKDTVVVP-GLTVEDVVAAISALRGSVGGGKDEGITKG--GKANIVAADANAIAYHRTTREVLNIVYLAAGATKGGFFPNGLN 285          
BLAST of jgi.p|Trimin1|136334 vs. uniprot
Match: A0A8J9RR61_9CHLO (Desiccation-related protein PCC13-62 n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9RR61_9CHLO)

HSP 1 Score: 236 bits (601), Expect = 1.990e-73
Identity = 140/259 (54.05%), Postives = 171/259 (66.02%), Query Frame = 1
Query:    1 DVAIVKFALNLECLEAQFYSYAAFGHGLSDEQRGHGPEPIGGRKANLT-PVATAQAYAEEIANNEIAHVAALRTVLGDQAPPCPLIDIGPAFAAAANAAAGT-ELVPPFSPYRSDALFVVGAFLFEDVGVTAYNGMAPLIENKDVLGAATGILAIEAYHGGSVRTLLYQQGDVTLAPYAFTVADAVASISALRAALGGGKDAALTT----GDGGAP---SVFPADANALAFARTTQEVLAIVYLGSADAPGGFFPDGVS 750
            D  I+ FALNLECLEA FYSYAA+G GL+   RG GP   GG+KA L+ PV   Q YA EIA +E+ HVA LR  LG  A PCP ID+GPAFAA   AA G+  +   FSPY +D  F++ AF+ EDVGVTAYNG APLI+ K  +GAA  ILA EAYHGG +RTLLYQ+G  T+ PY+    D    +S LR  +GGGKD  +T+    G    P   ++ P D+N+L FART  EVL IVY GSA  P  F+P+GV+
Sbjct:   68 DADILNFALNLECLEADFYSYAAYGSGLNSTLRGGGPMATGGKKAVLSSPV---QNYANEIALDEVNHVAFLRMALGTAAVPCPQIDVGPAFAAIVKAALGSANMDTMFSPYDNDLDFLLAAFILEDVGVTAYNGAAPLIQAKKNVGAAASILATEAYHGGIIRTLLYQRGYDTVMPYSLQTVDFAQKLSNLRGTVGGGKDEGITSPMANGVKNTPYSSNLVPTDSNSLVFARTPTEVLNIVYGGSAAKPSAFYPNGVN 323          
BLAST of jgi.p|Trimin1|136334 vs. uniprot
Match: A0A5J4XUV6_9CHLO (Uncharacterized protein n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XUV6_9CHLO)

HSP 1 Score: 233 bits (595), Expect = 5.210e-73
Identity = 128/256 (50.00%), Postives = 172/256 (67.19%), Query Frame = 1
Query:    1 DVAIVKFALNLECLEAQFYSYAAFGHGLSDEQRGHGPEPIGGRKANLTPVATAQAYAEEIANNEIAHVAALRTVLGDQAPPCPLIDIGPAFAAAANAAAGTELVPPFSPYRSDALFVVGAFLFEDVGVTAYNGMAPLIENKDVLGAATGILAIEAYHGGSVRTLLYQQGDVTLAPYAFTVADAVASISALRAALGGGKDAALTTGDG------GAPSVFPADANALAFARTTQEVLAIVYLGSADAPGGFFPDGVS 750
            D  I+ FALNLECLEAQ+YS A +GH +SDE  G+GP+PIG ++AN T      + A ++ANNEIAHV  LRT LG+ +  CPL+++G AF+AAA+AA  T L PPF PY +D  F+ GAF+FED+GVTAY G     ++ D++ AA GI+A+EAYH G +RT L Q GDV + PY   V   + +IS  R +L G     +T  +G      G  ++ P D+NA+AF+RT  +VLAI YL +A A GGFFP+GV+
Sbjct:   33 DADILNFALNLECLEAQYYSCAVYGHSISDELTGNGPQPIGCQQANFTND-DLYSIAMDVANNEIAHVNYLRTALGNSSVQCPLVNVGDAFSAAADAALNTTLSPPFVPYTNDLYFLTGAFIFEDLGVTAYKGALTSFQSSDIMLAAAGIMAVEAYHAGYIRTALIQNGDV-VTPYGANVTTIINAISMARESLDGSAAMNMTDDEGIFNSTTGDYTLAPVDSNAVAFSRTASQVLAIAYLNAAGAAGGFFPNGVN 286          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|136334 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CQA2_9STRA7.770e-171100.00Ferritin-like domain-containing protein (Fragment)... [more]
A0A836CMD7_9STRA4.250e-11772.00Ferritin-like domain-containing protein n=1 Tax=Tr... [more]
A0A836CND4_9STRA7.480e-11369.60Ferritin-like domain-containing protein (Fragment)... [more]
A0A835YUW9_9STRA1.300e-10463.43Ferritin-like domain-containing protein n=3 Tax=Tr... [more]
A0A835ZGC8_9STRA8.600e-9763.20Ferritin-like domain-containing protein n=1 Tax=Tr... [more]
I0YQP4_COCSC2.010e-7854.75Uncharacterized protein n=1 Tax=Coccomyxa subellip... [more]
A0A7L9QEA2_9CHLO3.010e-7553.79Putative extracellular protein CSOL_059a n=1 Tax=P... [more]
UPI00166CE4195.200e-7455.34ferritin-like domain-containing protein n=1 Tax=De... [more]
A0A8J9RR61_9CHLO1.990e-7354.05Desiccation-related protein PCC13-62 n=1 Tax=Cocco... [more]
A0A5J4XUV6_9CHLO5.210e-7350.00Uncharacterized protein n=1 Tax=Trebouxia sp. A1-2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_111contigContig_111:375009..378438 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|136334|gw1.111.32.1
DescriptionDesiccation-related protein PCC13-62-like
COG categoryS
Max annot lvl33090|Viridiplantae
EggNOG OGs2CMPR@1|root,2QR8B@2759|Eukaryota,37II1@33090|Viridiplantae
Evalue3.29e-79
Seed ortholog248742.XP_005645257.1
Hectar predicted targeting categoryother localisation
TranscriptId136656
TrackFilteredModels1
ProteinId136334
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|136334gene_11902Tribonema minus UTEX_B_3156 geneContig_111 375009..378438 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|136334Trimin1|136334|gw1.111.32.1Tribonema minus UTEX_B_3156 polypeptideContig_111 375009..378438 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_11902_5exon_11902_5Tribonema minus UTEX_B_3156 exonContig_111 375009..375269 -
exon_11902_4exon_11902_4Tribonema minus UTEX_B_3156 exonContig_111 376115..376224 -
exon_11902_3exon_11902_3Tribonema minus UTEX_B_3156 exonContig_111 376780..377009 -
exon_11902_2exon_11902_2Tribonema minus UTEX_B_3156 exonContig_111 377551..377669 -
exon_11902_1exon_11902_1Tribonema minus UTEX_B_3156 exonContig_111 378409..378438 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_11902CDS_11902Tribonema minus UTEX_B_3156 CDSContig_111 378409..378438 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_11902 ID=mRNA_11902|Name=jgi.p|Trimin1|136334|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=750bp|location=Sequence derived from alignment at Contig_111:375009..378438- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GACGTCGCTATTGTCAAGTTCGCACTCAATCTGGAGTGCCTGGAGGCGCA
GTTCTACAGCTACGCGGCGTTTGGCCACGGCCTCTCGGACGAGCAGCGCG
GTCACGGACCGGAGCCCATCGGCGGCAGAAAGGCCAACCTGACCCCGGTC
GCTACTGCGCAGGCCTACGCGGAAGAAATCGCCAACAACGAGATCGCCCA
TGTGGCAGCACTCCGCACGGTGCTCGGCGACCAGGCTCCGCCGTGCCCGC
TCATCGACATAGGCCCGGCGTTCGCAGCAGCGGCGAATGCGGCCGCCGGC
ACCGAGCTCGTGCCGCCGTTCAGCCCGTACAGAAGTGACGCGTTGTTTGT
GGTCGGAGCCTTCCTGTTTGAGGATGTCGGCGTGACCGCGTACAATGGCA
TGGCGCCGCTGATAGAGAACAAGGACGTCCTGGGCGCAGCGACAGGCATA
CTGGCAATAGAGGCCTATCATGGTGGCAGCGTGCGCACGCTCCTCTACCA
GCAGGGCGACGTGACGCTCGCGCCCTACGCGTTCACCGTCGCGGACGCCG
TTGCGTCCATCTCCGCGCTGCGCGCCGCGCTCGGCGGCGGCAAGGACGCG
GCGCTGACGACCGGCGATGGCGGCGCGCCGTCCGTGTTCCCCGCCGACGC
CAACGCGCTCGCGTTCGCCCGCACGACGCAGGAGGTGCTGGCCATCGTGT
ACCTGGGCAGCGCGGACGCCCCCGGGGGGTTCTTCCCCGACGGCGTCAGC
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protein sequence of jgi.p|Trimin1|136334

>Trimin1|136334|gw1.111.32.1 ID=Trimin1|136334|gw1.111.32.1|Name=jgi.p|Trimin1|136334|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=250bp
DVAIVKFALNLECLEAQFYSYAAFGHGLSDEQRGHGPEPIGGRKANLTPV
ATAQAYAEEIANNEIAHVAALRTVLGDQAPPCPLIDIGPAFAAAANAAAG
TELVPPFSPYRSDALFVVGAFLFEDVGVTAYNGMAPLIENKDVLGAATGI
LAIEAYHGGSVRTLLYQQGDVTLAPYAFTVADAVASISALRAALGGGKDA
ALTTGDGGAPSVFPADANALAFARTTQEVLAIVYLGSADAPGGFFPDGVS
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mRNA from alignment at Contig_111:375009..378438-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11902 ID=mRNA_11902|Name=jgi.p|Trimin1|136334|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3430bp|location=Sequence derived from alignment at Contig_111:375009..378438- (Tribonema minus UTEX_B_3156 )
GACGTCGCTATTGTCAAGTTCGCACTCAATGTAAGTAAGTGGCCCTTGAG GGCGGTTTGCATCAGACAACCAACAAAAGATTGTGTGTGCCGCCTTTAAA ACTGGTCTGGTGAACACTGCTACAGTAGCAGCTTTGTGCATGCTGCAGCA GAGCCATCGGATGCTACAGTATCATATTTCAACTGGATTCAACAATACAT CGGGGTAGTCAAGCCAAAACCTGCTGCAGCACGCTTTTGACCGCAGGTAC TCTTGCTGACACGTGCCTCAGGCCATTGCGAGGGTGCCTTGCTGTAGATA TGTCAACCTAAATCAGCAGACAAGCTTCTGCTATTGCTACACACACAACA GCCGCACATTTTATGAGGACTTGAAGGCCCATTGAACATGGGCATCTGCA ACATCGTTCTCGTTGCCAGTGACACACTCACTAGACCTCACGGGAGCTAC GTGCACGTGCCATCTGGCGGTGCACTGCTGCTGCTGTGCTCGTGCAGCTG TATTCTCGCCACTCAGTTTTTTAAGCAGCCACAGCAGCGTTGCAACAGCC GTCTAGAACCCACGTAACATGGCATCATGATAGCTCAGCGCACACGACGT GCAGCTGCAGGCGAATGTCCAATTTTGTGCGAGCTTTCTAGAAGCCACAT GCCATGGCACAGCTCAGCACGCACAGCGTGCAGGTCCAGGCGTGCGTCCA ATATTGCGATGCGCGCTGATCCATGCCACTCAAGCTCAGCTGTGTTCCCT CTGCTCGTGACTGCCGCAGCTGGAGTGCCTGGAGGCGCAGTTCTACAGCT ACGCGGCGTTTGGCCACGGCCTCTCGGACGAGCAGCGCGGTCACGGACCG GAGCCCATCGGCGGCAGAAAGGCCAACCTGACCCCGGTGTACCAGGCGAG TCACTCGCGCCCTGTCGCGTGAGCGTGAGTTGGCGGGCACACTCGTGCTG AGCTGAGCTGTGCGCAGGCACCGCGCGCACGCACACGCGCTGGCTTGCGC TTAAAATTGCAACCTCCTGATCGCTTAAGATCTTGACATACAGGATAGTT GTGCTCTTTGTGCGCCCAGGCATCATTGATACGTTTGCGTGCATCTTGGT ACCAAAAAACGTGGCGTCTTGCCGATGCGGCTGCAATGACGCCATCATTC AGGTACCGAGATGCATGCAACCGCGTCTACAGTACCTGAAGGCATACCAC CATTTTTTTTCAGCATTCACACGGCAGCGGCGTATGGAACAGTCTCTGCA TGTGTGTGACAGCACTGCATCACACATCTGGCAGCATCTGGCGGACATGG CACTGCATTCTCGGCCGCGTACAGCCATGCCATGGCATCAGCCCAGGCTC AATTTGCCTCGCAGCGCACCTGCCGCTGACTCAGATCCCTTCGACACGCT GACAAGCGCGACTACTCTGTCCCGCGGAGCGCTACTGCGCAGGCCTACGC GGAAGAAATCGCCAACAACGAGATCGCCCATGTGGCAGCACTCCGCACGG TGCTCGGCGACCAGGCTCCGCCGTGCCCGCTCATCGACATAGGCCCGGCG TTCGCAGCAGCGGCGAATGCGGCCGCCGGCACCGAGCTCGTGCCGCCGTT CAGCCCGTACAGAAGTGACGCGTTGTTTGTGGTCGGAGCCTTCCTGTTTG AGGATGTCGGTGAGTGGGCATACCTGCGACGATGCACAGTTACAGATGTA ACTGCTTTGACCAGGGGCCACCATGCGGCCAAGTGCGCTCAACGCTTGAA GGTTCGCTTCGCTGAACAGTGCATGCAGCAAAGTGAACGCAGCAGGTGCA CCACATACGGACGCCATTAAGTCGTGGCCGGTTGAACCGTATACTCTTGT GCAACCTTGGTGAATTCCAGTCCATAATTCTCTGTGGTCGGTGGACTCCG ACCCACTATAGGCTCTCAGGTTGTGCATGCACACCCTGATTTGAGCTGGT GCTACCGCGTGTTGCGTGCATTGCCGAGTTGCGGTCTCCGCGACTGCCAA GCAATGTAGCCAAAATCAGCTCCCTCCATTGCCAGACACCAAACGCATTT ACATATTCGCCTCGACCTGCAGCACATTTGATGAAGCCACCACACATGTT TGAAATGCACCTTGCACCCTGTGTTGCCATATGCTGCTGTGCACAGATGT CACTGCATGCAGGCACTGACTACCTGGCCATGAAACCGCTGCTGCTGATC CCTATTGTGTGCAGGCGTGACCGCGTACAATGGCATGGCGCCGCTGATAG AGAACAAGGACGTCCTGGGCGCAGCGACAGGCATACTGGCAATAGAGGCC TATCATGGTGGCAGCGTGCGCACGGTATGTATGCATTTCATTGCCTGTGC AATACCCCTTGTACCCATGACCGGTCTGCACCTTATCATTTTGTTGCTTT TTGTGTACTCATTCATGGACTTGTCCGTGCAATTTATGCGTTTGTTGTCT GGAAGGGGAGCTGCTCAGCGAGAATGTCAATGCTCTCATGAGCTGATAGT AGGAGTGTTATGTGCTCGGAGGGGGCAACTTGAGTTCGCATTGAGCGTTG CTGGAAGTGCAACTGCTTGTGAGCAGCTTTTGAGCGCTGCCAGAAAGTCA ACACTGCCCGACCTGGATTGCAAAGGGCTTCATTCAATGCTGCATGCGTA GGTTACACAGGCCTGTCATGCGCACATGTGGCAAGAAATTAATGTCCGTT GCACACAACAACAAACATTGCACGACGTGTGCATCGAACGACGTGTTGTG GAGCACTTCAACTTCTTGCGTCAGGACCCACACGTGCTCCTCCCTGCGCA ACAGCCAGGTGTGACGACGCCTTGCCCCCAGCAAAAGTGCTCATGAAGGT GACGCTCCGTGACGCTGCACCTCCGCCCACTCCGGCCAGCGTCATGCAGC TGCTTCACCGGCAGCGCGACCCGCCGCTGGCGAGTGACGCGCAACGAGCG CCGCCCGCGCCGCCATGCGTGCGCGCCGCATTCACCTCCACATGCAATGA TCAAACTTGCGTCATCGACCACTGGTCTGCGTCATCGATTACTTGTGGCA CGGCACTGTCCTTGTGTGCAGTCCGCGCATACCCCACCCCCGAAATGCGT GAGCACAGCACTGTACTTATGCGCAGTACCGTATGCTCATACCCCCCCCC CCCCCCCCCCCGCATGCAGCTCCTCTACCAGCAGGGCGACGTGACGCTCG CGCCCTACGCGTTCACCGTCGCGGACGCCGTTGCGTCCATCTCCGCGCTG CGCGCCGCGCTCGGCGGCGGCAAGGACGCGGCGCTGACGACCGGCGATGG CGGCGCGCCGTCCGTGTTCCCCGCCGACGCCAACGCGCTCGCGTTCGCCC GCACGACGCAGGAGGTGCTGGCCATCGTGTACCTGGGCAGCGCGGACGCC CCCGGGGGGTTCTTCCCCGACGGCGTCAGC
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Coding sequence (CDS) from alignment at Contig_111:375009..378438-

>mRNA_11902 ID=mRNA_11902|Name=jgi.p|Trimin1|136334|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=750bp|location=Sequence derived from alignment at Contig_111:375009..378438- (Tribonema minus UTEX_B_3156 )
GACGTCGCTATTGTCAAGTTCGCACTCAATCTGGAGTGCCTGGAGGCGCA
GTTCTACAGCTACGCGGCGTTTGGCCACGGCCTCTCGGACGAGCAGCGCG
GTCACGGACCGGAGCCCATCGGCGGCAGAAAGGCCAACCTGACCCCGGTC
GCTACTGCGCAGGCCTACGCGGAAGAAATCGCCAACAACGAGATCGCCCA
TGTGGCAGCACTCCGCACGGTGCTCGGCGACCAGGCTCCGCCGTGCCCGC
TCATCGACATAGGCCCGGCGTTCGCAGCAGCGGCGAATGCGGCCGCCGGC
ACCGAGCTCGTGCCGCCGTTCAGCCCGTACAGAAGTGACGCGTTGTTTGT
GGTCGGAGCCTTCCTGTTTGAGGATGTCGGCGTGACCGCGTACAATGGCA
TGGCGCCGCTGATAGAGAACAAGGACGTCCTGGGCGCAGCGACAGGCATA
CTGGCAATAGAGGCCTATCATGGTGGCAGCGTGCGCACGCTCCTCTACCA
GCAGGGCGACGTGACGCTCGCGCCCTACGCGTTCACCGTCGCGGACGCCG
TTGCGTCCATCTCCGCGCTGCGCGCCGCGCTCGGCGGCGGCAAGGACGCG
GCGCTGACGACCGGCGATGGCGGCGCGCCGTCCGTGTTCCCCGCCGACGC
CAACGCGCTCGCGTTCGCCCGCACGACGCAGGAGGTGCTGGCCATCGTGT
ACCTGGGCAGCGCGGACGCCCCCGGGGGGTTCTTCCCCGACGGCGTCAGC
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