mRNA_7234 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|153133
Unique NamemRNA_7234
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|153133 vs. uniprot
Match: A0A836CBI6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBI6_9STRA)

HSP 1 Score: 368 bits (945), Expect = 7.170e-129
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 1 
Query:    1 VAMSSRNDAQAAVSVSRAWQPRNCINLLIGDARRKQIMPLVVHLLPQDLAWWNASSDKLWEELQRLLKDQVITPYLATPSAVTGDEEEEKSTDAISTSRRKARRGEKCVQGEGLQFTFRFRPTKPVYSIITFNSVPAATQQQQTASKQAAPAYASLPLNEATLLAWVFKFDPANPYAPLPTETVEVF 561
            VAMSSRNDAQAAVSVSRAWQPRNCINLLIGDARRKQIMPLVVHLLPQDLAWWNASSDKLWEELQRLLKDQVITPYLATPSAVTGDEEEEKSTDAISTSRRKARRGEKCVQGEGLQFTFRFRPTKPVYSIITFNSVPAATQQQQTASKQAAPAYASLPLNEATLLAWVFKFDPANPYAPLPTETVEVF
Sbjct:    1 VAMSSRNDAQAAVSVSRAWQPRNCINLLIGDARRKQIMPLVVHLLPQDLAWWNASSDKLWEELQRLLKDQVITPYLATPSAVTGDEEEEKSTDAISTSRRKARRGEKCVQGEGLQFTFRFRPTKPVYSIITFNSVPAATQQQQTASKQAAPAYASLPLNEATLLAWVFKFDPANPYAPLPTETVEVF 187
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BLAST of jgi.p|Trimin1|153133 vs. uniprot
Match: D7G235_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G235_ECTSI)

HSP 1 Score: 108 bits (271), Expect = 2.190e-25
Identity = 65/198 (32.83%), Postives = 112/198 (56.57%), Query Frame = 1 
Query:   19 NDAQAAVSVSRAWQPRNCINLLIGDARRKQIMPLVVHLLPQDLAWWNASSDKLWEELQRLLKDQVITPYLATPSAVTGDEEEEKSTDAISTSRRKARRGEKCVQGEGLQFTFRFRPTKPVYSIITF--NSVPAATQQQQTASKQAA---------------PAYASLPLNEATLLAWVFKFDPANPYAPLPTETVEVF 561
            +D +   + +  WQ R  IN + G +R + + P+V+H+LP+D+ W++A +  L++EL+ LL+++VI+      +   GD++ E        SR++AR+ E C+QGE LQFT+R+R T P Y+++++  + +  A +   +A                    PA+  LPL+E+TLL WV+ FD  +PY P+P E    F
Sbjct:    7 DDEEETAASNVRWQGRTLINFVAGRSRLRTL-PVVIHILPKDIGWFSADAS-LFDELKLLLRERVIS------ATGNGDKDAE-----APKSRKRARKEEVCIQGERLQFTYRYRKTLPRYTVLSYTGDDIERANRGSSSAGSSKGKRCVGSNSXXXXXXXPAFRHLPLSESTLLVWVYPFDKDDPYRPVPNEAALQF 191
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|153133 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A836CBI6_9STRA7.170e-129100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
D7G235_ECTSI2.190e-2532.83Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_55contigContig_55:7273..7833 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|153133|gw1.55.176.1
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-11_003670.1
TranscriptId153455
TrackFilteredModels1
ProteinId153133
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|153133gene_7234Tribonema minus UTEX_B_3156 geneContig_55 7273..7833 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_7234_1exon_7234_1Tribonema minus UTEX_B_3156 exonContig_55 7273..7833 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_7234CDS_7234Tribonema minus UTEX_B_3156 CDSContig_55 7273..7833 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|153133Trimin1|153133|gw1.55.176.1Tribonema minus UTEX_B_3156 polypeptideContig_55 7273..7833 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_7234 ID=mRNA_7234|Name=jgi.p|Trimin1|153133|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=561bp|location=Sequence derived from alignment at Contig_55:7273..7833+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GTAGCAATGAGCTCCCGAAACGACGCACAGGCTGCTGTCTCGGTCAGCAG
AGCGTGGCAGCCCCGCAACTGCATTAACCTGCTAATTGGCGACGCCAGGA
GAAAGCAGATCATGCCTCTTGTAGTGCACCTGCTTCCACAAGATCTCGCA
TGGTGGAATGCATCCAGTGACAAGCTGTGGGAAGAGCTGCAGCGGCTGCT
CAAGGATCAGGTTATTACGCCCTATCTGGCCACGCCATCTGCAGTCACGG
GTGACGAGGAGGAAGAGAAGAGCACCGACGCCATTTCCACCAGCCGCAGG
AAAGCGCGCAGAGGCGAGAAGTGCGTCCAGGGCGAGGGACTGCAGTTCAC
GTTCCGCTTTCGGCCCACCAAACCCGTCTATTCAATAATCACATTCAACT
CCGTTCCGGCTGCTACTCAGCAGCAACAGACTGCCAGCAAACAAGCAGCG
CCGGCATACGCATCCCTCCCCTTGAATGAAGCCACGCTTCTTGCGTGGGT
GTTCAAGTTCGATCCAGCAAATCCGTATGCGCCGCTGCCCACCGAAACAG
TAGAAGTCTTT
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protein sequence of jgi.p|Trimin1|153133

>Trimin1|153133|gw1.55.176.1 ID=Trimin1|153133|gw1.55.176.1|Name=jgi.p|Trimin1|153133|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=187bp
VAMSSRNDAQAAVSVSRAWQPRNCINLLIGDARRKQIMPLVVHLLPQDLA
WWNASSDKLWEELQRLLKDQVITPYLATPSAVTGDEEEEKSTDAISTSRR
KARRGEKCVQGEGLQFTFRFRPTKPVYSIITFNSVPAATQQQQTASKQAA
PAYASLPLNEATLLAWVFKFDPANPYAPLPTETVEVF
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mRNA from alignment at Contig_55:7273..7833+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7234 ID=mRNA_7234|Name=jgi.p|Trimin1|153133|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=561bp|location=Sequence derived from alignment at Contig_55:7273..7833+ (Tribonema minus UTEX_B_3156 )
GTAGCAATGAGCTCCCGAAACGACGCACAGGCTGCTGTCTCGGTCAGCAG
AGCGTGGCAGCCCCGCAACTGCATTAACCTGCTAATTGGCGACGCCAGGA
GAAAGCAGATCATGCCTCTTGTAGTGCACCTGCTTCCACAAGATCTCGCA
TGGTGGAATGCATCCAGTGACAAGCTGTGGGAAGAGCTGCAGCGGCTGCT
CAAGGATCAGGTTATTACGCCCTATCTGGCCACGCCATCTGCAGTCACGG
GTGACGAGGAGGAAGAGAAGAGCACCGACGCCATTTCCACCAGCCGCAGG
AAAGCGCGCAGAGGCGAGAAGTGCGTCCAGGGCGAGGGACTGCAGTTCAC
GTTCCGCTTTCGGCCCACCAAACCCGTCTATTCAATAATCACATTCAACT
CCGTTCCGGCTGCTACTCAGCAGCAACAGACTGCCAGCAAACAAGCAGCG
CCGGCATACGCATCCCTCCCCTTGAATGAAGCCACGCTTCTTGCGTGGGT
GTTCAAGTTCGATCCAGCAAATCCGTATGCGCCGCTGCCCACCGAAACAG
TAGAAGTCTTT
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Coding sequence (CDS) from alignment at Contig_55:7273..7833+

>mRNA_7234 ID=mRNA_7234|Name=jgi.p|Trimin1|153133|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=561bp|location=Sequence derived from alignment at Contig_55:7273..7833+ (Tribonema minus UTEX_B_3156 )
GTAGCAATGAGCTCCCGAAACGACGCACAGGCTGCTGTCTCGGTCAGCAG
AGCGTGGCAGCCCCGCAACTGCATTAACCTGCTAATTGGCGACGCCAGGA
GAAAGCAGATCATGCCTCTTGTAGTGCACCTGCTTCCACAAGATCTCGCA
TGGTGGAATGCATCCAGTGACAAGCTGTGGGAAGAGCTGCAGCGGCTGCT
CAAGGATCAGGTTATTACGCCCTATCTGGCCACGCCATCTGCAGTCACGG
GTGACGAGGAGGAAGAGAAGAGCACCGACGCCATTTCCACCAGCCGCAGG
AAAGCGCGCAGAGGCGAGAAGTGCGTCCAGGGCGAGGGACTGCAGTTCAC
GTTCCGCTTTCGGCCCACCAAACCCGTCTATTCAATAATCACATTCAACT
CCGTTCCGGCTGCTACTCAGCAGCAACAGACTGCCAGCAAACAAGCAGCG
CCGGCATACGCATCCCTCCCCTTGAATGAAGCCACGCTTCTTGCGTGGGT
GTTCAAGTTCGATCCAGCAAATCCGTATGCGCCGCTGCCCACCGAAACAG
TAGAAGTCTTT
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