mRNA_955 (mRNA) Tribonema minus UTEX_B_3156
|
Overview
Homology
BLAST of jgi.p|Trimin1|142835 vs. uniprot
Match: A0A835ZKV5_9STRA (P-loop containing nucleoside triphosphate hydrolase protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZKV5_9STRA) HSP 1 Score: 266 bits (680), Expect = 4.240e-90 Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 1
Query: 1 RRRSSIVETARVLSALVKQHVRTLAFCRTRKLTELVLKYCTEDLECSAPHLVEAVKGYRGGYTKGDRREIEGKLFSGKLLGVTATSALELGIDLGDLDVTIHLGYPGSVSSLWQQAGRAGRGGRNSLAILIMFDSPL 411
RRRSSIVETARVLSALVKQHVRTLAFCRTRKLTELVLKYCTEDLECSAPHLVEAVKGYRGGYTKGDRREIEGKLFSGKLLGVTATSALELGIDLGDLDVTIHLGYPGSVSSLWQQAGRAGRGGRNSLAILIMFDSPL
Sbjct: 1 RRRSSIVETARVLSALVKQHVRTLAFCRTRKLTELVLKYCTEDLECSAPHLVEAVKGYRGGYTKGDRREIEGKLFSGKLLGVTATSALELGIDLGDLDVTIHLGYPGSVSSLWQQAGRAGRGGRNSLAILIMFDSPL 137
BLAST of jgi.p|Trimin1|142835 vs. uniprot
Match: A0A6H5KP27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP27_9PHAE) HSP 1 Score: 196 bits (497), Expect = 2.400e-55 Identity = 98/137 (71.53%), Postives = 120/137 (87.59%), Query Frame = 1
Query: 1 RRRSSIVETARVLSALVKQHVRTLAFCRTRKLTELVLKYCTEDLECSAPHLVEAVKGYRGGYTKGDRREIEGKLFSGKLLGVTATSALELGIDLGDLDVTIHLGYPGSVSSLWQQAGRAGRGGRNSLAILIMFDSPL 411
RRRS I ETA++L+ALVKQ V+TLAFCRTRKLTEL L+Y +DLE +AP LV V+GYRGGYTK +RR+IEG LF+ KLLGVTAT ALELG+D+G+LDVT+HLG+PGSVSSL QQAGRAGRGG++SLAI+++F P+
Sbjct: 864 RRRSPICETAQILAALVKQRVKTLAFCRTRKLTELTLRYGHQDLEKTAPQLVPLVQGYRGGYTKDERRKIEGSLFANKLLGVTATCALELGVDIGELDVTLHLGFPGSVSSLRQQAGRAGRGGKDSLAIMVLFQDPI 1000
BLAST of jgi.p|Trimin1|142835 vs. uniprot
Match: A0A7R9UET8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UET8_9STRA) HSP 1 Score: 185 bits (470), Expect = 1.040e-54 Identity = 93/135 (68.89%), Postives = 112/135 (82.96%), Query Frame = 1
Query: 7 RSSIVETARVLSALVKQHVRTLAFCRTRKLTELVLKYCTEDLECSAPHLVEAVKGYRGGYTKGDRREIEGKLFSGKLLGVTATSALELGIDLGDLDVTIHLGYPGSVSSLWQQAGRAGRGGRNSLAILIMFDSPL 411
RS+IVETA V +AL+KQ VRTLAFCR RKL ELVL+Y +DL +AP L V+GYRGGY+K +RREIE +LF GKLLGVTA++ALELG+D+G LDVT+HLG+PGS+SSL QQ GRAGR G SLAI+I+F SPL
Sbjct: 165 RSAIVETAMVFTALIKQRVRTLAFCRVRKLVELVLRYSLQDLAATAPRLARRVRGYRGGYSKAERREIEAQLFGGKLLGVTASNALELGVDIGSLDVTVHLGFPGSISSLRQQMGRAGRTGGQSLAIIILFPSPL 299
BLAST of jgi.p|Trimin1|142835 vs. uniprot
Match: D8LLG5_ECTSI (DEAD/DEAH box helicase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLG5_ECTSI) HSP 1 Score: 192 bits (488), Expect = 3.000e-54 Identity = 96/137 (70.07%), Postives = 119/137 (86.86%), Query Frame = 1
Query: 1 RRRSSIVETARVLSALVKQHVRTLAFCRTRKLTELVLKYCTEDLECSAPHLVEAVKGYRGGYTKGDRREIEGKLFSGKLLGVTATSALELGIDLGDLDVTIHLGYPGSVSSLWQQAGRAGRGGRNSLAILIMFDSPL 411
RRRS I ETA++L+ALVKQ V+TLAFCRTRKLTEL L+Y +DL +AP +V V+GYRGGYTK +RR+IEG LF+ KLLGVTAT ALELG+D+G+LDVT+HLG+PGSVSSL QQAGRAGRGG++SLAI+++F P+
Sbjct: 484 RRRSPICETAQILAALVKQRVKTLAFCRTRKLTELTLRYGHQDLGKTAPQMVPLVQGYRGGYTKDERRKIEGSLFANKLLGVTATCALELGVDIGELDVTLHLGFPGSVSSLRQQAGRAGRGGKDSLAIMVLFQDPI 620
BLAST of jgi.p|Trimin1|142835 vs. uniprot
Match: A0A7S1UKF1_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UKF1_9STRA) HSP 1 Score: 182 bits (462), Expect = 3.820e-51 Identity = 90/137 (65.69%), Postives = 112/137 (81.75%), Query Frame = 1
Query: 1 RRRSSIVETARVLSALVKQHVRTLAFCRTRKLTELVLKYCTEDLECSAPHLVEAVKGYRGGYTKGDRREIEGKLFSGKLLGVTATSALELGIDLGDLDVTIHLGYPGSVSSLWQQAGRAGRGGRNSLAILIMFDSPL 411
R RS+IVETA + +AL+KQ VRTLAFCR RKL ELVL+Y +DL +AP L + V+GYRGGY+K DRREIE +LF G LLGVTA+SALELG+D+G LD T+HLG+PGS+S L QQ GRAGR GR S+A++++F SPL
Sbjct: 160 RPRSAIVETAMLFTALIKQRVRTLAFCRVRKLVELVLRYSLQDLAATAPRLAQRVRGYRGGYSKKDRREIERRLFGGDLLGVTASSALELGVDIGSLDATLHLGFPGSISGLRQQMGRAGRSGRPSMAVVVLFQSPL 296
BLAST of jgi.p|Trimin1|142835 vs. uniprot
Match: A0A7S2AHE3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AHE3_9STRA) HSP 1 Score: 167 bits (422), Expect = 2.030e-49 Identity = 82/121 (67.77%), Postives = 99/121 (81.82%), Query Frame = 1
Query: 49 VKQHVRTLAFCRTRKLTELVLKYCTEDLECSAPHLVEAVKGYRGGYTKGDRREIEGKLFSGKLLGVTATSALELGIDLGDLDVTIHLGYPGSVSSLWQQAGRAGRGGRNSLAILIMFDSPL 411
VK+ VRT+AF RTRKLTELVL+Y +DL +AP LV+ VK YRGGYTK DRR IE +LF G+LLGV AT ALELG+D+G LD T+H+G+P +SSLWQQAGRAGR GR SLA+++ FDSPL
Sbjct: 1 VKRRVRTIAFSRTRKLTELVLRYTLQDLTATAPGLVKFVKSYRGGYTKEDRRAIEAQLFQGQLLGVAATCALELGVDIGGLDATLHVGFPSPLSSLWQQAGRAGRSGRRSLAVVVAFDSPL 121
BLAST of jgi.p|Trimin1|142835 vs. uniprot
Match: F2TYE6_SALR5 (Uncharacterized protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2TYE6_SALR5) HSP 1 Score: 174 bits (441), Expect = 8.250e-48 Identity = 87/134 (64.93%), Postives = 110/134 (82.09%), Query Frame = 1
Query: 10 SSIVETARVLSALVKQHVRTLAFCRTRKLTELVLKYCTEDLECSAPHLVEAVKGYRGGYTKGDRREIEGKLFSGKLLGVTATSALELGIDLGDLDVTIHLGYPGSVSSLWQQAGRAGRGGRNSLAILIMFDSPL 411
S+I++ A +LSALVKQHVRTLAF + RK+TELVLKY DL+ +AP LV VK YR GYTK +RR IE LF+GK+LG TAT+ALELG+D+G LD TI LG+PGS++S+WQQAGR+GRG ++L ILI+F+SPL
Sbjct: 694 SAILQAALILSALVKQHVRTLAFAKVRKVTELVLKYTRHDLKHTAPQLVARVKSYRAGYTKEERRAIERALFAGKILGTTATNALELGVDIGSLDATILLGFPGSIASMWQQAGRSGRGTHDALTILILFNSPL 827
BLAST of jgi.p|Trimin1|142835 vs. uniprot
Match: A0A7C9DFS4_OPUST (Helicase C-terminal domain-containing protein (Fragment) n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9DFS4_OPUST) HSP 1 Score: 157 bits (397), Expect = 7.130e-47 Identity = 75/134 (55.97%), Postives = 104/134 (77.61%), Query Frame = 1
Query: 10 SSIVETARVLSALVKQHVRTLAFCRTRKLTELVLKYCTEDLECSAPHLVEAVKGYRGGYTKGDRREIEGKLFSGKLLGVTATSALELGIDLGDLDVTIHLGYPGSVSSLWQQAGRAGRGGRNSLAILIMFDSPL 411
S I+E + +L+ +V+ +R++AFC+TRKL ELVL Y E L+ + PHL++++ YR GY DRR IE + FSGKL G+ AT+ALELGID+G +DVT+HLG+PGSV+SLWQQAGR+GR G+ SLA+ + F+ PL
Sbjct: 4 SPILEVSLLLAEMVQHGLRSIAFCKTRKLCELVLSYTREILQDTTPHLMDSICAYRAGYVPEDRRRIESEFFSGKLCGIAATNALELGIDVGHIDVTLHLGFPGSVASLWQQAGRSGRRGKPSLAVYVAFEGPL 137
BLAST of jgi.p|Trimin1|142835 vs. uniprot
Match: A0A0J8CFE5_BETVV (Uncharacterized protein n=3 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=A0A0J8CFE5_BETVV) HSP 1 Score: 162 bits (410), Expect = 1.230e-43 Identity = 79/137 (57.66%), Postives = 107/137 (78.10%), Query Frame = 1
Query: 1 RRRSSIVETARVLSALVKQHVRTLAFCRTRKLTELVLKYCTEDLECSAPHLVEAVKGYRGGYTKGDRREIEGKLFSGKLLGVTATSALELGIDLGDLDVTIHLGYPGSVSSLWQQAGRAGRGGRNSLAILIMFDSPL 411
+R S I+E +R+L+ +V+ +R++AFC+TRKL ELVL Y E L+ +APHLV ++ YR GY DRR IE + FSGKL G+ ATSALELGID+G +DVT+HLG+PGS++SLWQQAGR+GR G+ SLA+ + F+ PL
Sbjct: 695 KRSSPILEVSRLLAEMVQHGLRSIAFCKTRKLCELVLSYTHEVLQDTAPHLVNSICAYRAGYIAEDRRRIESEFFSGKLRGIAATSALELGIDVGHVDVTLHLGFPGSIASLWQQAGRSGRRGKPSLAVYVAFEGPL 831
BLAST of jgi.p|Trimin1|142835 vs. uniprot
Match: UPI000B76DBD5 (uncharacterized protein LOC110722235 n=4 Tax=Chenopodium quinoa TaxID=63459 RepID=UPI000B76DBD5) HSP 1 Score: 161 bits (408), Expect = 2.290e-43 Identity = 77/137 (56.20%), Postives = 106/137 (77.37%), Query Frame = 1
Query: 1 RRRSSIVETARVLSALVKQHVRTLAFCRTRKLTELVLKYCTEDLECSAPHLVEAVKGYRGGYTKGDRREIEGKLFSGKLLGVTATSALELGIDLGDLDVTIHLGYPGSVSSLWQQAGRAGRGGRNSLAILIMFDSPL 411
+R S I+E +++ + +V+ +R +AFC+TRKL E+VL Y E L+ +APHL +++ YRGGY DRR IE + FSGKL G+ AT+ALELGID+G +DVT+HLG+PGS+SSLWQQAGR+GR G+ SLA+ + FD PL
Sbjct: 693 KRSSPILEVSQLFAEMVQHGLRCIAFCKTRKLCEVVLSYTHEILQDTAPHLTDSICAYRGGYVAEDRRRIESEFFSGKLCGIAATNALELGIDVGHIDVTLHLGFPGSISSLWQQAGRSGRRGKPSLAVYVAFDGPL 829 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|142835 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_955 ID=mRNA_955|Name=jgi.p|Trimin1|142835|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=411bp|location=Sequence derived from alignment at Contig_1:227518..229645+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. CGCCGGCGCAGCTCCATTGTGGAGACAGCGCGCGTGCTGAGCGCGCTGGTback to top protein sequence of jgi.p|Trimin1|142835 >Trimin1|142835|gw1.1.159.1 ID=Trimin1|142835|gw1.1.159.1|Name=jgi.p|Trimin1|142835|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=137bp RRRSSIVETARVLSALVKQHVRTLAFCRTRKLTELVLKYCTEDLECSAPHback to top mRNA from alignment at Contig_1:227518..229645+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_955 ID=mRNA_955|Name=jgi.p|Trimin1|142835|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2128bp|location=Sequence derived from alignment at Contig_1:227518..229645+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_1:227518..229645+ >mRNA_955 ID=mRNA_955|Name=jgi.p|Trimin1|142835|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=411bp|location=Sequence derived from alignment at Contig_1:227518..229645+ (Tribonema minus UTEX_B_3156 )back to top |