Trimin1|350085|estExt_Genemark1.C_Ctg_550081 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|350085
Unique NameTrimin1|350085|estExt_Genemark1.C_Ctg_550081
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length294
Homology
[Close]
BLAST of jgi.p|Trimin1|350085 vs. uniprot
Match: A0A835YT46_9STRA (CBM1 domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT46_9STRA)

HSP 1 Score: 545 bits (1403), Expect = 4.010e-195
Identity = 294/294 (100.00%), Postives = 294/294 (100.00%), Query Frame = 0 
Query:    1 MRHRSRGAALITLGEARESADAELNMHAGAFDLEPKVVCTAAVTPTPAIQLQQQGRGGQQLSNSDHTQHGDGGGLRVARNGSTAAAPPLGDGXXXXXXXXXXXXXXXXXARTARPSAVMRFSELMAGHMAMKLEGSGEQHSRGLKATNTCGDCMIPAVEQALLDASSQLVICDPKCLTGTGDTTGCDYRQRYQGCRLCTTDPKQKGFICPKGSAGGCAIDYKQCGGSGWNGPLCCQPGVFCVEQNPGYFQCLPDDSKPDKGTPAPTAAATGKPVKPKPGGKTPAPXXXXXXXPT 294
            MRHRSRGAALITLGEARESADAELNMHAGAFDLEPKVVCTAAVTPTPAIQLQQQGRGGQQLSNSDHTQHGDGGGLRVARNGSTAAAPPLGDGXXXXXXXXXXXXXXXXXARTARPSAVMRFSELMAGHMAMKLEGSGEQHSRGLKATNTCGDCMIPAVEQALLDASSQLVICDPKCLTGTGDTTGCDYRQRYQGCRLCTTDPKQKGFICPKGSAGGCAIDYKQCGGSGWNGPLCCQPGVFCVEQNPGYFQCLPDDSKPDKGTPAPTAAATGKPVKPKPGGKTPAPXXXXXXXPT
Sbjct:    1 MRHRSRGAALITLGEARESADAELNMHAGAFDLEPKVVCTAAVTPTPAIQLQQQGRGGQQLSNSDHTQHGDGGGLRVARNGSTAAAPPLGDGXXXXXXXXXXXXXXXXXARTARPSAVMRFSELMAGHMAMKLEGSGEQHSRGLKATNTCGDCMIPAVEQALLDASSQLVICDPKCLTGTGDTTGCDYRQRYQGCRLCTTDPKQKGFICPKGSAGGCAIDYKQCGGSGWNGPLCCQPGVFCVEQNPGYFQCLPDDSKPDKGTPAPTAAATGKPVKPKPGGKTPAPXXXXXXXPT 294
[Close]
BLAST of jgi.p|Trimin1|350085 vs. uniprot
Match: Q2HID0_CHAGB (CBM1 domain-containing protein n=1 Tax=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) TaxID=306901 RepID=Q2HID0_CHAGB)

HSP 1 Score: 57.0 bits (136), Expect = 1.010e-5
Identity = 23/41 (56.10%), Postives = 25/41 (60.98%), Query Frame = 0 
Query:  212 GSAGGCAIDYKQCGGSGWNGPLCCQPGVFCVEQNPGYFQCL 252
            G+ G CA  + QCGGSGW GP CCQ G  C   N  Y QCL
Sbjct:  258 GNTGNCAAKWGQCGGSGWQGPTCCQSGSTCQASNQWYSQCL 298
[Close]
BLAST of jgi.p|Trimin1|350085 vs. uniprot
Match: A0A1Y3MUM4_PIRSE (Carbohydrate-binding module family 1 protein n=1 Tax=Piromyces sp. (strain E2) TaxID=73868 RepID=A0A1Y3MUM4_PIRSE)

HSP 1 Score: 53.1 bits (126), Expect = 2.300e-5
Identity = 22/44 (50.00%), Postives = 27/44 (61.36%), Query Frame = 0 
Query:  217 CAIDYKQCGGSGWNGPLCCQPGVFCVEQNPGYFQCLPDDSKPDK 260
            C+ +Y QCGGS WNGP+CC  G  C   N  Y QC+P+    DK
Sbjct:   21 CSKEYGQCGGSHWNGPICCPIGYTCKFINDWYSQCVPNKQINDK 64
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|350085 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A835YT46_9STRA4.010e-195100.00CBM1 domain-containing protein (Fragment) n=1 Tax=... [more]
Q2HID0_CHAGB1.010e-556.10CBM1 domain-containing protein n=1 Tax=Chaetomium ... [more]
A0A1Y3MUM4_PIRSE2.300e-550.00Carbohydrate-binding module family 1 protein n=1 T... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000254Cellulose-binding domain, fungalSMARTSM00236fcbd_2coord: 219..252
e-value: 1.8E-8
score: 44.1
IPR000254Cellulose-binding domain, fungalPFAMPF00734CBM_1coord: 221..248
e-value: 4.4E-9
score: 36.1
IPR000254Cellulose-binding domain, fungalPROSITEPS51164CBM1_2coord: 216..252
score: 10.604159
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 253..294
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 49..119
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 278..294
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 49..69
IPR035971Cellulose-binding domain superfamilySUPERFAMILY57180Cellulose-binding domaincoord: 220..252

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_55contigContig_55:675998..680653 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|350085mRNA_7321Tribonema minus UTEX_B_3156 mRNAContig_55 675998..680655 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|350085|estExt_Genemark1.C_Ctg_550081 ID=Trimin1|350085|estExt_Genemark1.C_Ctg_550081|Name=jgi.p|Trimin1|350085|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=294bp
MRHRSRGAALITLGEARESADAELNMHAGAFDLEPKVVCTAAVTPTPAIQ
LQQQGRGGQQLSNSDHTQHGDGGGLRVARNGSTAAAPPLGDGDGGRGGGP
AGPGRGEAEARTARPSAVMRFSELMAGHMAMKLEGSGEQHSRGLKATNTC
GDCMIPAVEQALLDASSQLVICDPKCLTGTGDTTGCDYRQRYQGCRLCTT
DPKQKGFICPKGSAGGCAIDYKQCGGSGWNGPLCCQPGVFCVEQNPGYFQ
CLPDDSKPDKGTPAPTAAATGKPVKPKPGGKTPAPTPAPSPAPT
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000254Cellulose-bd_dom_fun
IPR035971CBD_sf