Trimin1|167925|e_gw1.54.209.1 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|167925
Unique NameTrimin1|167925|e_gw1.54.209.1
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length52
Homology
BLAST of jgi.p|Trimin1|167925 vs. uniprot
Match: A0A836CBQ6_9STRA (Ribosomal_S10 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBQ6_9STRA)

HSP 1 Score: 107 bits (268), Expect = 6.680e-30
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0
Query:    1 MSKLLDEACKKILSVISATESPENIKGPIPLPTRKRIYCVLRSPHVDNYNI 51
            MSKLLDEACKKILSVISATESPENIKGPIPLPTRKRIYCVLRSPHVDNYNI
Sbjct:    1 MSKLLDEACKKILSVISATESPENIKGPIPLPTRKRIYCVLRSPHVDNYNI 51          
BLAST of jgi.p|Trimin1|167925 vs. uniprot
Match: B7T1V6_VAULI (30S ribosomal protein S10, chloroplastic n=1 Tax=Vaucheria litorea TaxID=109269 RepID=B7T1V6_VAULI)

HSP 1 Score: 81.3 bits (199), Expect = 1.100e-18
Identity = 37/46 (80.43%), Postives = 41/46 (89.13%), Query Frame = 0
Query:    2 SKLLDEACKKILSVISATESPENIKGPIPLPTRKRIYCVLRSPHVD 47
            SK+L+EACKKI S+IS   + ENIKGPIPLPTRKRIYCVLRSPHVD
Sbjct:   16 SKILEEACKKIFSIISPIINSENIKGPIPLPTRKRIYCVLRSPHVD 61          
BLAST of jgi.p|Trimin1|167925 vs. uniprot
Match: M1KFS2_DIALT (30S ribosomal protein S10, chloroplastic n=2 Tax=Pavlovaceae TaxID=418969 RepID=M1KFS2_DIALT)

HSP 1 Score: 62.8 bits (151), Expect = 1.610e-11
Identity = 25/45 (55.56%), Postives = 38/45 (84.44%), Query Frame = 0
Query:    3 KLLDEACKKILSVISATESPENIKGPIPLPTRKRIYCVLRSPHVD 47
            +L+++ C KI S+++ T +  N+KGP+PLPTR++IYCVLRSPHV+
Sbjct:   13 RLMNQVCDKICSIVTLTNA--NLKGPVPLPTRRKIYCVLRSPHVN 55          
BLAST of jgi.p|Trimin1|167925 vs. uniprot
Match: A0A516ZAG4_9STRA (30S ribosomal protein S10, chloroplastic n=1 Tax=Pseudopedinella elastica TaxID=35684 RepID=A0A516ZAG4_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 1.770e-11
Identity = 27/45 (60.00%), Postives = 37/45 (82.22%), Query Frame = 0
Query:    3 KLLDEACKKILSVISATESPENIKGPIPLPTRKRIYCVLRSPHVD 47
            KLLD AC++I++ +  T+S   + GPIPLPT+KR+YCVLRSPHV+
Sbjct:   19 KLLDNACQQIINEVEKTQS--KVVGPIPLPTKKRVYCVLRSPHVN 61          
BLAST of jgi.p|Trimin1|167925 vs. uniprot
Match: A0A516ZA04_9STRA (30S ribosomal protein S10, chloroplastic n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A516ZA04_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 3.560e-11
Identity = 28/45 (62.22%), Postives = 38/45 (84.44%), Query Frame = 0
Query:    3 KLLDEACKKILSVISATESPENIKGPIPLPTRKRIYCVLRSPHVD 47
            KLLD +CK+I+  I+AT++   + GPIPLPT++RIYCVLRSPHV+
Sbjct:   19 KLLDLSCKQIIESINATQA--KVVGPIPLPTKQRIYCVLRSPHVN 61          
BLAST of jgi.p|Trimin1|167925 vs. uniprot
Match: A0A2I4Q2K6_9PHAE (30S ribosomal protein S10, chloroplastic n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2K6_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 1.510e-10
Identity = 27/45 (60.00%), Postives = 34/45 (75.56%), Query Frame = 0
Query:    3 KLLDEACKKILSVISATESPENIKGPIPLPTRKRIYCVLRSPHVD 47
            K+L+E+C KI+++IS  E P    GPI LPT KR YCVLRSPHV+
Sbjct:   16 KILNESCNKIINLISQEELPIKFWGPISLPTTKRSYCVLRSPHVN 60          
BLAST of jgi.p|Trimin1|167925 vs. uniprot
Match: A0A1C9C7V5_RHOPU (Ribosomal protein S10 n=1 Tax=Rhodymenia pseudopalmata TaxID=31502 RepID=A0A1C9C7V5_RHOPU)

HSP 1 Score: 60.1 bits (144), Expect = 1.990e-10
Identity = 27/46 (58.70%), Postives = 34/46 (73.91%), Query Frame = 0
Query:    2 SKLLDEACKKILSVISATESPENIKGPIPLPTRKRIYCVLRSPHVD 47
            SKLL E+C  I   +S T+    + GP+PLPT++RIYCVLRSPHVD
Sbjct:   16 SKLLAESCNNIRKTVSRTDV--KVVGPVPLPTKRRIYCVLRSPHVD 59          
BLAST of jgi.p|Trimin1|167925 vs. uniprot
Match: A0A4D6X1C1_9FLOR (Ribosomal protein S10 n=1 Tax=Ptilothamnion sphaericum TaxID=1498216 RepID=A0A4D6X1C1_9FLOR)

HSP 1 Score: 60.1 bits (144), Expect = 2.040e-10
Identity = 27/44 (61.36%), Postives = 34/44 (77.27%), Query Frame = 0
Query:    4 LLDEACKKILSVISATESPENIKGPIPLPTRKRIYCVLRSPHVD 47
            LL E+C +I+  I  TES   + GPIPLPT+++IYCVLRSPHVD
Sbjct:   19 LLKESCNRIIEAIKRTES--KLIGPIPLPTKRKIYCVLRSPHVD 60          
BLAST of jgi.p|Trimin1|167925 vs. uniprot
Match: A0A1C9CFP4_9FLOR (Ribosomal protein S10 n=1 Tax=Hildenbrandia rivularis TaxID=135206 RepID=A0A1C9CFP4_9FLOR)

HSP 1 Score: 60.1 bits (144), Expect = 2.040e-10
Identity = 25/45 (55.56%), Postives = 37/45 (82.22%), Query Frame = 0
Query:    3 KLLDEACKKILSVISATESPENIKGPIPLPTRKRIYCVLRSPHVD 47
            +LL+++C+KI+   + T+S   + GPIPLPT++R+YCVLRSPHVD
Sbjct:   18 QLLNQSCQKIVDTANTTQS--KVIGPIPLPTKRRVYCVLRSPHVD 60          
BLAST of jgi.p|Trimin1|167925 vs. uniprot
Match: A0A8F0FC51_9PHAE (Ribosomal protein S10 n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FC51_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 2.130e-10
Identity = 26/44 (59.09%), Postives = 33/44 (75.00%), Query Frame = 0
Query:    4 LLDEACKKILSVISATESPENIKGPIPLPTRKRIYCVLRSPHVD 47
            +L EACK IL V++  ES + I GP+  PT+KR YCVLRSPHV+
Sbjct:   17 ILKEACKNILDVLANEESIDKIAGPVSFPTKKRSYCVLRSPHVN 60          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|167925 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CBQ6_9STRA6.680e-30100.00Ribosomal_S10 domain-containing protein n=1 Tax=Tr... [more]
B7T1V6_VAULI1.100e-1880.4330S ribosomal protein S10, chloroplastic n=1 Tax=V... [more]
M1KFS2_DIALT1.610e-1155.5630S ribosomal protein S10, chloroplastic n=2 Tax=P... [more]
A0A516ZAG4_9STRA1.770e-1160.0030S ribosomal protein S10, chloroplastic n=1 Tax=P... [more]
A0A516ZA04_9STRA3.560e-1162.2230S ribosomal protein S10, chloroplastic n=1 Tax=F... [more]
A0A2I4Q2K6_9PHAE1.510e-1060.0030S ribosomal protein S10, chloroplastic n=1 Tax=D... [more]
A0A1C9C7V5_RHOPU1.990e-1058.70Ribosomal protein S10 n=1 Tax=Rhodymenia pseudopal... [more]
A0A4D6X1C1_9FLOR2.040e-1061.36Ribosomal protein S10 n=1 Tax=Ptilothamnion sphaer... [more]
A0A1C9CFP4_9FLOR2.040e-1055.56Ribosomal protein S10 n=1 Tax=Hildenbrandia rivula... [more]
A0A8F0FC51_9PHAE2.130e-1059.09Ribosomal protein S10 n=1 Tax=Desmarestia aculeata... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036838Ribosomal protein S10 domain superfamilyGENE3D3.30.70.600Ribosomal protein S10 domaincoord: 1..50
e-value: 1.2E-11
score: 46.6
IPR036838Ribosomal protein S10 domain superfamilySUPERFAMILY54999Ribosomal protein S10coord: 3..48
IPR027486Ribosomal protein S10 domainPFAMPF00338Ribosomal_S10coord: 2..47
e-value: 8.6E-11
score: 41.9

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_54contigContig_54:627240..627395 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|167925mRNA_7092Tribonema minus UTEX_B_3156 mRNAContig_54 627240..627395 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|167925|e_gw1.54.209.1 ID=Trimin1|167925|e_gw1.54.209.1|Name=jgi.p|Trimin1|167925|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=52bp
MSKLLDEACKKILSVISATESPENIKGPIPLPTRKRIYCVLRSPHVDNYN
I*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036838Ribosomal_S10_dom_sf
IPR027486Ribosomal_S10_dom