mRNA_7049 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|167894
Unique NamemRNA_7049
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|167894 vs. uniprot
Match: A0A835YPS7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPS7_9STRA)

HSP 1 Score: 168 bits (426), Expect = 2.170e-46
Identity = 319/319 (100.00%), Postives = 319/319 (100.00%), Query Frame = 1 
Query:    1 MPQYPSALHTLHISMCPTLTELPESIGELAALETLCLLGCGLXXXXXXXXXXXXXXXXALEDCMALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSVGGKGXXXXXXXXXXXXXXXXXGFYGLQRRIALPNSIRFGQLAALEEFFVRGCGGLDALPYSIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHINIAGTRCTSFSVHGCLVVCQ 957
            MPQYPSALHTLHISMCPTLTELPESIGELAALETLCLLGCGLXXXXXXXXXXXXXXXXALEDCMALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSVGGKGXXXXXXXXXXXXXXXXXGFYGLQRRIALPNSIRFGQLAALEEFFVRGCGGLDALPYSIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHINIAGTRCTSFSVHGCLVVCQ
Sbjct:    1 MPQYPSALHTLHISMCPTLTELPESIGELAALETLCLLGCGLXXXXXXXXXXXXXXXXALEDCMALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSVGGKGXXXXXXXXXXXXXXXXXGFYGLQRRIALPNSIRFGQLAALEEFFVRGCGGLDALPYSIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHINIAGTRCTSFSVHGCLVVCQ 319
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|167894 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YPS7_9STRA2.170e-46100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_54contigContig_54:299701..300660 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|167894|e_gw1.54.102.1
Hectar predicted targeting categoryother localisation
TranscriptId168216
TrackFilteredModels1
ProteinId167894
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|167894gene_7049Tribonema minus UTEX_B_3156 geneContig_54 299701..300660 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_7049_1exon_7049_1Tribonema minus UTEX_B_3156 exonContig_54 299701..300660 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_7049CDS_7049Tribonema minus UTEX_B_3156 CDSContig_54 299701..300660 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|167894Trimin1|167894|e_gw1.54.102.1Tribonema minus UTEX_B_3156 polypeptideContig_54 299701..300660 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_7049 ID=mRNA_7049|Name=jgi.p|Trimin1|167894|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=960bp|location=Sequence derived from alignment at Contig_54:299701..300660+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCCACAATACCCTTCGGCGCTGCATACACTCCACATCTCCATGTGCCC
GACCCTCACCGAGCTGCCGGAAAGCATTGGCGAGCTGGCGGCGTTGGAGA
CGCTGTGTCTCCTAGGTTGCGGGCTGACCGCACTGCCGGACAGCATCGGC
CAGCTGACGGCGCTCCGGAGGCTCGCACTCGAGGACTGCATGGCCCTCAC
CGCGCTGCCGGACAGCATTGGCCAGCTGACGGCGCTCCAGACGCTCACAA
TCGACGGGTGCACGGCCCTCACCGCGCTGCCGGACAGCATCTGCGAGCTG
GCGGCTTTAACGGAGCTTACTATCGATGCGTGCTGGGGACTCACTGCGCT
GCCGGACGGCATCCACCAGCTGGCGGCGTTGAAGTCGCTTTCTGTGGGGG
GCAAGGGGCTGACCGTGCTGCCGGACAGCATTGGCCAGCTGGCGGCCTTG
GAGACGCTTGGTTTCTATGGGCTCCAGCGCCGCATTGCGCTGCCGAACAG
CATCCGATTCGGCCAGCTGGCGGCACTGGAGGAGTTTTTTGTCCGTGGGT
GCGGGGGCCTCGATGCGCTGCCGTACAGCATCGGCCAGCTGACGGCGTTA
AAGACACTAGACATCATGAATTGCAGACGTCTGACCGAGCTGCCGGACAG
CATTTGCCAGCTGACGGCATTGGAGACGCTGATTGTCTGCGGGTGCCAGG
GCCTCACTGCGCTGCCGGACAGCATCGGCCAGCTGGCAGCACTGCGGAAC
CTTGTAGTAAGGAAATGCGAAGCCCTCACTGCGCTGCCGGAGAGCATCGG
CCAGCTGGCAGCGCTGCGGAAGCTCGAAGTAAGGAACTGCGACGCCCTCA
CTGCGCTGCCTGCCAGCATAGGTCAGCTGCCCGCGCTGCAGCACATCAAT
ATCGCAGGCACCCGCTGCACCAGTTTCAGCGTGCATGGTTGCCTAGTTGT
TTGCCAGTAG
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protein sequence of jgi.p|Trimin1|167894

>Trimin1|167894|e_gw1.54.102.1 ID=Trimin1|167894|e_gw1.54.102.1|Name=jgi.p|Trimin1|167894|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=320bp
MPQYPSALHTLHISMCPTLTELPESIGELAALETLCLLGCGLTALPDSIG
QLTALRRLALEDCMALTALPDSIGQLTALQTLTIDGCTALTALPDSICEL
AALTELTIDACWGLTALPDGIHQLAALKSLSVGGKGLTVLPDSIGQLAAL
ETLGFYGLQRRIALPNSIRFGQLAALEEFFVRGCGGLDALPYSIGQLTAL
KTLDIMNCRRLTELPDSICQLTALETLIVCGCQGLTALPDSIGQLAALRN
LVVRKCEALTALPESIGQLAALRKLEVRNCDALTALPASIGQLPALQHIN
IAGTRCTSFSVHGCLVVCQ*
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mRNA from alignment at Contig_54:299701..300660+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7049 ID=mRNA_7049|Name=jgi.p|Trimin1|167894|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=960bp|location=Sequence derived from alignment at Contig_54:299701..300660+ (Tribonema minus UTEX_B_3156 )
ATGCCACAATACCCTTCGGCGCTGCATACACTCCACATCTCCATGTGCCC
GACCCTCACCGAGCTGCCGGAAAGCATTGGCGAGCTGGCGGCGTTGGAGA
CGCTGTGTCTCCTAGGTTGCGGGCTGACCGCACTGCCGGACAGCATCGGC
CAGCTGACGGCGCTCCGGAGGCTCGCACTCGAGGACTGCATGGCCCTCAC
CGCGCTGCCGGACAGCATTGGCCAGCTGACGGCGCTCCAGACGCTCACAA
TCGACGGGTGCACGGCCCTCACCGCGCTGCCGGACAGCATCTGCGAGCTG
GCGGCTTTAACGGAGCTTACTATCGATGCGTGCTGGGGACTCACTGCGCT
GCCGGACGGCATCCACCAGCTGGCGGCGTTGAAGTCGCTTTCTGTGGGGG
GCAAGGGGCTGACCGTGCTGCCGGACAGCATTGGCCAGCTGGCGGCCTTG
GAGACGCTTGGTTTCTATGGGCTCCAGCGCCGCATTGCGCTGCCGAACAG
CATCCGATTCGGCCAGCTGGCGGCACTGGAGGAGTTTTTTGTCCGTGGGT
GCGGGGGCCTCGATGCGCTGCCGTACAGCATCGGCCAGCTGACGGCGTTA
AAGACACTAGACATCATGAATTGCAGACGTCTGACCGAGCTGCCGGACAG
CATTTGCCAGCTGACGGCATTGGAGACGCTGATTGTCTGCGGGTGCCAGG
GCCTCACTGCGCTGCCGGACAGCATCGGCCAGCTGGCAGCACTGCGGAAC
CTTGTAGTAAGGAAATGCGAAGCCCTCACTGCGCTGCCGGAGAGCATCGG
CCAGCTGGCAGCGCTGCGGAAGCTCGAAGTAAGGAACTGCGACGCCCTCA
CTGCGCTGCCTGCCAGCATAGGTCAGCTGCCCGCGCTGCAGCACATCAAT
ATCGCAGGCACCCGCTGCACCAGTTTCAGCGTGCATGGTTGCCTAGTTGT
TTGCCAGTAG
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Coding sequence (CDS) from alignment at Contig_54:299701..300660+

>mRNA_7049 ID=mRNA_7049|Name=jgi.p|Trimin1|167894|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=960bp|location=Sequence derived from alignment at Contig_54:299701..300660+ (Tribonema minus UTEX_B_3156 )
ATGCCACAATACCCTTCGGCGCTGCATACACTCCACATCTCCATGTGCCC
GACCCTCACCGAGCTGCCGGAAAGCATTGGCGAGCTGGCGGCGTTGGAGA
CGCTGTGTCTCCTAGGTTGCGGGCTGACCGCACTGCCGGACAGCATCGGC
CAGCTGACGGCGCTCCGGAGGCTCGCACTCGAGGACTGCATGGCCCTCAC
CGCGCTGCCGGACAGCATTGGCCAGCTGACGGCGCTCCAGACGCTCACAA
TCGACGGGTGCACGGCCCTCACCGCGCTGCCGGACAGCATCTGCGAGCTG
GCGGCTTTAACGGAGCTTACTATCGATGCGTGCTGGGGACTCACTGCGCT
GCCGGACGGCATCCACCAGCTGGCGGCGTTGAAGTCGCTTTCTGTGGGGG
GCAAGGGGCTGACCGTGCTGCCGGACAGCATTGGCCAGCTGGCGGCCTTG
GAGACGCTTGGTTTCTATGGGCTCCAGCGCCGCATTGCGCTGCCGAACAG
CATCCGATTCGGCCAGCTGGCGGCACTGGAGGAGTTTTTTGTCCGTGGGT
GCGGGGGCCTCGATGCGCTGCCGTACAGCATCGGCCAGCTGACGGCGTTA
AAGACACTAGACATCATGAATTGCAGACGTCTGACCGAGCTGCCGGACAG
CATTTGCCAGCTGACGGCATTGGAGACGCTGATTGTCTGCGGGTGCCAGG
GCCTCACTGCGCTGCCGGACAGCATCGGCCAGCTGGCAGCACTGCGGAAC
CTTGTAGTAAGGAAATGCGAAGCCCTCACTGCGCTGCCGGAGAGCATCGG
CCAGCTGGCAGCGCTGCGGAAGCTCGAAGTAAGGAACTGCGACGCCCTCA
CTGCGCTGCCTGCCAGCATAGGTCAGCTGCCCGCGCTGCAGCACATCAAT
ATCGCAGGCACCCGCTGCACCAGTTTCAGCGTGCATGGTTGCCTAGTTGT
TTGCCAGTAG
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