mRNA_8553 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|168314 vs. uniprot
Match: A0A836CC85_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC85_9STRA) HSP 1 Score: 401 bits (1030), Expect = 4.730e-141 Identity = 210/210 (100.00%), Postives = 210/210 (100.00%), Query Frame = 1 Query: 1 MLLPCLLQGACISLGSSTSISLIQLQLLVWARGAQAGDVLRQKQLLRQQIEVPGSTTVDEAITAMVNERVASFMVVDAAGKVIGLFTARDVLGVLARFPNKADGLAARVHEFMIPLSQMITCSPEDSLYQCLLVMTELRIRNLPVLADGQVGGIINSNDISDFTFSSEQLGGKKAYINNIRWAMTLQALQRVYFIFEVYLEVELLPRRSN 630 MLLPCLLQGACISLGSSTSISLIQLQLLVWARGAQAGDVLRQKQLLRQQIEVPGSTTVDEAITAMVNERVASFMVVDAAGKVIGLFTARDVLGVLARFPNKADGLAARVHEFMIPLSQMITCSPEDSLYQCLLVMTELRIRNLPVLADGQVGGIINSNDISDFTFSSEQLGGKKAYINNIRWAMTLQALQRVYFIFEVYLEVELLPRRSN Sbjct: 1 MLLPCLLQGACISLGSSTSISLIQLQLLVWARGAQAGDVLRQKQLLRQQIEVPGSTTVDEAITAMVNERVASFMVVDAAGKVIGLFTARDVLGVLARFPNKADGLAARVHEFMIPLSQMITCSPEDSLYQCLLVMTELRIRNLPVLADGQVGGIINSNDISDFTFSSEQLGGKKAYINNIRWAMTLQALQRVYFIFEVYLEVELLPRRSN 210
BLAST of jgi.p|Trimin1|168314 vs. uniprot
Match: D8LCX2_ECTSI (Protein phosphatase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCX2_ECTSI) HSP 1 Score: 201 bits (510), Expect = 3.250e-58 Identity = 100/151 (66.23%), Postives = 123/151 (81.46%), Query Frame = 1 Query: 88 WARGAQAGDVLRQKQLLRQQIEVPGSTTVDEAITAMVNERVASFMVVDAAGKVIGLFTARDVLGVLARFPNKADGLAARVHEFMIPLSQMITCSPEDSLYQCLLVMTELRIRNLPVLADGQVGGIINSNDISDFTFSSEQLGGKKAYINNI 540 W A D+LR K LLRQQ+EV G TVDEAITA VN++V SF+VV+ +VIG+FT+RD+LG LAR+PNKAD L R HEFMIPLS+MI S +DSLYQCLLVM+EL++RNLPV+A+G+V GI+N NDISDF+FS E+LGGKKAY+ NI Sbjct: 5 WLESFHAEDILRDKTLLRQQLEVRGDCTVDEAITAFVNQKVTSFVVVNRRKEVIGMFTSRDLLGELARYPNKADALKTRAHEFMIPLSRMIYASAKDSLYQCLLVMSELKVRNLPVIAEGKVMGIVNVNDISDFSFSMEELGGKKAYMKNI 155
BLAST of jgi.p|Trimin1|168314 vs. uniprot
Match: A0A6H5J6V2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6V2_9PHAE) HSP 1 Score: 202 bits (513), Expect = 4.610e-57 Identity = 101/151 (66.89%), Postives = 123/151 (81.46%), Query Frame = 1 Query: 88 WARGAQAGDVLRQKQLLRQQIEVPGSTTVDEAITAMVNERVASFMVVDAAGKVIGLFTARDVLGVLARFPNKADGLAARVHEFMIPLSQMITCSPEDSLYQCLLVMTELRIRNLPVLADGQVGGIINSNDISDFTFSSEQLGGKKAYINNI 540 W A D+LR K LLRQQ+EV G TVDEAITA VN++V SF+VV+ +VIG+FT+RD+LG LAR+PNKAD L R HEFMIPLS+MI S +DSLYQCLLVM+EL++RNLPV+A+G+V GI+N NDISDF+FS E+LGGKKAYI NI Sbjct: 248 WLESFHAEDILRDKTLLRQQLEVRGDCTVDEAITAFVNQKVTSFVVVNRRKEVIGMFTSRDLLGELARYPNKADALKTRAHEFMIPLSRMIYASAKDSLYQCLLVMSELKVRNLPVIAEGKVMGIVNVNDISDFSFSMEELGGKKAYIKNI 398
BLAST of jgi.p|Trimin1|168314 vs. uniprot
Match: A0A7S3XTX7_HETAK (Protein phosphatase (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XTX7_HETAK) HSP 1 Score: 119 bits (298), Expect = 3.520e-28 Identity = 67/132 (50.76%), Postives = 87/132 (65.91%), Query Frame = 1 Query: 106 AGDVLRQKQLLRQQIEVPGSTTVDEAITAMVNERVASFMVVDAAGKVIGLFTARDVLGVLARFPN--KADGLAARVHEFMIPLSQMITCSPEDSLYQCLLVMTELRIRNLPVLADGQVGGIINSNDISDFTF 495 AG+VLR K L + VP S + EAI N RV+S +V DAA +V+GLFTARDVL + + P + D +V E MIPL+Q+I C PE SL QC L+M E ++RNLPVL DG+V GI+ DISD++F Sbjct: 66 AGEVLRAKTKLVKVQHVPESANLMEAIEVFCNHRVSSVLVHDAADRVVGLFTARDVLREVHQAPRGREQDAFGIKVSELMIPLAQLIYCRPEHSLKQCHLIMKECKVRNLPVLGDGEVLGILTIKDISDYSF 197
BLAST of jgi.p|Trimin1|168314 vs. uniprot
Match: W7THC9_9STRA (Protein phosphatase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7THC9_9STRA) HSP 1 Score: 102 bits (255), Expect = 9.460e-22 Identity = 55/150 (36.67%), Postives = 95/150 (63.33%), Query Frame = 1 Query: 106 AGDVLRQKQLLRQQIEVPGSTTVDEAITAMVNERVASFMVVD-----AAGKVIGLFTARDVLGVLARFPNKADGLAARVHEFMIPLSQMITCSPEDSLYQCLLVMTELRIRNLPVLADGQVGGIINSNDISDFTFSSEQLGGKKAYINNI 540 A +++Q+Q R+ ++ T++EAI + + + MV + A +V+G+FTA+DV+ L++ +KA+ L + V M P+S++I CSP+D+L + +M EL+IR LPV+ DG + GII D+ + +SSE++GGKKA+I + Sbjct: 150 AAHIVKQRQ--RKVCQISSGATLEEAIKILASNNANTSMVYNERTPGGAKEVVGIFTAQDVIKTLSKQADKAEALQSLVKNAMTPMSRVIYCSPDDTLEKVQYIMVELQIRTLPVVKDGVIYGIITLGDVINHHYSSEEIGGKKAFIKGV 297
BLAST of jgi.p|Trimin1|168314 vs. uniprot
Match: A0A7S3HES1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HES1_9STRA) HSP 1 Score: 94.7 bits (234), Expect = 2.320e-19 Identity = 50/151 (33.11%), Postives = 92/151 (60.93%), Query Frame = 1 Query: 112 DVLRQKQLLRQQIEVPGSTTVDEAITAMVNERVASFMVVDAAGKVIGLFTARDVLGVLARFPNKADGLAAR--------VHEFMIPLSQMITCSPEDSLYQCLLVMTELRIRNLPVLADGQVGGIINSNDISDFTFSSEQLGGKKAYINNI 540 DVL Q+ + +P S +V +A++ ++++ +AS +VV+ +++G+FTARD+L + R + +D R + E M + ++ CSP DS +C +M + +IRNLPV+ +G+V GII + +++D +F+ GGKK +I+N+ Sbjct: 87 DVLETMQV--KNFTIPQSASVLDALSHLIDQSLASSLVVNNENEILGIFTARDILKCIQRHYSSSDSRTRRDTFLAETKIKELMTTRNHLVYCSPSDSARRCREIMFQCKIRNLPVIDNGEVRGIITAKNLADASFNIIDTGGKKGFIHNV 235
BLAST of jgi.p|Trimin1|168314 vs. uniprot
Match: A0A482RSQ1_9ARCH (CBS domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RSQ1_9ARCH) HSP 1 Score: 89.7 bits (221), Expect = 3.180e-17 Identity = 53/152 (34.87%), Postives = 93/152 (61.18%), Query Frame = 1 Query: 118 LRQKQLLR----QQIEVPGSTTVDEAITAMVNERVASFMVVDA-AGKVIGLFTARDVLGVL-ARFPNKADGL-----AARVHEFMIPLSQMITCSPEDSLYQCLLVMTELRIRNLPVLADGQVGGIINSNDISDFTFSSEQLGGKKAYINNI 540 LR + +LR + + S TV +A+ +V+E++AS +VV +G V+G+FTARD+L + A GL + +V E M +++ CSP+D++ +C +M + +IRN+PV+ DG V GI+ ++D +F+ + +GGKK +I+N+ Sbjct: 80 LRVRDILRTVENKNFTISSSATVADAVAHLVDEKLASNLVVSPESGAVLGIFTARDLLKFIKATISANPRGLNESMTSTKVTEVMTRREKLVHCSPDDTVKRCREIMFQCKIRNMPVIEDGIVKGILTMKLLADSSFNLQDIGGKKGFIHNV 231
BLAST of jgi.p|Trimin1|168314 vs. uniprot
Match: A0A7S1TY81_9STRA (Protein phosphatase n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TY81_9STRA) HSP 1 Score: 88.2 bits (217), Expect = 1.100e-16 Identity = 55/167 (32.93%), Postives = 85/167 (50.90%), Query Frame = 1 Query: 115 VLRQKQLLRQQIEVPGSTTVDEAITAMVNERVASFMVVDAAGKVIGLFTARDVLGVLARFPNKADG-------------LAARVHEFMIPLSQMITCSPEDSLYQCLLVMTELRIRNLPVLADGQVGGIINSNDISDFTFSSEQLGGKKAYINNIRWAMTLQALQRV 576 +L QK + EV TV E + + + S ++ + V+G+ T+RDVL L + D LA + E + P+ M+ DSL +C ++M+E RIRNLPV+ DG + G++ + D+ D+TF E+LGGK ++I NI L A RV Sbjct: 77 LLAQKSFKNRSAEVSDDITVAEGMRLLGEKGQGSLVLYNEEKAVVGIITSRDVLRSLVMGSDVGDPQEPAALAQEMPERLARPLLELVTPVETMVFAKASDSLARCQIIMSERRIRNLPVVDDGAIVGLVTAKDLMDYTFEPEELGGKASFIKNIATRSGLPAGVRV 243
BLAST of jgi.p|Trimin1|168314 vs. uniprot
Match: A0A5A8E5M0_CAFRO (Protein phosphatase n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E5M0_CAFRO) HSP 1 Score: 84.7 bits (208), Expect = 1.670e-15 Identity = 46/134 (34.33%), Postives = 78/134 (58.21%), Query Frame = 1 Query: 154 VPGSTTVDEAITAMVNERVASFMVVDAAGKVIGLFTARDVLGVLARFPNKADGLAARVHEFMIPLSQMITCSPEDSLYQCLLVMTELRIRNLPVLADG-----QVGGIINSNDISDFTFSSEQLGGKKAYINNI 540 VP T+ EAI A+V R+ ++ + AG +G+ TARD+L + F + D LA V P S+++T +P+DSL Q ++M+E R+R+LPV++ ++ G++ D+SDF + G K+++ NI Sbjct: 23 VPADGTLHEAIEAIVTRRIP-IVIAEHAGSFVGVVTARDILRSVHEFEGEGDPLAQTVRSISTPASKVVTAAPDDSLSQVSIIMSEARVRSLPVVSTSAGGKAELAGVVTLKDVSDFV-NMPDTGAKESFSKNI 154
BLAST of jgi.p|Trimin1|168314 vs. uniprot
Match: A0A7R9YG47_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YG47_9STRA) HSP 1 Score: 81.3 bits (199), Expect = 1.130e-14 Identity = 45/146 (30.82%), Postives = 82/146 (56.16%), Query Frame = 1 Query: 115 VLRQKQLLRQQIEVP--GSTTVDEAITAMVNERVASFMVVDAAGKVIGLFTARDVLGVLARFPNKADG--LAARVHEFMIPLSQMITCSPEDSLYQCLLVMTELRIRNLPVLADGQVGGIINSNDISDFTFSSEQLGGKKAYINNI 540 +LRQ ++++EV G T+ + + + + +S ++ ++GL TARD+L L + + LA + E P ++ DSL +C ++M+E RIRNLPV+ D + G+I + D+ D+++ +QLGGK ++I +I Sbjct: 25 LLRQLSFKKRRVEVRRGGDATLRDVLDVLNEQNASSLLLYYEDKTLLGLVTARDILRALGKTDAQMQEAPLAVPLEEVATPADSLVYAKATDSLARCHIIMSERRIRNLPVVHDNTIVGLITAKDLMDYSYDPQQLGGKASFIRHI 170 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|168314 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_8553 ID=mRNA_8553|Name=jgi.p|Trimin1|168314|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=633bp|location=Sequence derived from alignment at Contig_57:23337..25142- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGCTTCTGCCCTGTTTGCTGCAAGGCGCCTGCATTTCTCTTGGCTCATCback to top protein sequence of jgi.p|Trimin1|168314 >Trimin1|168314|e_gw1.57.77.1 ID=Trimin1|168314|e_gw1.57.77.1|Name=jgi.p|Trimin1|168314|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=211bp MLLPCLLQGACISLGSSTSISLIQLQLLVWARGAQAGDVLRQKQLLRQQIback to top mRNA from alignment at Contig_57:23337..25142- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_8553 ID=mRNA_8553|Name=jgi.p|Trimin1|168314|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1806bp|location=Sequence derived from alignment at Contig_57:23337..25142- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_57:23337..25142- >mRNA_8553 ID=mRNA_8553|Name=jgi.p|Trimin1|168314|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=633bp|location=Sequence derived from alignment at Contig_57:23337..25142- (Tribonema minus UTEX_B_3156 )back to top |