mRNA_19034 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|354745
Unique Name	mRNA_19034
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|354745 vs. uniprot
Match: A0A835YSA5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSA5_9STRA)

HSP 1 Score: 343 bits (881), Expect = 5.340e-117
Identity = 182/182 (100.00%), Postives = 182/182 (100.00%), Query Frame = 1

Query:    1 MVFKLGPPKATSAASSRPTAGATTKGLKKTPVASDSSWNGPAVERRRKAQAIAAKKAAEKAAEAGVFSPEQYEKFLDARATVPSGASNYWQRIADKVPGQNAENCKKMASQLLFEKAAGTKKNFFGGYVETIEVKDYVDEDADVMGKLATCSALARSDVQQAHAQCIVTTQSPVSRMHVKSL 546
            MVFKLGPPKATSAASSRPTAGATTKGLKKTPVASDSSWNGPAVERRRKAQAIAAKKAAEKAAEAGVFSPEQYEKFLDARATVPSGASNYWQRIADKVPGQNAENCKKMASQLLFEKAAGTKKNFFGGYVETIEVKDYVDEDADVMGKLATCSALARSDVQQAHAQCIVTTQSPVSRMHVKSL
Sbjct:    1 MVFKLGPPKATSAASSRPTAGATTKGLKKTPVASDSSWNGPAVERRRKAQAIAAKKAAEKAAEAGVFSPEQYEKFLDARATVPSGASNYWQRIADKVPGQNAENCKKMASQLLFEKAAGTKKNFFGGYVETIEVKDYVDEDADVMGKLATCSALARSDVQQAHAQCIVTTQSPVSRMHVKSL 182

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BLAST of jgi.p|Trimin1|354745 vs. uniprot
Match: A0A835YZY5_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZY5_9STRA)

HSP 1 Score: 280 bits (717), Expect = 8.750e-92
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 1

Query:    1 MVFKLGPPKATSAASSRPTAGATTKGLKKTPVASDSSWNGPAVERRRKAQAIAAKKAAEKAAEAGVFSPEQYEKFLDARATVPSGASNYWQRIADKVPGQNAENCKKMASQLLFEKAAGTKKNFFGGYVETIEVKDYVDEDADVMGKLA 447
            MVFKLGPPKATSAASSRPTAGATTKGLKKTPVASDSSWNGPAVERRRKAQAIAAKKAAEKAAEAGVFSPEQYEKFLDARATVPSGASNYWQRIADKVPGQNAENCKKMASQLLFEKAAGTKKNFFGGYVETIEVKDYVDEDADVMGKLA
Sbjct:   46 MVFKLGPPKATSAASSRPTAGATTKGLKKTPVASDSSWNGPAVERRRKAQAIAAKKAAEKAAEAGVFSPEQYEKFLDARATVPSGASNYWQRIADKVPGQNAENCKKMASQLLFEKAAGTKKNFFGGYVETIEVKDYVDEDADVMGKLA 194

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BLAST of jgi.p|Trimin1|354745 vs. uniprot
Match: D8LSK3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSK3_ECTSI)

HSP 1 Score: 117 bits (294), Expect = 3.380e-28
Identity = 69/136 (50.74%), Postives = 92/136 (67.65%), Query Frame = 1

Query:   49 RPTAGATTKGLKKTPVASDSSWNGPAVERRRKAQAIAAKKAAEKAA---EAGVFSPEQYEKFLDARATVPSGASN-YWQRIADKVPGQNAENCKKMASQLLFEKAAGTKKNFFGGYVETIEVKDYVDEDADVMGKL 444
            RP AG T KG KKT +  D +   PA +RR + +A A ++ + KA+     GVF+P Q+E F  AR  VPSG  + YW++IA +VPGQNA  CK++A  +LFE A GTK N+FGGY+ETIE  DYVD +AD+M K+
Sbjct:   69 RPMAGGTVKGGKKTKITQDVT---PA-QRRAQEKATAIRERSRKASTRKSEGVFTPPQFEAFKKARKEVPSGKGDAYWEKIAARVPGQNAAACKRVAESMLFEAAVGTKSNYFGGYIETIETPDYVDPEADIMFKI 200

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BLAST of jgi.p|Trimin1|354745 vs. uniprot
Match: W7TIQ4_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TIQ4_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 1.020e-19
Identity = 49/90 (54.44%), Postives = 58/90 (64.44%), Query Frame = 1

Query:  193 GVFSPEQYEKFLDARATVPSGASNYWQRIADKVPGQNAENCKKMASQLLFEKAAGTKKNFFGGYVETIEVKDYVDEDADVMGKLATCSAL 462
            G F+ EQ +    AR  VPS A++YWQ+IA KVPGQ AE CK M +QLL +KA GT KNFFGGYVE  E K  VD +A V  +L     L
Sbjct:  127 GYFTNEQLQALEVARREVPSSAASYWQKIASKVPGQTAETCKAMTNQLLLDKARGTGKNFFGGYVEVKETKMVVDTEATVGKRLKAAFGL 216

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BLAST of jgi.p|Trimin1|354745 vs. uniprot
Match: A0A7S2X777_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2X777_9EUKA)

HSP 1 Score: 67.4 bits (163), Expect = 2.280e-9
Identity = 39/83 (46.99%), Postives = 53/83 (63.86%), Query Frame = 1

Query:  196 VFSPEQYEKFLDARATVPSGASN-YWQRIADKV-PGQNAENCKKMASQLLFEKAAGTKKNFFGGYV----ETIEVKDYVDEDA 426
            VF+ +Q  +FL AR  +PSG+ + YWQ++AD+V  G  A  CK++A   LF+KAAGT  NFF  +V    E +E   YVDE A
Sbjct:   91 VFTDKQVARFLQARKELPSGSGDAYWQKVADRVGDGITAYECKRLAQNQLFKKAAGTSSNFFKNFVDVKGEYVE-SGYVDETA 172

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BLAST of jgi.p|Trimin1|354745 vs. uniprot
Match: A0A7S0CYG4_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0CYG4_9EUKA)

HSP 1 Score: 62.4 bits (150), Expect = 1.350e-7
Identity = 41/89 (46.07%), Postives = 51/89 (57.30%), Query Frame = 1

Query:  199 FSPEQYEKFLDARATVPSGASN-YWQRIADKV-PGQNAENCKKMASQLLFEKAAGTKKNFFGGYV----ETIEVKDYVDEDA-DVMGKL 444
            FS  Q  +FL AR  V SGA + YW  IA +V  G     CK++A   LF+KAAGT +NFF  YV    E +E   YVD DA D M ++
Sbjct:  102 FSDAQVSRFLQARKEVKSGAGDAYWDEIARRVGDGVTGYECKRLAQNQLFKKAAGTSQNFFKSYVDVKGEYVE-SGYVDADAPDAMSQM 189

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BLAST of jgi.p|Trimin1|354745 vs. uniprot
Match: A0A0G4FCV5_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4FCV5_VITBC)

HSP 1 Score: 57.0 bits (136), Expect = 5.350e-6
Identity = 26/48 (54.17%), Postives = 32/48 (66.67%), Query Frame = 1

Query:  232 ARATVPSGASNYWQRIADKVPGQNAENCKKMASQLLFEKAAGTKKNFF 375
            AR  VPSGA  YW +IA++VPG+ A  C+      LF +AAGT KNFF
Sbjct:  110 ARREVPSGAFLYWDQIAERVPGKTATQCEDYVRTQLFNRAAGTNKNFF 157

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|354745 vs. uniprot

BLAST of jgi.p|Trimin1|354745 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7


Match Name	E-value	Identity	Description
A0A835YSA5_9STRA	5.340e-117	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A835YZY5_9STRA	8.750e-92	100.00	Uncharacterized protein n=2 Tax=Tribonema minus Ta...	[more]
D8LSK3_ECTSI	3.380e-28	50.74	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]
W7TIQ4_9STRA	1.020e-19	54.44	Uncharacterized protein n=2 Tax=Monodopsidaceae Ta...	[more]
A0A7S2X777_9EUKA	2.280e-9	46.99	Hypothetical protein n=1 Tax=Lotharella oceanica T...	[more]
A0A7S0CYG4_9EUKA	1.350e-7	46.07	Hypothetical protein n=1 Tax=Amorphochlora amoebif...	[more]
A0A0G4FCV5_VITBC	5.350e-6	54.17	Uncharacterized protein n=1 Tax=Vitrella brassicaf...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_542	contig	Contig_542:7934..10850 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|354745\|estExt_Genemark1.C_Ctg_5420003
Max annot lvl	2759\|Eukaryota
EggNOG OGs	2D5NM@1\|root,2SZ3Q@2759\|Eukaryota
Evalue	1.41e-30
Seed ortholog	2880.D8LSK3
Hectar predicted targeting category	other localisation
TranscriptId	355067
Track	FilteredModels1
ProteinId	354745

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|354745	gene_19034	Tribonema minus UTEX_B_3156	gene	Contig_542 7934..10850 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|354745	Trimin1\|354745\|estExt_Genemark1.C_Ctg_5420003	Tribonema minus UTEX_B_3156	polypeptide	Contig_542 7934..10447 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_19034_1	exon_19034_1	Tribonema minus UTEX_B_3156	exon	Contig_542 7934..8009 +
exon_19034_2	exon_19034_2	Tribonema minus UTEX_B_3156	exon	Contig_542 8712..8904 +
exon_19034_3	exon_19034_3	Tribonema minus UTEX_B_3156	exon	Contig_542 9473..9629 +
exon_19034_4	exon_19034_4	Tribonema minus UTEX_B_3156	exon	Contig_542 10325..10850 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_19034	CDS_19034	Tribonema minus UTEX_B_3156	CDS	Contig_542 7934..8009 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR3_19034	UTR3_19034	Tribonema minus UTEX_B_3156	three_prime_UTR	Contig_542 10448..10850 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_542:7934..10850+
coding sequence from alignment at Contig_542:7934..10850+

spliced messenger RNA

>mRNA_19034 ID=mRNA_19034|Name=jgi.p|Trimin1|354745|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=952bp|location=Sequence derived from alignment at Contig_542:7934..10850+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGTTCAAGCTTGGACCCCCCAAGGCGACGTCTGCCGCCAGCTCTCG
CCCCACGGCTGGCGCAACGACCAAAGGCCTCAAGAAGACACCTGTCGCGT
CTGATTCATCATGGAACGGCCCTGCTGTGGAGCGGAGGAGAAAAGCGCAG
GCGATTGCGGCCAAGAAGGCGGCAGAGAAGGCTGCTGAGGCGGGGGTGTT
TTCCCCGGAACAGTACGAGAAGTTTCTTGATGCAAGGGCTACGGTGCCAT
CAGGAGCTTCCAACTACTGGCAGCGCATTGCGGACAAGGTGCCAGGACAG
AATGCCGAGAACTGCAAGAAGATGGCGAGCCAGCTGCTGTTTGAGAAGGC
AGCGGGCACAAAGAAAAACTTCTTCGGGGGGTATGTAGAGACCATCGAGG
TCAAAGATTACGTGGACGAGGATGCGGACGTGATGGGCAAGCTTGCCACA
TGTTCAGCTTTGGCAAGAAGTGATGTGCAACAAGCACATGCTCAATGTAT
CGTGACAACGCAATCTCCTGTTTCAAGGATGCATGTCAAGAGTTTGTGAA
CTTGAAGTACGCTCTGCTGGTACTGTGTTCAGCAGAAATGTTCAAGTGGG
CTGTTGCTAAACGCTTTTGCGACAGCCAGTGGTGTCACAACAGAGCCAGC
TAGTGGCATTCTGGTGGTCAGCTGTGGCAGGCTGTGCCGATCCACTGCAC
ATGGCGATGCGGCCATGATTGTATAGTCTCAAGGCGTTTTGCAGCAGTAC
TTCTGGCTTTACTACCATGGGATTATGGAACAGGGGCTACATGGTTTAGC
AGGAGCACAACGGTGGCATTTGCTTTTTGTTGGTATCAGCATCAGAGCAG
CTTCGATGCATGAGCTGTGGGCATAAGCGCAACGTGTTTGTGATGGACAT
TGCACCCAGATGTACAGAGTGTGCATCAATAATACTTGTTGTCAGGCGGC
GC

protein sequence of jgi.p|Trimin1|354745

>Trimin1|354745|estExt_Genemark1.C_Ctg_5420003 ID=Trimin1|354745|estExt_Genemark1.C_Ctg_5420003|Name=jgi.p|Trimin1|354745|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=183bp
MVFKLGPPKATSAASSRPTAGATTKGLKKTPVASDSSWNGPAVERRRKAQ
AIAAKKAAEKAAEAGVFSPEQYEKFLDARATVPSGASNYWQRIADKVPGQ
NAENCKKMASQLLFEKAAGTKKNFFGGYVETIEVKDYVDEDADVMGKLAT
CSALARSDVQQAHAQCIVTTQSPVSRMHVKSL*

mRNA from alignment at Contig_542:7934..10850+

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_19034 ID=mRNA_19034|Name=jgi.p|Trimin1|354745|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2917bp|location=Sequence derived from alignment at Contig_542:7934..10850+ (Tribonema minus UTEX_B_3156 )
ATGGTGTTCAAGCTTGGACCCCCCAAGGCGACGTCTGCCGCCAGCTCTCG
CCCCACGGCTGGCGCAACGACCAAAGGTGAGAGGCGTGTTCGACAATCGT
GTTCGGAATCAGTGAGACAGCTGTGAATGCATAACCACGGACTGCTTCGC
AAAGCACACGTTCGCCAGTCCCTGTGCAGTGACTGGCAATGTCGTAGACG
CCCTGCGTGCAAAAAAATTGACAGTGCTGTCATTGGGACCACAGCGTGCC
TGCGTTGCCTACAGCACTAAAAGAGCATTGCATTGCCATTGCTGTCATTT
AAAACAGTGCATCATGCCATGCAACTGGCAGCTTCCAGCTGTTGTAGGTC
ACTACCATTTCCATTTTCAGCAAAATGTCTTCTGTATCATCCTCGTACGT
CATGCTTGACCTCAGCAGGTTATGCGTTGCCGCCGCGCACTGCCGTTTTG
GGCGCTCTATTGACGCTGTCCAAGCCACTCGTGTCGCACCATCATCGTAC
AATCCTGCTGAGGACCTCCAAGCATGGCTTGACAGCTGATAAGAGCTGGC
GACTAGTCTACACATGACACGTTGGAAACTTTCAGTCGCCAATGGACGGT
CCTTCTTGTTTTTTGTAAAGACTTGGTCAACAAATATGAGGAAGTGGGCC
ATGAGGCAAAGGATGCAGAGACAGGCTCGCCTTGTACATCAGTAGCATCA
TTGCAGTGGCATTAACATGTGCGGCAATTACCATGCCTGATGCTAATCAA
CATGACTGCTGCGTGCACCATCCTCCAGGCCTCAAGAAGACACCTGTCGC
GTCTGATTCATCATGGAACGGCCCTGCTGTGGAGCGGAGGAGAAAAGCGC
AGGCGATTGCGGCCAAGAAGGCGGCAGAGAAGGCTGCTGAGGCGGGGGTG
TTTTCCCCGGAACAGTACGAGAAGTTTCTTGATGCAAGGGCTACGGTGCC
ATCAGGAGCTTCCAACTACTGGTGAGAGGGCTCTTTCGCATTTGGATGGA
GAGGCATGGCTAGCACACATGGAGGCTGCATGTTGCCGTAGGGAGCGGCA
CTTACATGTTGTTGTTTTCAGAGCAGCCCAGACTTGCAACTGCATCGCAA
ACTGTGCTCCAGCTATACCTGCTTGGTTGATTACAATGTCCTGTTATTCA
CCAGATTACTACCTCATTGAGGTGGCAACAGTAATGCAGGGCGCAGTCAT
CAGTCTAACAGCAGGTCATGCAGGTATAGCATGCAGAGCGGGCAGCTGGA
AATTGCCTAGTAGTGCAGGAAGATGTGAGTGGGCTGTTGTTACCACATGT
AGCGTCACAGGAGTAGAATCCATATCTGCTGATAGCGTCAGTTACTGGCA
CAGCTTGTGCCGAGGGCCAGTACGTGGAAAAGACAAGCATGCACATGCCA
TGTCAGCCGCGCATTCTATTTCTTGTTGGAGTTTCAGACAGGTCATGTAA
GCATTGTCTACACCGCTGCTCAAATGTCACATTGCCCTCAGCATTGTGTT
AGTCTCACTTCGTCTTCAACTGCTGTTTGGCCTCTGTAGGCAGCGCATTG
CGGACAAGGTGCCAGGACAGAATGCCGAGAACTGCAAGAAGATGGCGAGC
CAGCTGCTGTTTGAGAAGGCAGCGGGCACAAAGAAAAACTTCTTCGGGGG
GTATGTAGAGACCATCGAGGTCAAAGATTACGTGGACGAGGATGCGGTGA
GTGCTTTGGTCTGCAATCCTCTTTGCATTTCATTCATTGTTGCAAGGTCT
GATTTTTATTGTCAAGTTACATAGAGTGGCAGCAGAGGCACCTGCAGCGG
TTGAAGCAGTAGGAAGTCGTCATGCACTGTTGTTGGCGCTTCACTTCTGC
ACCGCAAAGTGAAGTATTTGCAAGTGCAGCAGTGTAGCGACATAGTCGGC
AGGGTACCTCACCTGCCACTTTTCCAGATTTAGATTTGTCAGTTGCGGAT
GCGGTTGCCCCAGGGGCCCGGAGAACCTGCTTGAAGGCATGCGTCAGAAG
TTTTTAGCTTGTGCATTTGAACCTAGAGTAGCTGAAAGATCAGCTCCAAT
CTACAGTCGCAAGATACCAGCAACGCAGCTGTCAGCGTTCGTGAAACAGC
TTTCATCTCTAATGAGGTGTACTGTCATGGCAGAACTGAAGACTCTCCCA
GGTCAAGCAGTTAGTGTACATGATACTGTGTCGCATGTGCTCCGATGTTG
TCAGGCACTCGTGCAGTTTCACCATATCCACACAGATTATGCGATAGTTT
CTTACATGACCACATGCATACATATAAAGTCACATTATGTACCTACATCA
TCACATGTACATTGAAATCCATCACATTATACATTTCGGTTGCTTTCCTC
TCATCCATTTCTACGTATGCGTCGTTTTTTGCATTGCGCAGGACGTGATG
GGCAAGCTTGCCACATGTTCAGCTTTGGCAAGAAGTGATGTGCAACAAGC
ACATGCTCAATGTATCGTGACAACGCAATCTCCTGTTTCAAGGATGCATG
TCAAGAGTTTGTGAACTTGAAGTACGCTCTGCTGGTACTGTGTTCAGCAG
AAATGTTCAAGTGGGCTGTTGCTAAACGCTTTTGCGACAGCCAGTGGTGT
CACAACAGAGCCAGCTAGTGGCATTCTGGTGGTCAGCTGTGGCAGGCTGT
GCCGATCCACTGCACATGGCGATGCGGCCATGATTGTATAGTCTCAAGGC
GTTTTGCAGCAGTACTTCTGGCTTTACTACCATGGGATTATGGAACAGGG
GCTACATGGTTTAGCAGGAGCACAACGGTGGCATTTGCTTTTTGTTGGTA
TCAGCATCAGAGCAGCTTCGATGCATGAGCTGTGGGCATAAGCGCAACGT
GTTTGTGATGGACATTGCACCCAGATGTACAGAGTGTGCATCAATAATAC
TTGTTGTCAGGCGGCGC

Coding sequence (CDS) from alignment at Contig_542:7934..10850+

>mRNA_19034 ID=mRNA_19034|Name=jgi.p|Trimin1|354745|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=549bp|location=Sequence derived from alignment at Contig_542:7934..10850+ (Tribonema minus UTEX_B_3156 )
ATGGTGTTCAAGCTTGGACCCCCCAAGGCGACGTCTGCCGCCAGCTCTCG
CCCCACGGCTGGCGCAACGACCAAAGGCCTCAAGAAGACACCTGTCGCGT
CTGATTCATCATGGAACGGCCCTGCTGTGGAGCGGAGGAGAAAAGCGCAG
GCGATTGCGGCCAAGAAGGCGGCAGAGAAGGCTGCTGAGGCGGGGGTGTT
TTCCCCGGAACAGTACGAGAAGTTTCTTGATGCAAGGGCTACGGTGCCAT
CAGGAGCTTCCAACTACTGGCAGCGCATTGCGGACAAGGTGCCAGGACAG
AATGCCGAGAACTGCAAGAAGATGGCGAGCCAGCTGCTGTTTGAGAAGGC
AGCGGGCACAAAGAAAAACTTCTTCGGGGGGTATGTAGAGACCATCGAGG
TCAAAGATTACGTGGACGAGGATGCGGACGTGATGGGCAAGCTTGCCACA
TGTTCAGCTTTGGCAAGAAGTGATGTGCAACAAGCACATGCTCAATGTAT
CGTGACAACGCAATCTCCTGTTTCAAGGATGCATGTCAAGAGTTTGTGA