mRNA_7321 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|350085
Unique NamemRNA_7321
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|350085 vs. uniprot
Match: A0A835YT46_9STRA (CBM1 domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT46_9STRA)

HSP 1 Score: 545 bits (1403), Expect = 4.010e-195
Identity = 294/294 (100.00%), Postives = 294/294 (100.00%), Query Frame = 1
Query:    1 MRHRSRGAALITLGEARESADAELNMHAGAFDLEPKVVCTAAVTPTPAIQLQQQGRGGQQLSNSDHTQHGDGGGLRVARNGSTAAAPPLGDGXXXXXXXXXXXXXXXXXARTARPSAVMRFSELMAGHMAMKLEGSGEQHSRGLKATNTCGDCMIPAVEQALLDASSQLVICDPKCLTGTGDTTGCDYRQRYQGCRLCTTDPKQKGFICPKGSAGGCAIDYKQCGGSGWNGPLCCQPGVFCVEQNPGYFQCLPDDSKPDKGTPAPTAAATGKPVKPKPGGKTPAPXXXXXXXPT 882
            MRHRSRGAALITLGEARESADAELNMHAGAFDLEPKVVCTAAVTPTPAIQLQQQGRGGQQLSNSDHTQHGDGGGLRVARNGSTAAAPPLGDGXXXXXXXXXXXXXXXXXARTARPSAVMRFSELMAGHMAMKLEGSGEQHSRGLKATNTCGDCMIPAVEQALLDASSQLVICDPKCLTGTGDTTGCDYRQRYQGCRLCTTDPKQKGFICPKGSAGGCAIDYKQCGGSGWNGPLCCQPGVFCVEQNPGYFQCLPDDSKPDKGTPAPTAAATGKPVKPKPGGKTPAPXXXXXXXPT
Sbjct:    1 MRHRSRGAALITLGEARESADAELNMHAGAFDLEPKVVCTAAVTPTPAIQLQQQGRGGQQLSNSDHTQHGDGGGLRVARNGSTAAAPPLGDGXXXXXXXXXXXXXXXXXARTARPSAVMRFSELMAGHMAMKLEGSGEQHSRGLKATNTCGDCMIPAVEQALLDASSQLVICDPKCLTGTGDTTGCDYRQRYQGCRLCTTDPKQKGFICPKGSAGGCAIDYKQCGGSGWNGPLCCQPGVFCVEQNPGYFQCLPDDSKPDKGTPAPTAAATGKPVKPKPGGKTPAPXXXXXXXPT 294          
BLAST of jgi.p|Trimin1|350085 vs. uniprot
Match: Q2HID0_CHAGB (CBM1 domain-containing protein n=1 Tax=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) TaxID=306901 RepID=Q2HID0_CHAGB)

HSP 1 Score: 57.0 bits (136), Expect = 1.010e-5
Identity = 23/41 (56.10%), Postives = 25/41 (60.98%), Query Frame = 1
Query:  634 GSAGGCAIDYKQCGGSGWNGPLCCQPGVFCVEQNPGYFQCL 756
            G+ G CA  + QCGGSGW GP CCQ G  C   N  Y QCL
Sbjct:  258 GNTGNCAAKWGQCGGSGWQGPTCCQSGSTCQASNQWYSQCL 298          
BLAST of jgi.p|Trimin1|350085 vs. uniprot
Match: A0A1Y3MUM4_PIRSE (Carbohydrate-binding module family 1 protein n=1 Tax=Piromyces sp. (strain E2) TaxID=73868 RepID=A0A1Y3MUM4_PIRSE)

HSP 1 Score: 53.1 bits (126), Expect = 2.300e-5
Identity = 22/44 (50.00%), Postives = 27/44 (61.36%), Query Frame = 1
Query:  649 CAIDYKQCGGSGWNGPLCCQPGVFCVEQNPGYFQCLPDDSKPDK 780
            C+ +Y QCGGS WNGP+CC  G  C   N  Y QC+P+    DK
Sbjct:   21 CSKEYGQCGGSHWNGPICCPIGYTCKFINDWYSQCVPNKQINDK 64          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|350085 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A835YT46_9STRA4.010e-195100.00CBM1 domain-containing protein (Fragment) n=1 Tax=... [more]
Q2HID0_CHAGB1.010e-556.10CBM1 domain-containing protein n=1 Tax=Chaetomium ... [more]
A0A1Y3MUM4_PIRSE2.300e-550.00Carbohydrate-binding module family 1 protein n=1 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_55contigContig_55:675998..680655 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|350085|estExt_Genemark1.C_Ctg_550081
DescriptionCarbohydrate esterase family 1 protein
COG categoryO
Max annot lvl4751|Fungi
EggNOG OGsCOG3509@1|root,2QU71@2759|Eukaryota,39T0C@33154|Opisthokonta,3NYZ8@4751|Fungi,3V3NT@5204|Basidiomycota,22BRD@155619|Agaricomycetes
Evalue4.4e-07
Seed ortholog5346.XP_001837739.1
Hectar predicted targeting categoryother localisation
TranscriptId350407
TrackFilteredModels1
ProteinId350085
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|350085gene_7321Tribonema minus UTEX_B_3156 geneContig_55 675998..680655 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|350085Trimin1|350085|estExt_Genemark1.C_Ctg_550081Tribonema minus UTEX_B_3156 polypeptideContig_55 675998..680653 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_7321_1exon_7321_1Tribonema minus UTEX_B_3156 exonContig_55 675998..676042 +
exon_7321_2exon_7321_2Tribonema minus UTEX_B_3156 exonContig_55 678127..678148 +
exon_7321_3exon_7321_3Tribonema minus UTEX_B_3156 exonContig_55 678444..678481 +
exon_7321_4exon_7321_4Tribonema minus UTEX_B_3156 exonContig_55 678531..678723 +
exon_7321_5exon_7321_5Tribonema minus UTEX_B_3156 exonContig_55 678879..678967 +
exon_7321_6exon_7321_6Tribonema minus UTEX_B_3156 exonContig_55 679377..679668 +
exon_7321_7exon_7321_7Tribonema minus UTEX_B_3156 exonContig_55 680016..680086 +
exon_7321_8exon_7321_8Tribonema minus UTEX_B_3156 exonContig_55 680522..680655 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_7321CDS_7321Tribonema minus UTEX_B_3156 CDSContig_55 675998..676042 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_7321UTR3_7321Tribonema minus UTEX_B_3156 three_prime_UTRContig_55 680654..680655 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_7321 ID=mRNA_7321|Name=jgi.p|Trimin1|350085|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=884bp|location=Sequence derived from alignment at Contig_55:675998..680655+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCGACACAGGTCACGCGGCGCCGCACTCATCACGCTGGGCGAGGCGCG
GGAGAGCGCAGACGCGGAGCTTAATATGCACGCGGGCGCATTTGATCTGG
AGCCGAAGGTGGTTTGCACCGCTGCGGTGACCCCTACTCCAGCCATACAG
CTGCAGCAGCAGGGAAGGGGGGGGCAGCAGCTCAGCAACAGCGACCACAC
ACAGCATGGCGATGGTGGCGGCCTGCGCGTGGCGCGCAACGGCAGCACCG
CGGCGGCGCCACCGCTCGGCGATGGCGACGGCGGCCGTGGTGGAGGGCCA
GCTGGCCCTGGACGAGGAGAGGCGGAAGCGCGCACGGCACGGCCGTCAGC
GGTCATGCGCTTCTCAGAACTCATGGCTGGGCACATGGCCATGAAGCTGG
AAGGCAGCGGCGAGCAGCATTCTAGGGGTCTCAAGGCCACTAATACATGC
GGCGACTGCATGATTCCCGCTGTGGAGCAAGCTCTGCTAGACGCGTCCAG
CCAGTTGGTGATCTGCGATCCCAAGTGCTTGACGGGCACGGGTGACACGA
CGGGTTGCGATTACAGACAGCGTTACCAGGGCTGTAGGCTTTGCACTACA
GATCCGAAGCAGAAAGGATTCATCTGTCCAAAAGGGTCCGCTGGAGGCTG
CGCAATTGACTACAAACAGTGTGGCGGAAGCGGATGGAATGGGCCACTGT
GCTGCCAACCTGGAGTATTTTGCGTGGAGCAAAATCCTGGCTACTTTCAG
TGTCTCCCGGACGACTCAAAACCCGACAAGGGCACACCTGCACCAACCGC
GGCGGCGACGGGCAAGCCAGTCAAGCCAAAGCCAGGCGGCAAAACCCCTG
CCCCGACCCCCGCCCCAAGCCCTGCCCCCACCGC
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protein sequence of jgi.p|Trimin1|350085

>Trimin1|350085|estExt_Genemark1.C_Ctg_550081 ID=Trimin1|350085|estExt_Genemark1.C_Ctg_550081|Name=jgi.p|Trimin1|350085|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=294bp
MRHRSRGAALITLGEARESADAELNMHAGAFDLEPKVVCTAAVTPTPAIQ
LQQQGRGGQQLSNSDHTQHGDGGGLRVARNGSTAAAPPLGDGDGGRGGGP
AGPGRGEAEARTARPSAVMRFSELMAGHMAMKLEGSGEQHSRGLKATNTC
GDCMIPAVEQALLDASSQLVICDPKCLTGTGDTTGCDYRQRYQGCRLCTT
DPKQKGFICPKGSAGGCAIDYKQCGGSGWNGPLCCQPGVFCVEQNPGYFQ
CLPDDSKPDKGTPAPTAAATGKPVKPKPGGKTPAPTPAPSPAPT
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mRNA from alignment at Contig_55:675998..680655+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7321 ID=mRNA_7321|Name=jgi.p|Trimin1|350085|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4658bp|location=Sequence derived from alignment at Contig_55:675998..680655+ (Tribonema minus UTEX_B_3156 )
ATGCGACACAGGTCACGCGGCGCCGCACTCATCACGCTGGGCGAGGTATG TGACGTGCGGCACCGACGCAATAGCGTGGACATCCAGTTGCCCACACTTC CCTGACACTCTTTGAAAGAATTTTACTCATGATCACTCACAACATTGTGC TGCAGCGAACACTGTGATTCACTGCTGTCAAGTGCTCATGTTGCTATGTA CCACCTAGCTGTGTCACAGCCTGCGCTGTGCTGTATGTGTTGAGCCAACT TGCACCGATGCGGCTGGCGGCCTTTCAAGCCACGCTTGCGAATAAAGCTC AACATACACTGTGTGCATGTATGCAAGCGTATCTGATGGCGTTGCTCTGT ATGACGTCGCCTCAGACTGGTAACAATGGGCGCATGAGTGAGGGCCACTG CCAGACGCAATCCACTTTAAGCAAATTGGTACATACTTCTCCGCCAATGC AATCTTCAAGTGCATTATGCCGGTCATGTCAAATCTTCCAGGAAGTGGCC ATTTGCTGCACTGGCACAGCTGTGTGACTGGCGGGTGCATGATGCATGCT TGGAAGCACGCGATTCGAAGCATGAACTTGCATGATCCCCTGCGTCTGTG GCTGCTACCAGGTCTCGTTGGTATAACATTGACTGAGAGCATTGCACAAC TCCTTCTGCCTGTGGCCATCATGCATTCAAGTTGCGACAAAGGTCAATAC CAGGTCTCACTGACCTTAGTGATTGCTCTTTCTTGGACGTATGCTGCAGG GTGCCGGCATCGTGAGTGCACCTGCTGCTGCTACTGGTGGCACAACAACA GGAAGCACCACAGACAAACCCGTAGATGGCAACCTTGGTTCCCATAAGAC CGACAGGCCAACTTCACCAACAGACAACGATGGAGGTCTGTCATCCACCG CTAGTACAGTTTCAAGTGCCGCCGACGGACCCTCAGCCAACAATGGCGAT CAAGCCACAGACAGTGATAATAACGATGCAGCTTCTACAGGCAGTGCATC GCACTTGGTAGTGAGCGTTGCTTTCCAGCTGCTGCTAATGAACGGCCTAG CGTTGCTGGTTTCATGACAAGACCTTTACGTGCAGCGGACACGATTCAGC ACTAGTGCGTCCGGACATGCTAAGCAGTAGAGTTGAATTTGTGGTAGTAC TGGTCATTGTTGTGAGGCTTATGTGGCCTCTGGGATGTTGGGACTCAACA CAGAGCATGCTGTTTGCAGCAGCTCTCTCAGTTCAAGAGATAGTTTGTCA GTACATCACTGGCACCTTCTCTGACAACAACACTTTGAATAAACACATGA CATGACCAACCACAGCCAGTCTGAATGCGCACATGTGCTTGTGCAGTTTT TGCCTGCGTGCAAGCATGTGCGCCTCTGATATCATGCATTGACGCTTCTA ATGCATCATGTAGTCGCCTGGCACTGGGACACATCTCAATTTCAGATGAG CGAAGCACTTTCTTGGTTTCAGGCGTTCAACACGGCTTCCCCTGTTCACT GCACAACTCATGCATACATTGGTAGAGTTTTTCCCATTTGTTTTGGTGGC GTGTTCAAACCTCACCAACTTGGGGCGTTATACTTTCGATGTCTTTGTAT AGTTACGAAACAAGCCCCTTCTGAGCAAGCAGAACCGCGCTGTGCAAGCA GCAGTGCACCAAACGCCACCAGATCCTTTGCAAGAGTGATTGTTGTTCAA GTGCAGGCCAGGCAGGTGACGCCCCACTCGTCACTGCTCAACAACCCCTT GCATAGGGGACACGCAATGCTTCACGACCCCCCCCCCCGGGCTCCCAACG AATTGCAGAGACCTAGCGAGTTGCAAAGGGGACGCGCAAATTGGACATCG TGGCAAAGGCCAGAAGACGCCATGCGGTGACTGCTGGCAAGCAAGTGAGG ATACTGGCAAATATAGGTATGGAGTAGGTCCAGAGCATCGAGATCAGCTA GCTGTCATTGCCAAGATCTGCACTGCTGCTCCTGGCATGTGCGCAGTTGC AGGCGCAAGCAACGTGCCCACCAGTGCCGAGAGAGCGCTGGCGCAAGTGA CGCGCCAGCCTCTGTCGAAAGGGCGTAGCCGAAAGAGCGCAGGCGCGCGT AACGCGCCCGCCGCTGCTAAAGCGCGCAGGCGCGGGAGAGCGCAGACGCG GGTAACGCGCTCGCCGCTGCCGAATGAACGCGGGCACGAGCAACTTGAAC GCGCCCGTTGCCGGAAGCACCGGTTTGAGTAACGCGCCCGTCGCTGAAAG AACTCAGGCTCAAATAACGCGCCCATTGCCAAAAGAGTGCCGGCGCGAGT AACACGCCAGCTACTGCCAAAAGTGCACAGGCGCAAGTAACGCGCCCGTC GCCAATGAAGCGCAGGCGCGAGTAACGTATGCAGGCAACTCGGAGTGGTC GCTGCCAACGTCATGCTGCCAGTCATGATGCGCCCCCGCTGTGCAGAGCT TAATATGCACGCGGGCGCATTTGATCTGGAGCCGGTGAGTTACTGCGCGG GCGGACGTTTGGTCTGCGCGCCGGCTCGCGCAGAAGGTGGTTTGCACCGC TGCGGTGACCCCTACTCCAGCCATACAGCTGCAGCAGCAGGGAAGGGGGG GGCAGCAGCTCAGCAACAGCGACCACACACAGCATGGCGATGGTGGCGGC CTGCGCGTGGCGCGCAACGGCAGCACCGCGGCGGCGCCACCGCTCGGCGA TGGCGACGGCGGCCGTGGTGGAGGGCGTCGCGCAGTGCCACCAGCGTCGG CGGCGGCAGCGCTGCGGCTGCGGCAGCTCAGCTCTGCAGAAATTTCTCCA CTTTTTTAAAGCACAATACATACCCCACGACGGGCTCTGTTTAGCTAACG CAGTTGCGGCCCCAACGCGCCTCTTTCGCAGCAGCTGGCCCTGGACGAGG AGAGGCGGAAGCGCGCACGGCACGGCCGTCAGCGGTCATGCGCTTCTCAG AACTCATGGCTGGGCACATGGTGAGCGAGGTTCCTTTACGTGCAAATTGT ATACAAGTTGCGCCGAGGCTTATTTTGCACCGCGCGACGGCGTGCTCGCC AGGGACGGCCGCGCTGCGTGGCGGAAAGAGGCGTACAGCTCTTATTGAGT GTGGTCGTGCCTTGCAAGACCTGTCGTAAGCAGTTGCTTCCGGACCCTCT GCCGTTCGAGGGGCAAATTTTACGGTAGCGTGCGTTGGCTCCGAGCAGCG CTAGCGCAGCGGTAGCACCTTCAGCGCATCTCAATGGAACAAGTGAGGAT TTGACAGCTGATCCAATACCACACGCTTGCTTCTCGAATATTGGCAATGG TGGCGAACTGCACAAAGTCCACACTTTCGCAGAGTTCTGACCCCTGCTGT CTGGCACTGCTGCCTGCTGTCGTTGACAGGCCATGAAGCTGGAAGGCAGC GGCGAGCAGCATTCTAGGGGTCTCAAGGCCACTAATACATGCGGCGACTG CATGATTCCCGCTGTGGAGCAAGCTCTGCTAGACGCGTCCAGCCAGTTGG TGATCTGCGATCCCAAGTGCTTGACGGGCACGGGTGACACGACGGGTTGC GATTACAGACAGCGTTACCAGGGCTGTAGGCTTTGCACTACAGATCCGAA GCAGAAAGGATTCATCTGTCCAAAAGGGTCCGCTGGAGGCTGCGCAATTG ACTACAAACAGTGTGGCGGAAGTGAGTATAATGAGGGAGAATTCACCACT GTGTTGCTGACTTTTATGGCGGCTTACGCCGATGGTGCGGCAATATCCAC TAGCGCTGCTTCAAACACACAACATGGACGACGCCAATGGTGCCTTGCTG CAGGCTAGGTGCTGTGGTTCGAGGCCTCAGATTCTGTGTAGCCAGCTTCG CTTGACGGCAACCCATGGCAGCGCAGTACCACATTGCAGTGGGCGTAGCA CGCAAGCGCGTAAACGCAGCTGCTCTTTTCATGCATCTGAGGCCTGATAC CATTGCGGACATAACCCCACCTCCTGCTGATGTTGACAATGAACCGGTTT ATTGTTCGTCGCGTGCAGGCGGATGGAATGGGCCACTGTGCTGCCAACCT GGAGTATTTTGCGTGGAGCAAAATCCTGGCTACTTTCAGGTGAGCATATG TGGAAGTAATGTTTTTGGACCCGACATGGCAGCGCCACTGCTTCAGGAAC GAAGTTTCCCTGGTGTGTGTTTGCTCTCTTGTGCTAGAAGCTAAGCGGGT GGGTGACAGCGCCAGGCACCGCTGTTGTGCACATTTGTGCACCGCAGTTG CTGCTCATATATAGCTTCTACCACAACAGCAACGGCACCGCAGCATTTTA AAAGCTGATGCATAACGTACATGCACTTAGGTCACTGGAGGCATCAGACC GACAGTCCATGGTCCTTGTAACCTCTGCTTGTCAGCCATGCTAAACGTGC AGCACTTGCCTGCTGAGCAGCACACGGTTTGTTGGAGGCTGCTGCTCATA GCATCGCTGCTCTGCACACGACTCACTTCTCACGAGTGTACCCGCAACGC ATGTCACCCACTGGTGTACCGCAGTGTCTCCCGGACGACTCAAAACCCGA CAAGGGCACACCTGCACCAACCGCGGCGGCGACGGGCAAGCCAGTCAAGC CAAAGCCAGGCGGCAAAACCCCTGCCCCGACCCCCGCCCCAAGCCCTGCC CCCACCGC
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Coding sequence (CDS) from alignment at Contig_55:675998..680655+

>mRNA_7321 ID=mRNA_7321|Name=jgi.p|Trimin1|350085|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=882bp|location=Sequence derived from alignment at Contig_55:675998..680655+ (Tribonema minus UTEX_B_3156 )
ATGCGACACAGGTCACGCGGCGCCGCACTCATCACGCTGGGCGAGGCGCG
GGAGAGCGCAGACGCGGAGCTTAATATGCACGCGGGCGCATTTGATCTGG
AGCCGAAGGTGGTTTGCACCGCTGCGGTGACCCCTACTCCAGCCATACAG
CTGCAGCAGCAGGGAAGGGGGGGGCAGCAGCTCAGCAACAGCGACCACAC
ACAGCATGGCGATGGTGGCGGCCTGCGCGTGGCGCGCAACGGCAGCACCG
CGGCGGCGCCACCGCTCGGCGATGGCGACGGCGGCCGTGGTGGAGGGCCA
GCTGGCCCTGGACGAGGAGAGGCGGAAGCGCGCACGGCACGGCCGTCAGC
GGTCATGCGCTTCTCAGAACTCATGGCTGGGCACATGGCCATGAAGCTGG
AAGGCAGCGGCGAGCAGCATTCTAGGGGTCTCAAGGCCACTAATACATGC
GGCGACTGCATGATTCCCGCTGTGGAGCAAGCTCTGCTAGACGCGTCCAG
CCAGTTGGTGATCTGCGATCCCAAGTGCTTGACGGGCACGGGTGACACGA
CGGGTTGCGATTACAGACAGCGTTACCAGGGCTGTAGGCTTTGCACTACA
GATCCGAAGCAGAAAGGATTCATCTGTCCAAAAGGGTCCGCTGGAGGCTG
CGCAATTGACTACAAACAGTGTGGCGGAAGCGGATGGAATGGGCCACTGT
GCTGCCAACCTGGAGTATTTTGCGTGGAGCAAAATCCTGGCTACTTTCAG
TGTCTCCCGGACGACTCAAAACCCGACAAGGGCACACCTGCACCAACCGC
GGCGGCGACGGGCAAGCCAGTCAAGCCAAAGCCAGGCGGCAAAACCCCTG
CCCCGACCCCCGCCCCAAGCCCTGCCCCCACC
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