mRNA_7009 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|152835
Unique NamemRNA_7009
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|152835 vs. uniprot
Match: A0A836CB25_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB25_9STRA)

HSP 1 Score: 132 bits (333), Expect = 1.220e-37
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 1 
Query:    1 PWGTSTVKLACDKGHHDTAMWLINNNCPADDTVAVSAAAQGSVPLLTRIRELGCPMWTD 177
            PWGTSTVKLACDKGHHDTAMWLINNNCPADDTVAVSAAAQGSVPLLTRIRELGCPMWTD
Sbjct:    1 PWGTSTVKLACDKGHHDTAMWLINNNCPADDTVAVSAAAQGSVPLLTRIRELGCPMWTD 59
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BLAST of jgi.p|Trimin1|152835 vs. uniprot
Match: A0A835YXV6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXV6_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 1.390e-20
Identity = 44/52 (84.62%), Postives = 46/52 (88.46%), Query Frame = 1 
Query:    1 PWGTSTVKLACDKGHHDTAMWLINNNCPADDTVAVSAAAQGSVPLLTRIREL 156
            PWGTSTVKLACD GH   A WLIN+NCP DDTVAVSAAAQGSVPLLTR+REL
Sbjct:  268 PWGTSTVKLACDNGHLAIAAWLINHNCPVDDTVAVSAAAQGSVPLLTRLREL 319
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BLAST of jgi.p|Trimin1|152835 vs. uniprot
Match: A0A836CB53_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB53_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 1.270e-18
Identity = 39/51 (76.47%), Postives = 44/51 (86.27%), Query Frame = 1 
Query:    1 PWGTSTVKLACDKGHHDTAMWLINNNCPADDTVAVSAAAQGSVPLLTRIRE 153
            PWG+STVK ACD GHH  A WLI+N+CP DDTVAVSAAAQG+VPLL R+RE
Sbjct:   30 PWGSSTVKSACDHGHHGIAEWLIDNDCPVDDTVAVSAAAQGNVPLLRRLRE 80
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BLAST of jgi.p|Trimin1|152835 vs. uniprot
Match: A0A836CAH4_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAH4_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 3.140e-11
Identity = 30/59 (50.85%), Postives = 32/59 (54.24%), Query Frame = 1 
Query:    1 PWGTSTVKLACDKGHHDTAMWLINNNCPADDTVAVSAAAQGSVPLLTRIRELGCPMWTD 177
            PWGT TVKLAC+KGH DTAMWL N+NCP                       L CPMWTD
Sbjct:   24 PWGTGTVKLACEKGHRDTAMWLFNHNCP-----------------------LRCPMWTD 59
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|152835 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A836CB25_9STRA1.220e-37100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835YXV6_9STRA1.390e-2084.62Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CB53_9STRA1.270e-1876.47Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CAH4_9STRA3.140e-1150.85Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_54contigContig_54:104637..105008 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|152835|gw1.54.197.1
Hectar predicted targeting categoryother localisation
TranscriptId153157
TrackFilteredModels1
ProteinId152835
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|152835gene_7009Tribonema minus UTEX_B_3156 geneContig_54 104637..105008 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_7009_1exon_7009_1Tribonema minus UTEX_B_3156 exonContig_54 104637..105008 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_7009CDS_7009Tribonema minus UTEX_B_3156 CDSContig_54 104637..105008 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|152835Trimin1|152835|gw1.54.197.1Tribonema minus UTEX_B_3156 polypeptideContig_54 104637..105008 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_7009 ID=mRNA_7009|Name=jgi.p|Trimin1|152835|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=372bp|location=Sequence derived from alignment at Contig_54:104637..105008+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CCGTGGGGTACCAGCACCGTGAAGCTGGCGTGCGACAAGGGGCACCATGA
CACCGCGATGTGGCTCATCAACAACAACTGCCCTGCGGACGACACCGTCG
CCGTGTCTGCCGCGGCGCAAGGCAGCGTCCCTCTGCTAACGCGCATCCGC
GAGCTGGGCTGCCCCATGTGGACGGACACTTGCGCTGCGGCGGCGCGCCA
CGGTCACCTCGCTGCCCTGCAGTACCTTCGCACCCAGCACATCCCCATGG
ACGAGCTGACGCCTGCCGCTGCGGCGCGCGGTGGCCACATCGACGTCCTG
CAGTGGACTTTCGCCATCGAGTGCGTCGTTGACGAGTCGGCCTGCGAGGA
AGCGGCGCGCGGCGGTCAAGTC
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protein sequence of jgi.p|Trimin1|152835

>Trimin1|152835|gw1.54.197.1 ID=Trimin1|152835|gw1.54.197.1|Name=jgi.p|Trimin1|152835|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=124bp
PWGTSTVKLACDKGHHDTAMWLINNNCPADDTVAVSAAAQGSVPLLTRIR
ELGCPMWTDTCAAAARHGHLAALQYLRTQHIPMDELTPAAAARGGHIDVL
QWTFAIECVVDESACEEAARGGQV
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mRNA from alignment at Contig_54:104637..105008+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7009 ID=mRNA_7009|Name=jgi.p|Trimin1|152835|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=372bp|location=Sequence derived from alignment at Contig_54:104637..105008+ (Tribonema minus UTEX_B_3156 )
CCGTGGGGTACCAGCACCGTGAAGCTGGCGTGCGACAAGGGGCACCATGA
CACCGCGATGTGGCTCATCAACAACAACTGCCCTGCGGACGACACCGTCG
CCGTGTCTGCCGCGGCGCAAGGCAGCGTCCCTCTGCTAACGCGCATCCGC
GAGCTGGGCTGCCCCATGTGGACGGACACTTGCGCTGCGGCGGCGCGCCA
CGGTCACCTCGCTGCCCTGCAGTACCTTCGCACCCAGCACATCCCCATGG
ACGAGCTGACGCCTGCCGCTGCGGCGCGCGGTGGCCACATCGACGTCCTG
CAGTGGACTTTCGCCATCGAGTGCGTCGTTGACGAGTCGGCCTGCGAGGA
AGCGGCGCGCGGCGGTCAAGTC
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Coding sequence (CDS) from alignment at Contig_54:104637..105008+

>mRNA_7009 ID=mRNA_7009|Name=jgi.p|Trimin1|152835|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=372bp|location=Sequence derived from alignment at Contig_54:104637..105008+ (Tribonema minus UTEX_B_3156 )
CCGTGGGGTACCAGCACCGTGAAGCTGGCGTGCGACAAGGGGCACCATGA
CACCGCGATGTGGCTCATCAACAACAACTGCCCTGCGGACGACACCGTCG
CCGTGTCTGCCGCGGCGCAAGGCAGCGTCCCTCTGCTAACGCGCATCCGC
GAGCTGGGCTGCCCCATGTGGACGGACACTTGCGCTGCGGCGGCGCGCCA
CGGTCACCTCGCTGCCCTGCAGTACCTTCGCACCCAGCACATCCCCATGG
ACGAGCTGACGCCTGCCGCTGCGGCGCGCGGTGGCCACATCGACGTCCTG
CAGTGGACTTTCGCCATCGAGTGCGTCGTTGACGAGTCGGCCTGCGAGGA
AGCGGCGCGCGGCGGTCAAGTC
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