mRNA_8635 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|168390
Unique NamemRNA_8635
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|168390 vs. uniprot
Match: A0A836CB23_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB23_9STRA)

HSP 1 Score: 282 bits (721), Expect = 1.160e-96
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 1 
Query:    1 TLRDVVNLFSEQGGACFYSGIPLTAKGNWKVSFERRNVRIKYTRDNCCLIGVEFQGCDQTACSLLEGTGCGGWSHEKYLFFRANYNPANAPATLSSDSCWHGVQCEYAQNMTSWYVPSSSSCNHVNT 381
            TLRDVVNLFSEQGGACFYSGIPLTAKGNWKVSFERRNVRIKYTRDNCCLIGVEFQGCDQTACSLLEGTGCGGWSHEKYLFFRANYNPANAPATLSSDSCWHGVQCEYAQNMTSWYVPSSSSCNHVNT
Sbjct:    1 TLRDVVNLFSEQGGACFYSGIPLTAKGNWKVSFERRNVRIKYTRDNCCLIGVEFQGCDQTACSLLEGTGCGGWSHEKYLFFRANYNPANAPATLSSDSCWHGVQCEYAQNMTSWYVPSSSSCNHVNT 127
[Close]
BLAST of jgi.p|Trimin1|168390 vs. uniprot
Match: A0A836C9B8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9B8_9STRA)

HSP 1 Score: 153 bits (387), Expect = 2.420e-45
Identity = 70/99 (70.71%), Postives = 77/99 (77.78%), Query Frame = 1 
Query:    1 TLRDVVNLFSEQGGACFYSGIPLTAKGNWKVSFERRNVRIKYTRDNCCLIGVEFQGCDQTACSLLEGTGCGGWSHEKYLFFRANYNPANAPATLSSDSC 297
            T  D VN++S Q G C YSGIPLT  G+WKVS ERRNVRI YTR+NC LI VEF G DQTA S+LE TGCGGW+ E YL FRANY+PAN PATLSSD C
Sbjct:   59 TFADAVNMYSNQRGGCLYSGIPLTTAGDWKVSLERRNVRIGYTRENCFLIAVEFPGSDQTARSILEVTGCGGWTREMYLLFRANYDPANVPATLSSDGC 157
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BLAST of jgi.p|Trimin1|168390 vs. uniprot
Match: A0A835Z4T6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4T6_9STRA)

HSP 1 Score: 140 bits (352), Expect = 1.390e-40
Identity = 62/91 (68.13%), Postives = 69/91 (75.82%), Query Frame = 1 
Query:    1 TLRDVVNLFSEQGGACFYSGIPLTAKGNWKVSFERRNVRIKYTRDNCCLIGVEFQGCDQTACSLLEGTGCGGWSHEKYLFFRANYNPANAP 273
            T  DVVN++ EQ G C YSGIPLTAKG+WKVS ERR+V + YTR NCCL+  EFQG D TA S   GTGCGGWSH KY +FRA YNPAN P
Sbjct:    2 TFEDVVNIYKEQCGGCSYSGIPLTAKGDWKVSLERRDVFVGYTRQNCCLVAAEFQGIDHTADSKYGGTGCGGWSHSKYEYFRAYYNPANVP 92
[Close]
BLAST of jgi.p|Trimin1|168390 vs. uniprot
Match: A0A835YXZ2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXZ2_9STRA)

HSP 1 Score: 145 bits (366), Expect = 6.580e-40
Identity = 64/100 (64.00%), Postives = 80/100 (80.00%), Query Frame = 1 
Query:    1 TLRDVVNLFSEQGGACFYSGIPLTAKGNWKVSFERRNVRIKYTRDNCCLIGVEFQGCDQTACSLLEGTGCGGWSHEKYLFFRANYNPANAPATLSS-DSC 297
            T +D+VN++SEQ G C YSG+PLT +G+WKVS ER+NV + Y R NCCLI +EFQG D TA S+L+ TG GGW+ +KYLFFRANY+PAN  AT+SS DSC
Sbjct:  255 TFKDIVNMYSEQSGCCMYSGVPLTKEGDWKVSLERKNVHVGYIRKNCCLIAMEFQGNDHTARSMLDSTGGGGWTRDKYLFFRANYDPANVHATVSSRDSC 354
[Close]
BLAST of jgi.p|Trimin1|168390 vs. uniprot
Match: A0A835YK65_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK65_9STRA)

HSP 1 Score: 148 bits (373), Expect = 7.040e-39
Identity = 65/89 (73.03%), Postives = 72/89 (80.90%), Query Frame = 1 
Query:   10 DVVNLFSEQGGACFYSGIPLTAKGNWKVSFERRNVRIKYTRDNCCLIGVEFQGCDQTACSLLEGTGCGGWSHEKYLFFRANYNPANAPA 276
            DVVN++SEQGG C YSGIPLT KG+WKVS ERR+VR+ YTR+NCCLI +EFQG D TA S   G GC GWS EKYLFFR NYNPAN PA
Sbjct:  702 DVVNMYSEQGGGCLYSGIPLTTKGDWKVSLERRDVRVGYTRENCCLIAMEFQGTDYTAVSKYGGDGCSGWSREKYLFFRTNYNPANVPA 790
[Close]
BLAST of jgi.p|Trimin1|168390 vs. uniprot
Match: A0A836CFZ5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFZ5_9STRA)

HSP 1 Score: 142 bits (357), Expect = 1.140e-36
Identity = 64/99 (64.65%), Postives = 73/99 (73.74%), Query Frame = 1 
Query:    1 TLRDVVNLFSEQGGACFYSGIPLTAKGNWKVSFERRNVRIKYTRDNCCLIGVEFQGCDQTACSLLEGTGCGGWSHEKYLFFRANYNPANAPATLSSDSC 297
            T  DVV ++ EQ GAC YSGIPL   G+WKVS ERR+VRI YT  N CLI  EFQG D TA S++E TG G W+ +KYLFFRANYNPAN P TL S+SC
Sbjct:  765 TFEDVVGMYREQRGACLYSGIPLAKAGDWKVSLERRDVRIGYTLQNTCLIAAEFQGIDHTAHSIIESTGSGAWTRQKYLFFRANYNPANVPTTLRSNSC 863
[Close]
BLAST of jgi.p|Trimin1|168390 vs. uniprot
Match: A0A836CG03_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG03_9STRA)

HSP 1 Score: 138 bits (348), Expect = 1.340e-35
Identity = 60/91 (65.93%), Postives = 70/91 (76.92%), Query Frame = 1 
Query:    1 TLRDVVNLFSEQGGACFYSGIPLTAKGNWKVSFERRNVRIKYTRDNCCLIGVEFQGCDQTACSLLEGTGCGGWSHEKYLFFRANYNPANAP 273
            T  D+VN++ EQ G C YSGIPLT  G+WKVS ERR+VR+ Y+R+NCCLI +EFQG D TA S   G GCGGWS EKYLFFRANY PA+ P
Sbjct:  570 TFEDIVNIYKEQCGTCSYSGIPLTTDGDWKVSLERRDVRVGYSRENCCLIAMEFQGTDYTAVSKYGGDGCGGWSREKYLFFRANYKPADVP 660
[Close]
BLAST of jgi.p|Trimin1|168390 vs. uniprot
Match: A0A835Z7X8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7X8_9STRA)

HSP 1 Score: 133 bits (335), Expect = 1.040e-33
Identity = 57/91 (62.64%), Postives = 70/91 (76.92%), Query Frame = 1 
Query:    1 TLRDVVNLFSEQGGACFYSGIPLTAKGNWKVSFERRNVRIKYTRDNCCLIGVEFQGCDQTACSLLEGTGCGGWSHEKYLFFRANYNPANAP 273
            T  D+ N++ +Q G C YSGIPLT +G+WKVS ERR+VR+ YTR+NCCLI +EFQ  D TA S  EGTGC GWS +KY +FRANY+PAN P
Sbjct:  701 TFEDLANMYRDQCGVCSYSGIPLTTEGDWKVSLERRDVRVGYTRENCCLIAMEFQSADLTAVSKYEGTGCAGWSLQKYEYFRANYDPANVP 791
[Close]
BLAST of jgi.p|Trimin1|168390 vs. uniprot
Match: A0A835YI85_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YI85_9STRA)

HSP 1 Score: 132 bits (331), Expect = 1.250e-33
Identity = 58/91 (63.74%), Postives = 67/91 (73.63%), Query Frame = 1 
Query:    1 TLRDVVNLFSEQGGACFYSGIPLTAKGNWKVSFERRNVRIKYTRDNCCLIGVEFQGCDQTACSLLEGTGCGGWSHEKYLFFRANYNPANAP 273
            T  DVVN++ EQ G C YSGIPLT KG+WK+S ER++V + YTR N CLI +EFQ  D TAC+   GTG GGWS EK LFFRANYNPA  P
Sbjct:  423 TFEDVVNMYQEQLGGCLYSGIPLTTKGDWKMSLERKDVHVGYTRQNSCLIAMEFQSADHTACTTYGGTGSGGWSREKSLFFRANYNPAYVP 513
[Close]
BLAST of jgi.p|Trimin1|168390 vs. uniprot
Match: A0A835Z941_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z941_9STRA)

HSP 1 Score: 125 bits (315), Expect = 3.480e-33
Identity = 55/91 (60.44%), Postives = 64/91 (70.33%), Query Frame = 1 
Query:    1 TLRDVVNLFSEQGGACFYSGIPLTAKGNWKVSFERRNVRIKYTRDNCCLIGVEFQGCDQTACSLLEGTGCGGWSHEKYLFFRANYNPANAP 273
            T  D VN++ EQ G CFYSGIPLTA+G+WKVS ERR+V + YT  NCCL+  EFQG D T  S   GTG G WS  KY +FR NY+PAN P
Sbjct:  153 TFEDAVNMYREQRGVCFYSGIPLTAEGDWKVSLERRDVHVGYTGRNCCLVAAEFQGIDHTVDSKYGGTGSGAWSRSKYEYFRDNYDPANVP 243
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|168390 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CB23_9STRA1.160e-96100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836C9B8_9STRA2.420e-4570.71Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z4T6_9STRA1.390e-4068.13Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YXZ2_9STRA6.580e-4064.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YK65_9STRA7.040e-3973.03Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CFZ5_9STRA1.140e-3664.65Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CG03_9STRA1.340e-3565.93Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z7X8_9STRA1.040e-3362.64Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YI85_9STRA1.250e-3363.74Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z941_9STRA3.480e-3360.44Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_57contigContig_57:649988..650371 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|168390|e_gw1.57.33.1
Hectar predicted targeting categoryother localisation
TranscriptId168712
TrackFilteredModels1
ProteinId168390
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|168390gene_8635Tribonema minus UTEX_B_3156 geneContig_57 649988..650371 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_8635_1exon_8635_1Tribonema minus UTEX_B_3156 exonContig_57 649988..650371 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_8635CDS_8635Tribonema minus UTEX_B_3156 CDSContig_57 649988..650371 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|168390Trimin1|168390|e_gw1.57.33.1Tribonema minus UTEX_B_3156 polypeptideContig_57 649988..650371 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_8635 ID=mRNA_8635|Name=jgi.p|Trimin1|168390|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=384bp|location=Sequence derived from alignment at Contig_57:649988..650371- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ACACTAAGGGATGTCGTCAACCTTTTCAGTGAGCAGGGCGGTGCCTGTTT
CTACAGTGGAATCCCGTTGACCGCAAAAGGCAATTGGAAAGTGTCGTTCG
AGAGGCGCAACGTGCGTATCAAGTACACGCGTGACAACTGCTGCTTGATA
GGGGTGGAGTTTCAAGGTTGTGACCAAACCGCATGCAGCCTCTTAGAGGG
CACTGGCTGCGGTGGGTGGTCTCACGAGAAGTATTTGTTCTTCAGGGCCA
ACTACAACCCCGCCAACGCGCCTGCCACCCTGAGCAGCGACAGCTGCTGG
CATGGGGTTCAATGTGAATACGCACAAAACATGACCTCATGGTATGTCCC
TTCAAGTTCAAGTTGCAATCATGTAAATACATAA
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protein sequence of jgi.p|Trimin1|168390

>Trimin1|168390|e_gw1.57.33.1 ID=Trimin1|168390|e_gw1.57.33.1|Name=jgi.p|Trimin1|168390|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=128bp
TLRDVVNLFSEQGGACFYSGIPLTAKGNWKVSFERRNVRIKYTRDNCCLI
GVEFQGCDQTACSLLEGTGCGGWSHEKYLFFRANYNPANAPATLSSDSCW
HGVQCEYAQNMTSWYVPSSSSCNHVNT*
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mRNA from alignment at Contig_57:649988..650371-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8635 ID=mRNA_8635|Name=jgi.p|Trimin1|168390|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=384bp|location=Sequence derived from alignment at Contig_57:649988..650371- (Tribonema minus UTEX_B_3156 )
ACACTAAGGGATGTCGTCAACCTTTTCAGTGAGCAGGGCGGTGCCTGTTT
CTACAGTGGAATCCCGTTGACCGCAAAAGGCAATTGGAAAGTGTCGTTCG
AGAGGCGCAACGTGCGTATCAAGTACACGCGTGACAACTGCTGCTTGATA
GGGGTGGAGTTTCAAGGTTGTGACCAAACCGCATGCAGCCTCTTAGAGGG
CACTGGCTGCGGTGGGTGGTCTCACGAGAAGTATTTGTTCTTCAGGGCCA
ACTACAACCCCGCCAACGCGCCTGCCACCCTGAGCAGCGACAGCTGCTGG
CATGGGGTTCAATGTGAATACGCACAAAACATGACCTCATGGTATGTCCC
TTCAAGTTCAAGTTGCAATCATGTAAATACATAA
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Coding sequence (CDS) from alignment at Contig_57:649988..650371-

>mRNA_8635 ID=mRNA_8635|Name=jgi.p|Trimin1|168390|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=384bp|location=Sequence derived from alignment at Contig_57:649988..650371- (Tribonema minus UTEX_B_3156 )
ACACTAAGGGATGTCGTCAACCTTTTCAGTGAGCAGGGCGGTGCCTGTTT
CTACAGTGGAATCCCGTTGACCGCAAAAGGCAATTGGAAAGTGTCGTTCG
AGAGGCGCAACGTGCGTATCAAGTACACGCGTGACAACTGCTGCTTGATA
GGGGTGGAGTTTCAAGGTTGTGACCAAACCGCATGCAGCCTCTTAGAGGG
CACTGGCTGCGGTGGGTGGTCTCACGAGAAGTATTTGTTCTTCAGGGCCA
ACTACAACCCCGCCAACGCGCCTGCCACCCTGAGCAGCGACAGCTGCTGG
CATGGGGTTCAATGTGAATACGCACAAAACATGACCTCATGGTATGTCCC
TTCAAGTTCAAGTTGCAATCATGTAAATACATAA
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