mRNA_7045 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|167920
Unique NamemRNA_7045
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|167920 vs. uniprot
Match: A0A836CBA2_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBA2_9STRA)

HSP 1 Score: 175 bits (443), Expect = 7.400e-53
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 1 
Query:    1 MNIDPSNLELQRGGIINLVEMCEHGGAAELLDAGVLPAVMAPMNAHVGDALLQTLGICIITSLLQANVVPAEHFITXXXXXXXXXXXXXXXXXXXXXXXXXICIGDLWSDVTEDRL 348
            MNIDPSNLELQRGGIINLVEMCEHGGAAELLDAGVLPAVMAPMNAHVGDALLQTLGICIITSLLQANVVPAEHFITXXXXXXXXXXXXXXXXXXXXXXXXXICIGDLWSDVTEDRL
Sbjct:    1 MNIDPSNLELQRGGIINLVEMCEHGGAAELLDAGVLPAVMAPMNAHVGDALLQTLGICIITSLLQANVVPAEHFITXXXXXXXXXXXXXXXXXXXXXXXXXICIGDLWSDVTEDRL 116
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BLAST of jgi.p|Trimin1|167920 vs. uniprot
Match: A0A836CC48_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC48_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 1.140e-15
Identity = 74/105 (70.48%), Postives = 83/105 (79.05%), Query Frame = 1 
Query:   34 RGGIINLVEMCEHGGAAELLDAGVLPAVMAPMNAHVGDALLQTLGICIITSLLQANVVPAEHFITXXXXXXXXXXXXXXXXXXXXXXXXXICIGDLWSDVTEDRL 348
            RG I+ L  +C  G A ELL+AGV+PAVMA MNAHVG A+LQ  GI IIT LLQAN+ P      XXXXXXXXXXXXXXXXXXXXXXXXX+CIG+L+SD TEDRL
Sbjct:    1 RGCIMELTILCNEG-AEELLNAGVIPAVMAAMNAHVGKAVLQRFGIIIITKLLQANI-PXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVCIGELFSDATEDRL 103
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|167920 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A836CBA2_9STRA7.400e-53100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A836CC48_9STRA1.140e-1570.48Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_54contigContig_54:286907..287428 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|167920|e_gw1.54.151.1
Hectar predicted targeting categoryother localisation
TranscriptId168242
TrackFilteredModels1
ProteinId167920
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|167920gene_7045Tribonema minus UTEX_B_3156 geneContig_54 286907..287428 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_7045_1exon_7045_1Tribonema minus UTEX_B_3156 exonContig_54 286907..287428 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_7045CDS_7045Tribonema minus UTEX_B_3156 CDSContig_54 286907..287428 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|167920Trimin1|167920|e_gw1.54.151.1Tribonema minus UTEX_B_3156 polypeptideContig_54 286907..287428 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_7045 ID=mRNA_7045|Name=jgi.p|Trimin1|167920|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=522bp|location=Sequence derived from alignment at Contig_54:286907..287428+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGAACATTGACCCCAGCAACCTAGAACTCCAGCGAGGCGGAATCATAAA
TTTAGTCGAAATGTGCGAACATGGGGGGGCGGCGGAGCTGCTTGATGCCG
GTGTGCTGCCCGCCGTCATGGCGCCCATGAACGCTCACGTCGGCGACGCA
TTGCTGCAGACGTTGGGCATCTGCATCATCACAAGCCTGCTGCAGGCGAA
TGTTGTGCCGGCTGAGCACTTCATCACCGCCGGCGTGCACCGCTCCGTTG
TAGCGGCCATGGACACCAACATAGGCGACAGCCAACTGCAGCGCACAGGC
GTAATTTGCATAGGAGATCTGTGGAGCGACGTGACGGAAGATCGGCTGAT
CGATGCTGGTGCACTCCGTGCATTCATTGCGGCTATGGACAGGCGGGTCG
GTCACACCGGCGTGCAGTGGGAGTGTCTCATCAACCTTGCAAAAGTATGG
ACAGACGGCACAGCGGAGCGCTTAATTAATGACGGCATGCACCGCGCCGT
CCTCGCGAGTATGCGCATCCAC
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protein sequence of jgi.p|Trimin1|167920

>Trimin1|167920|e_gw1.54.151.1 ID=Trimin1|167920|e_gw1.54.151.1|Name=jgi.p|Trimin1|167920|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=174bp
MNIDPSNLELQRGGIINLVEMCEHGGAAELLDAGVLPAVMAPMNAHVGDA
LLQTLGICIITSLLQANVVPAEHFITAGVHRSVVAAMDTNIGDSQLQRTG
VICIGDLWSDVTEDRLIDAGALRAFIAAMDRRVGHTGVQWECLINLAKVW
TDGTAERLINDGMHRAVLASMRIH
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mRNA from alignment at Contig_54:286907..287428+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7045 ID=mRNA_7045|Name=jgi.p|Trimin1|167920|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=522bp|location=Sequence derived from alignment at Contig_54:286907..287428+ (Tribonema minus UTEX_B_3156 )
ATGAACATTGACCCCAGCAACCTAGAACTCCAGCGAGGCGGAATCATAAA
TTTAGTCGAAATGTGCGAACATGGGGGGGCGGCGGAGCTGCTTGATGCCG
GTGTGCTGCCCGCCGTCATGGCGCCCATGAACGCTCACGTCGGCGACGCA
TTGCTGCAGACGTTGGGCATCTGCATCATCACAAGCCTGCTGCAGGCGAA
TGTTGTGCCGGCTGAGCACTTCATCACCGCCGGCGTGCACCGCTCCGTTG
TAGCGGCCATGGACACCAACATAGGCGACAGCCAACTGCAGCGCACAGGC
GTAATTTGCATAGGAGATCTGTGGAGCGACGTGACGGAAGATCGGCTGAT
CGATGCTGGTGCACTCCGTGCATTCATTGCGGCTATGGACAGGCGGGTCG
GTCACACCGGCGTGCAGTGGGAGTGTCTCATCAACCTTGCAAAAGTATGG
ACAGACGGCACAGCGGAGCGCTTAATTAATGACGGCATGCACCGCGCCGT
CCTCGCGAGTATGCGCATCCAC
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Coding sequence (CDS) from alignment at Contig_54:286907..287428+

>mRNA_7045 ID=mRNA_7045|Name=jgi.p|Trimin1|167920|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=522bp|location=Sequence derived from alignment at Contig_54:286907..287428+ (Tribonema minus UTEX_B_3156 )
ATGAACATTGACCCCAGCAACCTAGAACTCCAGCGAGGCGGAATCATAAA
TTTAGTCGAAATGTGCGAACATGGGGGGGCGGCGGAGCTGCTTGATGCCG
GTGTGCTGCCCGCCGTCATGGCGCCCATGAACGCTCACGTCGGCGACGCA
TTGCTGCAGACGTTGGGCATCTGCATCATCACAAGCCTGCTGCAGGCGAA
TGTTGTGCCGGCTGAGCACTTCATCACCGCCGGCGTGCACCGCTCCGTTG
TAGCGGCCATGGACACCAACATAGGCGACAGCCAACTGCAGCGCACAGGC
GTAATTTGCATAGGAGATCTGTGGAGCGACGTGACGGAAGATCGGCTGAT
CGATGCTGGTGCACTCCGTGCATTCATTGCGGCTATGGACAGGCGGGTCG
GTCACACCGGCGTGCAGTGGGAGTGTCTCATCAACCTTGCAAAAGTATGG
ACAGACGGCACAGCGGAGCGCTTAATTAATGACGGCATGCACCGCGCCGT
CCTCGCGAGTATGCGCATCCAC
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