mRNA_7039 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|167977
Unique NamemRNA_7039
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|167977 vs. uniprot
Match: A0A836CBP0_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBP0_9STRA)

HSP 1 Score: 409 bits (1052), Expect = 5.890e-145
Identity = 194/194 (100.00%), Postives = 194/194 (100.00%), Query Frame = 1 
Query:    1 MQDAVCYTFRGAHEAPFVHSNAQFDTAYSNLPPVVVGPVRLTPTTTPFTCFWMKHVSRRTHGGMQCIPPPLPVPPDTYNTWCGLRAERLLGKYEYSQAKVDRMIFHNSVLVDHNADCLNFQLQWQAQIIQRPGVLSGVAIVTQGKQGCRKTVYVDEFFGALVVGRRFFSACNAKTAFGHFNAKQNGKVLVSLPE 582
            MQDAVCYTFRGAHEAPFVHSNAQFDTAYSNLPPVVVGPVRLTPTTTPFTCFWMKHVSRRTHGGMQCIPPPLPVPPDTYNTWCGLRAERLLGKYEYSQAKVDRMIFHNSVLVDHNADCLNFQLQWQAQIIQRPGVLSGVAIVTQGKQGCRKTVYVDEFFGALVVGRRFFSACNAKTAFGHFNAKQNGKVLVSLPE
Sbjct:    1 MQDAVCYTFRGAHEAPFVHSNAQFDTAYSNLPPVVVGPVRLTPTTTPFTCFWMKHVSRRTHGGMQCIPPPLPVPPDTYNTWCGLRAERLLGKYEYSQAKVDRMIFHNSVLVDHNADCLNFQLQWQAQIIQRPGVLSGVAIVTQGKQGCRKTVYVDEFFGALVVGRRFFSACNAKTAFGHFNAKQNGKVLVSLPE 194
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BLAST of jgi.p|Trimin1|167977 vs. uniprot
Match: A0A835Z0Z4_9STRA (DUF5906 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0Z4_9STRA)

HSP 1 Score: 167 bits (423), Expect = 1.240e-44
Identity = 84/182 (46.15%), Postives = 113/182 (62.09%), Query Frame = 1 
Query:   37 HEAPFVHSNAQFDTAYSNLPPVVVGPVRLTPTTTPFTCFWMKHVSRRTHGGMQCIPPPLPVPPDTYNTWCGLRAERLLGKYEYSQAKVDRMIFHNSVLVDHNADCLNFQLQWQAQIIQRPGVLSGVAIVTQGKQGCRKTVYVDEFFGALVVGRRFFSACNAKTAFGHFNAKQNGKVLVSLPE 582
            H  P  +  +     Y NLP V  G  +   +   F   W KH  RR H  +Q +PPPLPV  D +NTW G  AERL+G+Y YSQ  V+R+I HN VLVD++  CL +QL WQAQ+IQ+PG LS V I T G QGC K++Y+  F G  ++G + +S C+ KTAF HFN K + K+L+++ E
Sbjct:  418 HRRPNFYIRSTLSILYENLPEVECGKKQKDKS---FITAWCKHPERRLHHHIQMLPPPLPVADDIFNTWDGFAAERLVGRYPYSQDAVNRIIAHNKVLVDNDDKCLKYQLDWQAQLIQQPGALSRVCITTVGGQGCGKSLYIL-FLGTRIIGMKLYSDCSPKTAFDHFNYKVSDKLLITVQE 595
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BLAST of jgi.p|Trimin1|167977 vs. uniprot
Match: A0A8J9RR73_9CHLO (Probable helicase L207/L206 at N-terminal half n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9RR73_9CHLO)

HSP 1 Score: 79.0 bits (193), Expect = 1.190e-13
Identity = 49/150 (32.67%), Postives = 78/150 (52.00%), Query Frame = 1 
Query:  127 PTTTPFTCFWMKHVSRRTHGGMQCIPPPLPVPPDTYNTWCGLRAERLLGKYEYSQAKVDRMIFHNSVLVDHNADC-LNFQLQWQAQIIQRPGVLSGVAIVTQGKQGCRKTVYVDEFFGALVVGRRFFSACNAKTA--FGHFNAKQNGKVL 567
            PT T F   W+K  ++RT+  +  +PPPL  P D YNT+ GLRAE+L    E    ++  ++ H  +L     +    + L + A ++Q+PG L  V I+ Q KQG  K +  +E  G  ++G      C+A++   FG F+     K+L
Sbjct:  682 PTKTAFFDVWLKDATKRTYERVDMLPPPLECPSDVYNTYRGLRAEKLPALREARSVQI--VLDHILMLAGDTGEAGREYLLNYMAHMVQKPGELPKVGILMQSKQGVGKNLLFEELLGKKILGAGLMH-CSAQSEDYFGRFDNAAVNKLL 828
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|167977 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A836CBP0_9STRA5.890e-145100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835Z0Z4_9STRA1.240e-4446.15DUF5906 domain-containing protein n=1 Tax=Tribonem... [more]
A0A8J9RR73_9CHLO1.190e-1332.67Probable helicase L207/L206 at N-terminal half n=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_54contigContig_54:263777..264358 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|167977|e_gw1.54.98.1
BRITEko00000
KEGG koko:K06919
DescriptionPsort location Cytoplasmic, score
COG categoryL
Max annot lvl1236|Gammaproteobacteria
EggNOG OGsCOG3378@1|root,COG3378@2|Bacteria,1QVIS@1224|Proteobacteria,1S02S@1236|Gammaproteobacteria
Evalue1.12e-08
Seed ortholog566466.NOR53_3203
Hectar predicted targeting categoryother localisation
TranscriptId168299
TrackFilteredModels1
ProteinId167977
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|167977gene_7039Tribonema minus UTEX_B_3156 geneContig_54 263777..264358 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_7039_1exon_7039_1Tribonema minus UTEX_B_3156 exonContig_54 263777..264358 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_7039CDS_7039Tribonema minus UTEX_B_3156 CDSContig_54 263777..264358 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|167977Trimin1|167977|e_gw1.54.98.1Tribonema minus UTEX_B_3156 polypeptideContig_54 263777..264358 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_7039 ID=mRNA_7039|Name=jgi.p|Trimin1|167977|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=582bp|location=Sequence derived from alignment at Contig_54:263777..264358- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGGATGCCGTGTGCTACACCTTCAGAGGCGCGCACGAGGCGCCTTT
CGTGCACAGCAATGCGCAATTCGACACCGCGTACAGCAACCTTCCGCCCG
TCGTAGTAGGCCCCGTGAGATTGACGCCGACGACGACGCCTTTCACCTGC
TTCTGGATGAAGCACGTGTCCCGTCGCACTCACGGCGGCATGCAGTGCAT
CCCTCCGCCGCTGCCCGTGCCGCCAGACACGTACAACACGTGGTGCGGCT
TGCGAGCGGAACGGCTGCTGGGCAAGTACGAGTACAGTCAGGCGAAGGTG
GACAGGATGATCTTCCACAACTCCGTGCTCGTCGACCACAACGCCGACTG
CCTGAACTTTCAGCTTCAGTGGCAGGCGCAGATCATCCAGCGACCGGGGG
TTTTGAGTGGAGTGGCCATCGTGACGCAGGGAAAGCAAGGCTGCAGGAAG
ACGGTGTACGTCGATGAGTTCTTCGGCGCTCTCGTAGTCGGCAGGCGGTT
CTTCAGCGCCTGCAACGCCAAGACCGCGTTCGGTCACTTCAACGCCAAGC
AGAACGGAAAGGTGCTGGTGTCCTTGCCCGAG
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protein sequence of jgi.p|Trimin1|167977

>Trimin1|167977|e_gw1.54.98.1 ID=Trimin1|167977|e_gw1.54.98.1|Name=jgi.p|Trimin1|167977|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=194bp
MQDAVCYTFRGAHEAPFVHSNAQFDTAYSNLPPVVVGPVRLTPTTTPFTC
FWMKHVSRRTHGGMQCIPPPLPVPPDTYNTWCGLRAERLLGKYEYSQAKV
DRMIFHNSVLVDHNADCLNFQLQWQAQIIQRPGVLSGVAIVTQGKQGCRK
TVYVDEFFGALVVGRRFFSACNAKTAFGHFNAKQNGKVLVSLPE
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mRNA from alignment at Contig_54:263777..264358-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7039 ID=mRNA_7039|Name=jgi.p|Trimin1|167977|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=582bp|location=Sequence derived from alignment at Contig_54:263777..264358- (Tribonema minus UTEX_B_3156 )
ATGCAGGATGCCGTGTGCTACACCTTCAGAGGCGCGCACGAGGCGCCTTT
CGTGCACAGCAATGCGCAATTCGACACCGCGTACAGCAACCTTCCGCCCG
TCGTAGTAGGCCCCGTGAGATTGACGCCGACGACGACGCCTTTCACCTGC
TTCTGGATGAAGCACGTGTCCCGTCGCACTCACGGCGGCATGCAGTGCAT
CCCTCCGCCGCTGCCCGTGCCGCCAGACACGTACAACACGTGGTGCGGCT
TGCGAGCGGAACGGCTGCTGGGCAAGTACGAGTACAGTCAGGCGAAGGTG
GACAGGATGATCTTCCACAACTCCGTGCTCGTCGACCACAACGCCGACTG
CCTGAACTTTCAGCTTCAGTGGCAGGCGCAGATCATCCAGCGACCGGGGG
TTTTGAGTGGAGTGGCCATCGTGACGCAGGGAAAGCAAGGCTGCAGGAAG
ACGGTGTACGTCGATGAGTTCTTCGGCGCTCTCGTAGTCGGCAGGCGGTT
CTTCAGCGCCTGCAACGCCAAGACCGCGTTCGGTCACTTCAACGCCAAGC
AGAACGGAAAGGTGCTGGTGTCCTTGCCCGAG
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Coding sequence (CDS) from alignment at Contig_54:263777..264358-

>mRNA_7039 ID=mRNA_7039|Name=jgi.p|Trimin1|167977|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=582bp|location=Sequence derived from alignment at Contig_54:263777..264358- (Tribonema minus UTEX_B_3156 )
ATGCAGGATGCCGTGTGCTACACCTTCAGAGGCGCGCACGAGGCGCCTTT
CGTGCACAGCAATGCGCAATTCGACACCGCGTACAGCAACCTTCCGCCCG
TCGTAGTAGGCCCCGTGAGATTGACGCCGACGACGACGCCTTTCACCTGC
TTCTGGATGAAGCACGTGTCCCGTCGCACTCACGGCGGCATGCAGTGCAT
CCCTCCGCCGCTGCCCGTGCCGCCAGACACGTACAACACGTGGTGCGGCT
TGCGAGCGGAACGGCTGCTGGGCAAGTACGAGTACAGTCAGGCGAAGGTG
GACAGGATGATCTTCCACAACTCCGTGCTCGTCGACCACAACGCCGACTG
CCTGAACTTTCAGCTTCAGTGGCAGGCGCAGATCATCCAGCGACCGGGGG
TTTTGAGTGGAGTGGCCATCGTGACGCAGGGAAAGCAAGGCTGCAGGAAG
ACGGTGTACGTCGATGAGTTCTTCGGCGCTCTCGTAGTCGGCAGGCGGTT
CTTCAGCGCCTGCAACGCCAAGACCGCGTTCGGTCACTTCAACGCCAAGC
AGAACGGAAAGGTGCTGGTGTCCTTGCCCGAG
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