mRNA_7272 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|156174
Unique NamemRNA_7272
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|156174 vs. uniprot
Match: A0A835YP76_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YP76_9STRA)

HSP 1 Score: 419 bits (1077), Expect = 6.180e-148
Identity = 219/219 (100.00%), Postives = 219/219 (100.00%), Query Frame = 1 
Query:    1 AVLDAAEAALVSCRFAEASSLCREHLEATLHPDGNGTSTPVSSSSTSLHLGDLSVAVADLQECDQLIAVLLQCGFELGRKNEYRFCHSYYKSRALKHPIPLAIALLWLKLRLEEGELEFTRQALQDMRTALRDDPSGTHSYAQISEMLVADVLLPAGDFAAAKHVLSESTVSAHMEPELLTAMLHAAYAAADTAKGNGHGANHGTSAIDTSSSRGPPGR 657
            AVLDAAEAALVSCRFAEASSLCREHLEATLHPDGNGTSTPVSSSSTSLHLGDLSVAVADLQECDQLIAVLLQCGFELGRKNEYRFCHSYYKSRALKHPIPLAIALLWLKLRLEEGELEFTRQALQDMRTALRDDPSGTHSYAQISEMLVADVLLPAGDFAAAKHVLSESTVSAHMEPELLTAMLHAAYAAADTAKGNGHGANHGTSAIDTSSSRGPPGR
Sbjct:    1 AVLDAAEAALVSCRFAEASSLCREHLEATLHPDGNGTSTPVSSSSTSLHLGDLSVAVADLQECDQLIAVLLQCGFELGRKNEYRFCHSYYKSRALKHPIPLAIALLWLKLRLEEGELEFTRQALQDMRTALRDDPSGTHSYAQISEMLVADVLLPAGDFAAAKHVLSESTVSAHMEPELLTAMLHAAYAAADTAKGNGHGANHGTSAIDTSSSRGPPGR 219
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BLAST of jgi.p|Trimin1|156174 vs. uniprot
Match: D7FUT3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUT3_ECTSI)

HSP 1 Score: 91.3 bits (225), Expect = 6.160e-18
Identity = 88/265 (33.21%), Postives = 125/265 (47.17%), Query Frame = 1 
Query:    1 AVLDAAEAALVSCRFAEASSLCR----EHLEATLHPDGNGTSTPV-----SSSSTSLHLGDLSVAVADLQ------EC---DQLIAVLLQCGFELGRKNEYRFCHSYYKSRALKHPIPLAIALLWLKLRLEEGELEFTRQALQDMR--------------TALRDDPSGTHS---------YAQISEMLVADVLLPAGDFAAAKHVLSESTVSAHMEPELLTAMLHAAYAAA-----DTAKGNGHGANHGTSAIDTSSSRGPPGR 657
            A LD AE   VSCRF EA+ +C     E    T  P  N +ST       +SS +    G   V   D Q      EC   D ++AVLLQCGFEL R  E+  C ++Y +      IP A+A+LWL+LRL  GELE  R+ L  +R              TA   D    HS         Y++ +EMLV  +++P G+F  A+ ++S     A++ P+  + +L A   +A     ++    G G+  G ++   S SR P GR
Sbjct:   24 AKLDLAEELFVSCRFTEAARVCSAVLGEGSSCTSSPRRNFSSTSTXXXXXTSSGSHDPAGSALVVAFDDQVIAPVGECGTSDLIVAVLLQCGFELQRTEEWGRCRAFYGTT---RAIPFAVAILWLRLRLAGGELELVRRILWQLRAELGEEVRRCTPAVTANNSDFERAHSGAVTPAVANYSEATEMLVVQIMVPCGEFTEAEALVSSD---AYLSPKDKSQLLKACEQSASERERESGAATGEGST-GNASNTASGSRSPCGR 281
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BLAST of jgi.p|Trimin1|156174 vs. uniprot
Match: A0A6H5K3P0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3P0_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 1.590e-17
Identity = 68/207 (32.85%), Postives = 104/207 (50.24%), Query Frame = 1 
Query:    1 AVLDAAEAALVSCRFAEASSLCREHLE---ATLHPDGNGTSTPV-------------SSSSTSLHLGDLSVA-VADLQECDQLIAVLLQCGFELGRKNEYRFCHSYYKSRALKHPIPLAIALLWLKLRLEEGELEFTRQALQDMRTALRDD-----PSGTHS------------------YAQISEMLVADVLLPAGDFAAAKHVLS 501
            A LD AE   VSCRF EA+++C   L    +   P+ N +ST               + S+  + +GD  +A V +    D ++AVLLQCGFEL R  E+  C ++Y +      +P A+A+LWL+LRL  GELE  R+ L  +R  L ++     P+ T +                  Y++ +EMLV  +L+P G+F  A  ++S
Sbjct:   24 AKLDLAEELFVSCRFTEAATICSTALSEDSSYTSPNSNFSSTXXXXXXXXXXGSHDSAGSALVVAIGDHVIAPVGECGTSDLIVAVLLQCGFELQRTEEWARCRAFYGTT---RAVPFAVAILWLRLRLAGGELELVRKNLSQLRAVLGEEVRRCTPTVTANNSDFQRADSRAVTQALANYSEATEMLVVQILVPCGEFTEAVALVS 227
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|156174 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A835YP76_9STRA6.180e-148100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
D7FUT3_ECTSI6.160e-1833.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K3P0_9PHAE1.590e-1732.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_55contigContig_55:353276..353932 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|156174|gw1.55.209.1
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-06_001000.1
TranscriptId156496
TrackFilteredModels1
ProteinId156174
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|156174gene_7272Tribonema minus UTEX_B_3156 geneContig_55 353276..353932 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_7272_1exon_7272_1Tribonema minus UTEX_B_3156 exonContig_55 353276..353932 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_7272CDS_7272Tribonema minus UTEX_B_3156 CDSContig_55 353276..353932 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|156174Trimin1|156174|gw1.55.209.1Tribonema minus UTEX_B_3156 polypeptideContig_55 353276..353932 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_7272 ID=mRNA_7272|Name=jgi.p|Trimin1|156174|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=657bp|location=Sequence derived from alignment at Contig_55:353276..353932- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GCTGTTCTGGACGCCGCAGAGGCAGCGCTGGTCTCATGCCGCTTCGCAGA
AGCCTCGTCCCTGTGCCGTGAGCACTTGGAAGCCACACTACACCCGGATG
GCAATGGCACCTCAACACCAGTGTCGAGCAGTAGTACCTCTCTTCACCTA
GGAGATTTGAGCGTGGCTGTAGCAGACTTGCAGGAATGCGACCAGCTCAT
TGCAGTTTTGCTACAGTGTGGCTTCGAGCTAGGCAGGAAGAACGAGTATC
GCTTCTGCCACTCGTACTACAAGTCCCGCGCCTTGAAGCACCCCATTCCA
CTCGCCATAGCGCTGCTGTGGCTGAAGCTGAGGCTGGAGGAGGGAGAGCT
GGAGTTCACACGACAGGCGCTGCAGGACATGCGCACTGCACTTCGTGACG
ACCCATCAGGCACCCACTCTTACGCTCAGATCAGCGAGATGCTGGTCGCG
GACGTGCTACTGCCAGCTGGCGACTTCGCAGCCGCCAAGCACGTTCTCAG
TGAGAGCACGGTCAGCGCGCACATGGAGCCAGAGCTGCTGACCGCCATGC
TACACGCTGCGTACGCGGCGGCGGACACCGCCAAGGGCAATGGCCACGGC
GCAAACCACGGTACCTCCGCCATCGACACATCAAGCAGCCGAGGGCCGCC
CGGCCGG
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protein sequence of jgi.p|Trimin1|156174

>Trimin1|156174|gw1.55.209.1 ID=Trimin1|156174|gw1.55.209.1|Name=jgi.p|Trimin1|156174|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=219bp
AVLDAAEAALVSCRFAEASSLCREHLEATLHPDGNGTSTPVSSSSTSLHL
GDLSVAVADLQECDQLIAVLLQCGFELGRKNEYRFCHSYYKSRALKHPIP
LAIALLWLKLRLEEGELEFTRQALQDMRTALRDDPSGTHSYAQISEMLVA
DVLLPAGDFAAAKHVLSESTVSAHMEPELLTAMLHAAYAAADTAKGNGHG
ANHGTSAIDTSSSRGPPGR
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mRNA from alignment at Contig_55:353276..353932-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7272 ID=mRNA_7272|Name=jgi.p|Trimin1|156174|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=657bp|location=Sequence derived from alignment at Contig_55:353276..353932- (Tribonema minus UTEX_B_3156 )
GCTGTTCTGGACGCCGCAGAGGCAGCGCTGGTCTCATGCCGCTTCGCAGA
AGCCTCGTCCCTGTGCCGTGAGCACTTGGAAGCCACACTACACCCGGATG
GCAATGGCACCTCAACACCAGTGTCGAGCAGTAGTACCTCTCTTCACCTA
GGAGATTTGAGCGTGGCTGTAGCAGACTTGCAGGAATGCGACCAGCTCAT
TGCAGTTTTGCTACAGTGTGGCTTCGAGCTAGGCAGGAAGAACGAGTATC
GCTTCTGCCACTCGTACTACAAGTCCCGCGCCTTGAAGCACCCCATTCCA
CTCGCCATAGCGCTGCTGTGGCTGAAGCTGAGGCTGGAGGAGGGAGAGCT
GGAGTTCACACGACAGGCGCTGCAGGACATGCGCACTGCACTTCGTGACG
ACCCATCAGGCACCCACTCTTACGCTCAGATCAGCGAGATGCTGGTCGCG
GACGTGCTACTGCCAGCTGGCGACTTCGCAGCCGCCAAGCACGTTCTCAG
TGAGAGCACGGTCAGCGCGCACATGGAGCCAGAGCTGCTGACCGCCATGC
TACACGCTGCGTACGCGGCGGCGGACACCGCCAAGGGCAATGGCCACGGC
GCAAACCACGGTACCTCCGCCATCGACACATCAAGCAGCCGAGGGCCGCC
CGGCCGG
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Coding sequence (CDS) from alignment at Contig_55:353276..353932-

>mRNA_7272 ID=mRNA_7272|Name=jgi.p|Trimin1|156174|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=657bp|location=Sequence derived from alignment at Contig_55:353276..353932- (Tribonema minus UTEX_B_3156 )
GCTGTTCTGGACGCCGCAGAGGCAGCGCTGGTCTCATGCCGCTTCGCAGA
AGCCTCGTCCCTGTGCCGTGAGCACTTGGAAGCCACACTACACCCGGATG
GCAATGGCACCTCAACACCAGTGTCGAGCAGTAGTACCTCTCTTCACCTA
GGAGATTTGAGCGTGGCTGTAGCAGACTTGCAGGAATGCGACCAGCTCAT
TGCAGTTTTGCTACAGTGTGGCTTCGAGCTAGGCAGGAAGAACGAGTATC
GCTTCTGCCACTCGTACTACAAGTCCCGCGCCTTGAAGCACCCCATTCCA
CTCGCCATAGCGCTGCTGTGGCTGAAGCTGAGGCTGGAGGAGGGAGAGCT
GGAGTTCACACGACAGGCGCTGCAGGACATGCGCACTGCACTTCGTGACG
ACCCATCAGGCACCCACTCTTACGCTCAGATCAGCGAGATGCTGGTCGCG
GACGTGCTACTGCCAGCTGGCGACTTCGCAGCCGCCAAGCACGTTCTCAG
TGAGAGCACGGTCAGCGCGCACATGGAGCCAGAGCTGCTGACCGCCATGC
TACACGCTGCGTACGCGGCGGCGGACACCGCCAAGGGCAATGGCCACGGC
GCAAACCACGGTACCTCCGCCATCGACACATCAAGCAGCCGAGGGCCGCC
CGGCCGG
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