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Homology
BLAST of jgi.p|Trimin1|350085 vs. uniprot
Match: A0A835YT46_9STRA (CBM1 domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT46_9STRA) HSP 1 Score: 545 bits (1403), Expect = 4.010e-195 Identity = 294/294 (100.00%), Postives = 294/294 (100.00%), Query Frame = 1
Query: 1 MRHRSRGAALITLGEARESADAELNMHAGAFDLEPKVVCTAAVTPTPAIQLQQQGRGGQQLSNSDHTQHGDGGGLRVARNGSTAAAPPLGDGXXXXXXXXXXXXXXXXXARTARPSAVMRFSELMAGHMAMKLEGSGEQHSRGLKATNTCGDCMIPAVEQALLDASSQLVICDPKCLTGTGDTTGCDYRQRYQGCRLCTTDPKQKGFICPKGSAGGCAIDYKQCGGSGWNGPLCCQPGVFCVEQNPGYFQCLPDDSKPDKGTPAPTAAATGKPVKPKPGGKTPAPXXXXXXXPT 882
MRHRSRGAALITLGEARESADAELNMHAGAFDLEPKVVCTAAVTPTPAIQLQQQGRGGQQLSNSDHTQHGDGGGLRVARNGSTAAAPPLGDGXXXXXXXXXXXXXXXXXARTARPSAVMRFSELMAGHMAMKLEGSGEQHSRGLKATNTCGDCMIPAVEQALLDASSQLVICDPKCLTGTGDTTGCDYRQRYQGCRLCTTDPKQKGFICPKGSAGGCAIDYKQCGGSGWNGPLCCQPGVFCVEQNPGYFQCLPDDSKPDKGTPAPTAAATGKPVKPKPGGKTPAPXXXXXXXPT
Sbjct: 1 MRHRSRGAALITLGEARESADAELNMHAGAFDLEPKVVCTAAVTPTPAIQLQQQGRGGQQLSNSDHTQHGDGGGLRVARNGSTAAAPPLGDGXXXXXXXXXXXXXXXXXARTARPSAVMRFSELMAGHMAMKLEGSGEQHSRGLKATNTCGDCMIPAVEQALLDASSQLVICDPKCLTGTGDTTGCDYRQRYQGCRLCTTDPKQKGFICPKGSAGGCAIDYKQCGGSGWNGPLCCQPGVFCVEQNPGYFQCLPDDSKPDKGTPAPTAAATGKPVKPKPGGKTPAPXXXXXXXPT 294
BLAST of jgi.p|Trimin1|350085 vs. uniprot
Match: Q2HID0_CHAGB (CBM1 domain-containing protein n=1 Tax=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) TaxID=306901 RepID=Q2HID0_CHAGB) HSP 1 Score: 57.0 bits (136), Expect = 1.010e-5 Identity = 23/41 (56.10%), Postives = 25/41 (60.98%), Query Frame = 1
Query: 634 GSAGGCAIDYKQCGGSGWNGPLCCQPGVFCVEQNPGYFQCL 756
G+ G CA + QCGGSGW GP CCQ G C N Y QCL
Sbjct: 258 GNTGNCAAKWGQCGGSGWQGPTCCQSGSTCQASNQWYSQCL 298
BLAST of jgi.p|Trimin1|350085 vs. uniprot
Match: A0A1Y3MUM4_PIRSE (Carbohydrate-binding module family 1 protein n=1 Tax=Piromyces sp. (strain E2) TaxID=73868 RepID=A0A1Y3MUM4_PIRSE) HSP 1 Score: 53.1 bits (126), Expect = 2.300e-5 Identity = 22/44 (50.00%), Postives = 27/44 (61.36%), Query Frame = 1
Query: 649 CAIDYKQCGGSGWNGPLCCQPGVFCVEQNPGYFQCLPDDSKPDK 780
C+ +Y QCGGS WNGP+CC G C N Y QC+P+ DK
Sbjct: 21 CSKEYGQCGGSHWNGPICCPIGYTCKFINDWYSQCVPNKQINDK 64
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| ProteomeId | Trimin1|350085|estExt_Genemark1.C_Ctg_550081 |
| Description | Carbohydrate esterase family 1 protein |
| COG category | O |
| Max annot lvl | 4751|Fungi |
| EggNOG OGs | COG3509@1|root,2QU71@2759|Eukaryota,39T0C@33154|Opisthokonta,3NYZ8@4751|Fungi,3V3NT@5204|Basidiomycota,22BRD@155619|Agaricomycetes |
| Evalue | 4.4e-07 |
| Seed ortholog | 5346.XP_001837739.1 |
| Hectar predicted targeting category | other localisation |
| TranscriptId | 350407 |
| Track | FilteredModels1 |
| ProteinId | 350085 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_7321 ID=mRNA_7321|Name=jgi.p|Trimin1|350085|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=884bp|location=Sequence derived from alignment at Contig_55:675998..680655+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.
ATGCGACACAGGTCACGCGGCGCCGCACTCATCACGCTGGGCGAGGCGCG GGAGAGCGCAGACGCGGAGCTTAATATGCACGCGGGCGCATTTGATCTGG AGCCGAAGGTGGTTTGCACCGCTGCGGTGACCCCTACTCCAGCCATACAG CTGCAGCAGCAGGGAAGGGGGGGGCAGCAGCTCAGCAACAGCGACCACAC ACAGCATGGCGATGGTGGCGGCCTGCGCGTGGCGCGCAACGGCAGCACCG CGGCGGCGCCACCGCTCGGCGATGGCGACGGCGGCCGTGGTGGAGGGCCA GCTGGCCCTGGACGAGGAGAGGCGGAAGCGCGCACGGCACGGCCGTCAGC GGTCATGCGCTTCTCAGAACTCATGGCTGGGCACATGGCCATGAAGCTGG AAGGCAGCGGCGAGCAGCATTCTAGGGGTCTCAAGGCCACTAATACATGC GGCGACTGCATGATTCCCGCTGTGGAGCAAGCTCTGCTAGACGCGTCCAG CCAGTTGGTGATCTGCGATCCCAAGTGCTTGACGGGCACGGGTGACACGA CGGGTTGCGATTACAGACAGCGTTACCAGGGCTGTAGGCTTTGCACTACA GATCCGAAGCAGAAAGGATTCATCTGTCCAAAAGGGTCCGCTGGAGGCTG CGCAATTGACTACAAACAGTGTGGCGGAAGCGGATGGAATGGGCCACTGT GCTGCCAACCTGGAGTATTTTGCGTGGAGCAAAATCCTGGCTACTTTCAG TGTCTCCCGGACGACTCAAAACCCGACAAGGGCACACCTGCACCAACCGC GGCGGCGACGGGCAAGCCAGTCAAGCCAAAGCCAGGCGGCAAAACCCCTG CCCCGACCCCCGCCCCAAGCCCTGCCCCCACCGC back to topprotein sequence of jgi.p|Trimin1|350085 >Trimin1|350085|estExt_Genemark1.C_Ctg_550081 ID=Trimin1|350085|estExt_Genemark1.C_Ctg_550081|Name=jgi.p|Trimin1|350085|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=294bp
MRHRSRGAALITLGEARESADAELNMHAGAFDLEPKVVCTAAVTPTPAIQ LQQQGRGGQQLSNSDHTQHGDGGGLRVARNGSTAAAPPLGDGDGGRGGGP AGPGRGEAEARTARPSAVMRFSELMAGHMAMKLEGSGEQHSRGLKATNTC GDCMIPAVEQALLDASSQLVICDPKCLTGTGDTTGCDYRQRYQGCRLCTT DPKQKGFICPKGSAGGCAIDYKQCGGSGWNGPLCCQPGVFCVEQNPGYFQ CLPDDSKPDKGTPAPTAAATGKPVKPKPGGKTPAPTPAPSPAPT back to topmRNA from alignment at Contig_55:675998..680655+ Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_7321 ID=mRNA_7321|Name=jgi.p|Trimin1|350085|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4658bp|location=Sequence derived from alignment at Contig_55:675998..680655+ (Tribonema minus UTEX_B_3156 ) ATGCGACACAGGTCACGCGGCGCCGCACTCATCACGCTGGGCGAGGTATG
TGACGTGCGGCACCGACGCAATAGCGTGGACATCCAGTTGCCCACACTTC
CCTGACACTCTTTGAAAGAATTTTACTCATGATCACTCACAACATTGTGC
TGCAGCGAACACTGTGATTCACTGCTGTCAAGTGCTCATGTTGCTATGTA
CCACCTAGCTGTGTCACAGCCTGCGCTGTGCTGTATGTGTTGAGCCAACT
TGCACCGATGCGGCTGGCGGCCTTTCAAGCCACGCTTGCGAATAAAGCTC
AACATACACTGTGTGCATGTATGCAAGCGTATCTGATGGCGTTGCTCTGT
ATGACGTCGCCTCAGACTGGTAACAATGGGCGCATGAGTGAGGGCCACTG
CCAGACGCAATCCACTTTAAGCAAATTGGTACATACTTCTCCGCCAATGC
AATCTTCAAGTGCATTATGCCGGTCATGTCAAATCTTCCAGGAAGTGGCC
ATTTGCTGCACTGGCACAGCTGTGTGACTGGCGGGTGCATGATGCATGCT
TGGAAGCACGCGATTCGAAGCATGAACTTGCATGATCCCCTGCGTCTGTG
GCTGCTACCAGGTCTCGTTGGTATAACATTGACTGAGAGCATTGCACAAC
TCCTTCTGCCTGTGGCCATCATGCATTCAAGTTGCGACAAAGGTCAATAC
CAGGTCTCACTGACCTTAGTGATTGCTCTTTCTTGGACGTATGCTGCAGG
GTGCCGGCATCGTGAGTGCACCTGCTGCTGCTACTGGTGGCACAACAACA
GGAAGCACCACAGACAAACCCGTAGATGGCAACCTTGGTTCCCATAAGAC
CGACAGGCCAACTTCACCAACAGACAACGATGGAGGTCTGTCATCCACCG
CTAGTACAGTTTCAAGTGCCGCCGACGGACCCTCAGCCAACAATGGCGAT
CAAGCCACAGACAGTGATAATAACGATGCAGCTTCTACAGGCAGTGCATC
GCACTTGGTAGTGAGCGTTGCTTTCCAGCTGCTGCTAATGAACGGCCTAG
CGTTGCTGGTTTCATGACAAGACCTTTACGTGCAGCGGACACGATTCAGC
ACTAGTGCGTCCGGACATGCTAAGCAGTAGAGTTGAATTTGTGGTAGTAC
TGGTCATTGTTGTGAGGCTTATGTGGCCTCTGGGATGTTGGGACTCAACA
CAGAGCATGCTGTTTGCAGCAGCTCTCTCAGTTCAAGAGATAGTTTGTCA
GTACATCACTGGCACCTTCTCTGACAACAACACTTTGAATAAACACATGA
CATGACCAACCACAGCCAGTCTGAATGCGCACATGTGCTTGTGCAGTTTT
TGCCTGCGTGCAAGCATGTGCGCCTCTGATATCATGCATTGACGCTTCTA
ATGCATCATGTAGTCGCCTGGCACTGGGACACATCTCAATTTCAGATGAG
CGAAGCACTTTCTTGGTTTCAGGCGTTCAACACGGCTTCCCCTGTTCACT
GCACAACTCATGCATACATTGGTAGAGTTTTTCCCATTTGTTTTGGTGGC
GTGTTCAAACCTCACCAACTTGGGGCGTTATACTTTCGATGTCTTTGTAT
AGTTACGAAACAAGCCCCTTCTGAGCAAGCAGAACCGCGCTGTGCAAGCA
GCAGTGCACCAAACGCCACCAGATCCTTTGCAAGAGTGATTGTTGTTCAA
GTGCAGGCCAGGCAGGTGACGCCCCACTCGTCACTGCTCAACAACCCCTT
GCATAGGGGACACGCAATGCTTCACGACCCCCCCCCCCGGGCTCCCAACG
AATTGCAGAGACCTAGCGAGTTGCAAAGGGGACGCGCAAATTGGACATCG
TGGCAAAGGCCAGAAGACGCCATGCGGTGACTGCTGGCAAGCAAGTGAGG
ATACTGGCAAATATAGGTATGGAGTAGGTCCAGAGCATCGAGATCAGCTA
GCTGTCATTGCCAAGATCTGCACTGCTGCTCCTGGCATGTGCGCAGTTGC
AGGCGCAAGCAACGTGCCCACCAGTGCCGAGAGAGCGCTGGCGCAAGTGA
CGCGCCAGCCTCTGTCGAAAGGGCGTAGCCGAAAGAGCGCAGGCGCGCGT
AACGCGCCCGCCGCTGCTAAAGCGCGCAGGCGCGGGAGAGCGCAGACGCG
GGTAACGCGCTCGCCGCTGCCGAATGAACGCGGGCACGAGCAACTTGAAC
GCGCCCGTTGCCGGAAGCACCGGTTTGAGTAACGCGCCCGTCGCTGAAAG
AACTCAGGCTCAAATAACGCGCCCATTGCCAAAAGAGTGCCGGCGCGAGT
AACACGCCAGCTACTGCCAAAAGTGCACAGGCGCAAGTAACGCGCCCGTC
GCCAATGAAGCGCAGGCGCGAGTAACGTATGCAGGCAACTCGGAGTGGTC
GCTGCCAACGTCATGCTGCCAGTCATGATGCGCCCCCGCTGTGCAGAGCT
TAATATGCACGCGGGCGCATTTGATCTGGAGCCGGTGAGTTACTGCGCGG
GCGGACGTTTGGTCTGCGCGCCGGCTCGCGCAGAAGGTGGTTTGCACCGC
TGCGGTGACCCCTACTCCAGCCATACAGCTGCAGCAGCAGGGAAGGGGGG
GGCAGCAGCTCAGCAACAGCGACCACACACAGCATGGCGATGGTGGCGGC
CTGCGCGTGGCGCGCAACGGCAGCACCGCGGCGGCGCCACCGCTCGGCGA
TGGCGACGGCGGCCGTGGTGGAGGGCGTCGCGCAGTGCCACCAGCGTCGG
CGGCGGCAGCGCTGCGGCTGCGGCAGCTCAGCTCTGCAGAAATTTCTCCA
CTTTTTTAAAGCACAATACATACCCCACGACGGGCTCTGTTTAGCTAACG
CAGTTGCGGCCCCAACGCGCCTCTTTCGCAGCAGCTGGCCCTGGACGAGG
AGAGGCGGAAGCGCGCACGGCACGGCCGTCAGCGGTCATGCGCTTCTCAG
AACTCATGGCTGGGCACATGGTGAGCGAGGTTCCTTTACGTGCAAATTGT
ATACAAGTTGCGCCGAGGCTTATTTTGCACCGCGCGACGGCGTGCTCGCC
AGGGACGGCCGCGCTGCGTGGCGGAAAGAGGCGTACAGCTCTTATTGAGT
GTGGTCGTGCCTTGCAAGACCTGTCGTAAGCAGTTGCTTCCGGACCCTCT
GCCGTTCGAGGGGCAAATTTTACGGTAGCGTGCGTTGGCTCCGAGCAGCG
CTAGCGCAGCGGTAGCACCTTCAGCGCATCTCAATGGAACAAGTGAGGAT
TTGACAGCTGATCCAATACCACACGCTTGCTTCTCGAATATTGGCAATGG
TGGCGAACTGCACAAAGTCCACACTTTCGCAGAGTTCTGACCCCTGCTGT
CTGGCACTGCTGCCTGCTGTCGTTGACAGGCCATGAAGCTGGAAGGCAGC
GGCGAGCAGCATTCTAGGGGTCTCAAGGCCACTAATACATGCGGCGACTG
CATGATTCCCGCTGTGGAGCAAGCTCTGCTAGACGCGTCCAGCCAGTTGG
TGATCTGCGATCCCAAGTGCTTGACGGGCACGGGTGACACGACGGGTTGC
GATTACAGACAGCGTTACCAGGGCTGTAGGCTTTGCACTACAGATCCGAA
GCAGAAAGGATTCATCTGTCCAAAAGGGTCCGCTGGAGGCTGCGCAATTG
ACTACAAACAGTGTGGCGGAAGTGAGTATAATGAGGGAGAATTCACCACT
GTGTTGCTGACTTTTATGGCGGCTTACGCCGATGGTGCGGCAATATCCAC
TAGCGCTGCTTCAAACACACAACATGGACGACGCCAATGGTGCCTTGCTG
CAGGCTAGGTGCTGTGGTTCGAGGCCTCAGATTCTGTGTAGCCAGCTTCG
CTTGACGGCAACCCATGGCAGCGCAGTACCACATTGCAGTGGGCGTAGCA
CGCAAGCGCGTAAACGCAGCTGCTCTTTTCATGCATCTGAGGCCTGATAC
CATTGCGGACATAACCCCACCTCCTGCTGATGTTGACAATGAACCGGTTT
ATTGTTCGTCGCGTGCAGGCGGATGGAATGGGCCACTGTGCTGCCAACCT
GGAGTATTTTGCGTGGAGCAAAATCCTGGCTACTTTCAGGTGAGCATATG
TGGAAGTAATGTTTTTGGACCCGACATGGCAGCGCCACTGCTTCAGGAAC
GAAGTTTCCCTGGTGTGTGTTTGCTCTCTTGTGCTAGAAGCTAAGCGGGT
GGGTGACAGCGCCAGGCACCGCTGTTGTGCACATTTGTGCACCGCAGTTG
CTGCTCATATATAGCTTCTACCACAACAGCAACGGCACCGCAGCATTTTA
AAAGCTGATGCATAACGTACATGCACTTAGGTCACTGGAGGCATCAGACC
GACAGTCCATGGTCCTTGTAACCTCTGCTTGTCAGCCATGCTAAACGTGC
AGCACTTGCCTGCTGAGCAGCACACGGTTTGTTGGAGGCTGCTGCTCATA
GCATCGCTGCTCTGCACACGACTCACTTCTCACGAGTGTACCCGCAACGC
ATGTCACCCACTGGTGTACCGCAGTGTCTCCCGGACGACTCAAAACCCGA
CAAGGGCACACCTGCACCAACCGCGGCGGCGACGGGCAAGCCAGTCAAGC
CAAAGCCAGGCGGCAAAACCCCTGCCCCGACCCCCGCCCCAAGCCCTGCC
CCCACCGC back to topCoding sequence (CDS) from alignment at Contig_55:675998..680655+ >mRNA_7321 ID=mRNA_7321|Name=jgi.p|Trimin1|350085|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=882bp|location=Sequence derived from alignment at Contig_55:675998..680655+ (Tribonema minus UTEX_B_3156 ) ATGCGACACAGGTCACGCGGCGCCGCACTCATCACGCTGGGCGAGGCGCG GGAGAGCGCAGACGCGGAGCTTAATATGCACGCGGGCGCATTTGATCTGG AGCCGAAGGTGGTTTGCACCGCTGCGGTGACCCCTACTCCAGCCATACAG CTGCAGCAGCAGGGAAGGGGGGGGCAGCAGCTCAGCAACAGCGACCACAC ACAGCATGGCGATGGTGGCGGCCTGCGCGTGGCGCGCAACGGCAGCACCG CGGCGGCGCCACCGCTCGGCGATGGCGACGGCGGCCGTGGTGGAGGGCCA GCTGGCCCTGGACGAGGAGAGGCGGAAGCGCGCACGGCACGGCCGTCAGC GGTCATGCGCTTCTCAGAACTCATGGCTGGGCACATGGCCATGAAGCTGG AAGGCAGCGGCGAGCAGCATTCTAGGGGTCTCAAGGCCACTAATACATGC GGCGACTGCATGATTCCCGCTGTGGAGCAAGCTCTGCTAGACGCGTCCAG CCAGTTGGTGATCTGCGATCCCAAGTGCTTGACGGGCACGGGTGACACGA CGGGTTGCGATTACAGACAGCGTTACCAGGGCTGTAGGCTTTGCACTACA GATCCGAAGCAGAAAGGATTCATCTGTCCAAAAGGGTCCGCTGGAGGCTG CGCAATTGACTACAAACAGTGTGGCGGAAGCGGATGGAATGGGCCACTGT GCTGCCAACCTGGAGTATTTTGCGTGGAGCAAAATCCTGGCTACTTTCAG TGTCTCCCGGACGACTCAAAACCCGACAAGGGCACACCTGCACCAACCGC GGCGGCGACGGGCAAGCCAGTCAAGCCAAAGCCAGGCGGCAAAACCCCTG CCCCGACCCCCGCCCCAAGCCCTGCCCCCACC back to top
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