Trimin1|354745|estExt_Genemark1.C_Ctg_5420003 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|354745
Unique NameTrimin1|354745|estExt_Genemark1.C_Ctg_5420003
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length183
Homology
BLAST of jgi.p|Trimin1|354745 vs. uniprot
Match: A0A835YSA5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSA5_9STRA)

HSP 1 Score: 344 bits (882), Expect = 2.060e-119
Identity = 182/182 (100.00%), Postives = 182/182 (100.00%), Query Frame = 0
Query:    1 MVFKLGPPKATSAASSRPTAGATTKGLKKTPVASDSSWNGPAVERRRKAQAIAAKKAAEKAAEAGVFSPEQYEKFLDARATVPSGASNYWQRIADKVPGQNAENCKKMASQLLFEKAAGTKKNFFGGYVETIEVKDYVDEDADVMGKLATCSALARSDVQQAHAQCIVTTQSPVSRMHVKSL 182
            MVFKLGPPKATSAASSRPTAGATTKGLKKTPVASDSSWNGPAVERRRKAQAIAAKKAAEKAAEAGVFSPEQYEKFLDARATVPSGASNYWQRIADKVPGQNAENCKKMASQLLFEKAAGTKKNFFGGYVETIEVKDYVDEDADVMGKLATCSALARSDVQQAHAQCIVTTQSPVSRMHVKSL
Sbjct:    1 MVFKLGPPKATSAASSRPTAGATTKGLKKTPVASDSSWNGPAVERRRKAQAIAAKKAAEKAAEAGVFSPEQYEKFLDARATVPSGASNYWQRIADKVPGQNAENCKKMASQLLFEKAAGTKKNFFGGYVETIEVKDYVDEDADVMGKLATCSALARSDVQQAHAQCIVTTQSPVSRMHVKSL 182          
BLAST of jgi.p|Trimin1|354745 vs. uniprot
Match: A0A835YZY5_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZY5_9STRA)

HSP 1 Score: 280 bits (717), Expect = 5.730e-94
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 0
Query:    1 MVFKLGPPKATSAASSRPTAGATTKGLKKTPVASDSSWNGPAVERRRKAQAIAAKKAAEKAAEAGVFSPEQYEKFLDARATVPSGASNYWQRIADKVPGQNAENCKKMASQLLFEKAAGTKKNFFGGYVETIEVKDYVDEDADVMGKLA 149
            MVFKLGPPKATSAASSRPTAGATTKGLKKTPVASDSSWNGPAVERRRKAQAIAAKKAAEKAAEAGVFSPEQYEKFLDARATVPSGASNYWQRIADKVPGQNAENCKKMASQLLFEKAAGTKKNFFGGYVETIEVKDYVDEDADVMGKLA
Sbjct:   46 MVFKLGPPKATSAASSRPTAGATTKGLKKTPVASDSSWNGPAVERRRKAQAIAAKKAAEKAAEAGVFSPEQYEKFLDARATVPSGASNYWQRIADKVPGQNAENCKKMASQLLFEKAAGTKKNFFGGYVETIEVKDYVDEDADVMGKLA 194          
BLAST of jgi.p|Trimin1|354745 vs. uniprot
Match: D8LSK3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSK3_ECTSI)

HSP 1 Score: 117 bits (294), Expect = 8.600e-30
Identity = 69/136 (50.74%), Postives = 92/136 (67.65%), Query Frame = 0
Query:   17 RPTAGATTKGLKKTPVASDSSWNGPAVERRRKAQAIAAKKAAEKAA---EAGVFSPEQYEKFLDARATVPSGASN-YWQRIADKVPGQNAENCKKMASQLLFEKAAGTKKNFFGGYVETIEVKDYVDEDADVMGKL 148
            RP AG T KG KKT +  D +   PA +RR + +A A ++ + KA+     GVF+P Q+E F  AR  VPSG  + YW++IA +VPGQNA  CK++A  +LFE A GTK N+FGGY+ETIE  DYVD +AD+M K+
Sbjct:   69 RPMAGGTVKGGKKTKITQDVT---PA-QRRAQEKATAIRERSRKASTRKSEGVFTPPQFEAFKKARKEVPSGKGDAYWEKIAARVPGQNAAACKRVAESMLFEAAVGTKSNYFGGYIETIETPDYVDPEADIMFKI 200          
BLAST of jgi.p|Trimin1|354745 vs. uniprot
Match: W7TIQ4_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TIQ4_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 4.410e-21
Identity = 49/90 (54.44%), Postives = 58/90 (64.44%), Query Frame = 0
Query:   65 GVFSPEQYEKFLDARATVPSGASNYWQRIADKVPGQNAENCKKMASQLLFEKAAGTKKNFFGGYVETIEVKDYVDEDADVMGKLATCSAL 154
            G F+ EQ +    AR  VPS A++YWQ+IA KVPGQ AE CK M +QLL +KA GT KNFFGGYVE  E K  VD +A V  +L     L
Sbjct:  127 GYFTNEQLQALEVARREVPSSAASYWQKIASKVPGQTAETCKAMTNQLLLDKARGTGKNFFGGYVEVKETKMVVDTEATVGKRLKAAFGL 216          
BLAST of jgi.p|Trimin1|354745 vs. uniprot
Match: A0A7S2X777_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2X777_9EUKA)

HSP 1 Score: 67.4 bits (163), Expect = 2.700e-10
Identity = 39/83 (46.99%), Postives = 53/83 (63.86%), Query Frame = 0
Query:   66 VFSPEQYEKFLDARATVPSGASN-YWQRIADKV-PGQNAENCKKMASQLLFEKAAGTKKNFFGGYV----ETIEVKDYVDEDA 142
            VF+ +Q  +FL AR  +PSG+ + YWQ++AD+V  G  A  CK++A   LF+KAAGT  NFF  +V    E +E   YVDE A
Sbjct:   91 VFTDKQVARFLQARKELPSGSGDAYWQKVADRVGDGITAYECKRLAQNQLFKKAAGTSSNFFKNFVDVKGEYVE-SGYVDETA 172          
BLAST of jgi.p|Trimin1|354745 vs. uniprot
Match: A0A7S0CYG4_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0CYG4_9EUKA)

HSP 1 Score: 62.4 bits (150), Expect = 1.960e-8
Identity = 41/89 (46.07%), Postives = 51/89 (57.30%), Query Frame = 0
Query:   67 FSPEQYEKFLDARATVPSGASN-YWQRIADKV-PGQNAENCKKMASQLLFEKAAGTKKNFFGGYV----ETIEVKDYVDEDA-DVMGKL 148
            FS  Q  +FL AR  V SGA + YW  IA +V  G     CK++A   LF+KAAGT +NFF  YV    E +E   YVD DA D M ++
Sbjct:  102 FSDAQVSRFLQARKEVKSGAGDAYWDEIARRVGDGVTGYECKRLAQNQLFKKAAGTSQNFFKSYVDVKGEYVE-SGYVDADAPDAMSQM 189          
BLAST of jgi.p|Trimin1|354745 vs. uniprot
Match: A0A0G4FCV5_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4FCV5_VITBC)

HSP 1 Score: 57.0 bits (136), Expect = 1.040e-6
Identity = 26/48 (54.17%), Postives = 32/48 (66.67%), Query Frame = 0
Query:   78 ARATVPSGASNYWQRIADKVPGQNAENCKKMASQLLFEKAAGTKKNFF 125
            AR  VPSGA  YW +IA++VPG+ A  C+      LF +AAGT KNFF
Sbjct:  110 ARREVPSGAFLYWDQIAERVPGKTATQCEDYVRTQLFNRAAGTNKNFF 157          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|354745 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A835YSA5_9STRA2.060e-119100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YZY5_9STRA5.730e-94100.00Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
D8LSK3_ECTSI8.600e-3050.74Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
W7TIQ4_9STRA4.410e-2154.44Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A7S2X777_9EUKA2.700e-1046.99Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
A0A7S0CYG4_9EUKA1.960e-846.07Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
A0A0G4FCV5_VITBC1.040e-654.17Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.10.60coord: 58..119
e-value: 2.9E-8
score: 35.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..46
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 12..37
IPR009057Homeobox-like domain superfamilySUPERFAMILY46689Homeodomain-likecoord: 65..116

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_542contigContig_542:7934..10447 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|354745mRNA_19034Tribonema minus UTEX_B_3156 mRNAContig_542 7934..10850 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|354745|estExt_Genemark1.C_Ctg_5420003 ID=Trimin1|354745|estExt_Genemark1.C_Ctg_5420003|Name=jgi.p|Trimin1|354745|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=183bp
MVFKLGPPKATSAASSRPTAGATTKGLKKTPVASDSSWNGPAVERRRKAQ
AIAAKKAAEKAAEAGVFSPEQYEKFLDARATVPSGASNYWQRIADKVPGQ
NAENCKKMASQLLFEKAAGTKKNFFGGYVETIEVKDYVDEDADVMGKLAT
CSALARSDVQQAHAQCIVTTQSPVSRMHVKSL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009057Homeobox-like_sf