mRNA_7076 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|136301
Unique NamemRNA_7076
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|136301 vs. uniprot
Match: A0A836CAJ3_9STRA (DnaJ domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAJ3_9STRA)

HSP 1 Score: 145 bits (365), Expect = 5.590e-44
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1
Query:    1 MQRLPVSDLYAILGVAGTASEHAIRKAYMEQARRYHPDKISITSTQAERTAAEEQFKAIGSAQEVLRDTVERSKYD 228
            MQRLPVSDLYAILGVAGTASEHAIRKAYMEQARRYHPDKISITSTQAERTAAEEQFKAIGSAQEVLRDTVERSKYD
Sbjct:    1 MQRLPVSDLYAILGVAGTASEHAIRKAYMEQARRYHPDKISITSTQAERTAAEEQFKAIGSAQEVLRDTVERSKYD 76          
BLAST of jgi.p|Trimin1|136301 vs. uniprot
Match: A0A835ZFK2_9STRA (J domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFK2_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 3.740e-22
Identity = 50/64 (78.12%), Postives = 55/64 (85.94%), Query Frame = 1
Query:   37 LGVAGTASEHAIRKAYMEQARRYHPDKISITSTQAERTAAEEQFKAIGSAQEVLRDTVERSKYD 228
            LGVA TASE  I+KAYMEQARRYHPDKI +T+TQAER AAEE+ KA+ SAQEVLRD  ERSKYD
Sbjct:   41 LGVAETASEPEIKKAYMEQARRYHPDKIPVTATQAERAAAEERVKAVVSAQEVLRDAGERSKYD 104          
BLAST of jgi.p|Trimin1|136301 vs. uniprot
Match: A0A848C0L9_9FUSO (Chaperone protein DnaJ n=3 Tax=Fusobacterium TaxID=848 RepID=A0A848C0L9_9FUSO)

HSP 1 Score: 66.6 bits (161), Expect = 4.010e-11
Identity = 36/69 (52.17%), Postives = 48/69 (69.57%), Query Frame = 1
Query:   22 DLYAILGVAGTASEHAIRKAYMEQARRYHPDKISITSTQAERTAAEEQFKAIGSAQEVLRDTVERSKYD 228
            D Y +LGV  TASE  I+KAY + A +YHPD+ S  +T+ E+  AEE+FK +  A +VL DT +RSKYD
Sbjct:    5 DYYDLLGVEKTASEAEIKKAYRKLAMKYHPDRFS-NATETEKKEAEEKFKELNEAYQVLSDTDKRSKYD 72          
BLAST of jgi.p|Trimin1|136301 vs. uniprot
Match: A0A2V7NFP9_9BACT (Chaperone protein DnaJ n=2 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A2V7NFP9_9BACT)

HSP 1 Score: 65.5 bits (158), Expect = 1.040e-10
Identity = 37/69 (53.62%), Postives = 47/69 (68.12%), Query Frame = 1
Query:   22 DLYAILGVAGTASEHAIRKAYMEQARRYHPDKISITSTQAERTAAEEQFKAIGSAQEVLRDTVERSKYD 228
            D YA+LGVA  A E  I+KAY   A +YHPD+++     AE+TAAEE+FK I  A EVLRD  +R+ YD
Sbjct:    6 DYYALLGVARDAGEADIKKAYRRLAMQYHPDRVAA----AEKTAAEEKFKEITEAYEVLRDPDKRAAYD 70          
BLAST of jgi.p|Trimin1|136301 vs. uniprot
Match: A0A1Q5PMG9_9ACTO (Molecular chaperone DnaJ n=1 Tax=Boudabousia marimammalium TaxID=156892 RepID=A0A1Q5PMG9_9ACTO)

HSP 1 Score: 65.1 bits (157), Expect = 1.280e-10
Identity = 37/69 (53.62%), Postives = 45/69 (65.22%), Query Frame = 1
Query:   22 DLYAILGVAGTASEHAIRKAYMEQARRYHPDKISITSTQAERTAAEEQFKAIGSAQEVLRDTVERSKYD 228
            D YA+LGV+ TASE  I+KAY + AR+YHPDK           AAEE+FK IG A +VL D  ER +YD
Sbjct:   10 DFYAVLGVSKTASEDEIKKAYRKLARKYHPDKNPGDK------AAEEKFKEIGEAYQVLSDPKERKQYD 72          
BLAST of jgi.p|Trimin1|136301 vs. uniprot
Match: S7QBR3_GLOTA (J domain-containing protein n=1 Tax=Gloeophyllum trabeum (strain ATCC 11539 / FP-39264 / Madison 617) TaxID=670483 RepID=S7QBR3_GLOTA)

HSP 1 Score: 65.1 bits (157), Expect = 1.510e-10
Identity = 36/70 (51.43%), Postives = 45/70 (64.29%), Query Frame = 1
Query:   19 SDLYAILGVAGTASEHAIRKAYMEQARRYHPDKISITSTQAERTAAEEQFKAIGSAQEVLRDTVERSKYD 228
            ++LY  LGVA  AS   IR+AY ++A + HPDK+    TQ ER AAEEQF+ +  A EVL DT  R  YD
Sbjct:    4 TNLYETLGVAKDASPDEIRRAYKKRALQTHPDKLGPNITQKEREAAEEQFRKVNHAYEVLNDTENRKIYD 73          
BLAST of jgi.p|Trimin1|136301 vs. uniprot
Match: A0A3B9KTQ9_9FIRM (Molecular chaperone DnaJ (Fragment) n=1 Tax=Clostridiales bacterium TaxID=1898207 RepID=A0A3B9KTQ9_9FIRM)

HSP 1 Score: 64.3 bits (155), Expect = 1.680e-10
Identity = 36/69 (52.17%), Postives = 46/69 (66.67%), Query Frame = 1
Query:   22 DLYAILGVAGTASEHAIRKAYMEQARRYHPDKISITSTQAERTAAEEQFKAIGSAQEVLRDTVERSKYD 228
            D Y ILGV   ASE  I+ AY + A++YHPD  S T  ++ER AAEEQFK I  A +VL D+ +R+ YD
Sbjct:    6 DYYEILGVQKNASEDEIKSAYRKMAKKYHPDLYS-TKPESERKAAEEQFKKINHAYDVLSDSQKRAAYD 73          
BLAST of jgi.p|Trimin1|136301 vs. uniprot
Match: UPI0015A0041C (molecular chaperone DnaJ n=1 Tax=Fusobacterium perfoetens TaxID=852 RepID=UPI0015A0041C)

HSP 1 Score: 64.3 bits (155), Expect = 2.680e-10
Identity = 36/69 (52.17%), Postives = 47/69 (68.12%), Query Frame = 1
Query:   22 DLYAILGVAGTASEHAIRKAYMEQARRYHPDKISITSTQAERTAAEEQFKAIGSAQEVLRDTVERSKYD 228
            D Y +LGV  TASE+ I+KAY + A +YHPDK S  S + E+  AEE+FK +  A +VL D  +RSKYD
Sbjct:    5 DYYDLLGVEKTASENDIKKAYRKLAMKYHPDKYSNAS-EKEKKEAEEKFKEVNEAYQVLSDPDKRSKYD 72          
BLAST of jgi.p|Trimin1|136301 vs. uniprot
Match: A0A409YJL9_9AGAR (J domain-containing protein n=1 Tax=Gymnopilus dilepis TaxID=231916 RepID=A0A409YJL9_9AGAR)

HSP 1 Score: 63.9 bits (154), Expect = 3.630e-10
Identity = 32/71 (45.07%), Postives = 49/71 (69.01%), Query Frame = 1
Query:   16 VSDLYAILGVAGTASEHAIRKAYMEQARRYHPDKISITSTQAERTAAEEQFKAIGSAQEVLRDTVERSKYD 228
            +S LY  LG+   A +  IRKAY ++A + HPD++  T+T A++ AAEEQF+ + +A E+L D  +RS+YD
Sbjct:    1 MSGLYEELGIPKDAPQEQIRKAYKKRALQTHPDRLPPTATPADKAAAEEQFRKVNNAYEILSDPKKRSEYD 71          
BLAST of jgi.p|Trimin1|136301 vs. uniprot
Match: UPI001A9D94B5 (dnaJ protein homolog 1-like n=1 Tax=Ixodes scapularis TaxID=6945 RepID=UPI001A9D94B5)

HSP 1 Score: 61.2 bits (147), Expect = 3.650e-10
Identity = 34/68 (50.00%), Postives = 42/68 (61.76%), Query Frame = 1
Query:   22 DLYAILGVAGTASEHAIRKAYMEQARRYHPDKISITSTQAERTAAEEQFKAIGSAQEVLRDTVERSKY 225
            D Y ILGV  TA++H I+KAY + A+RYHPDK            AEE+FK +G A EVL D  +R KY
Sbjct:    4 DFYKILGVGRTATQHDIKKAYRKLAKRYHPDKNKSPD-------AEEKFKELGKAYEVLSDKKKRDKY 64          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|136301 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CAJ3_9STRA5.590e-44100.00DnaJ domain-containing protein (Fragment) n=1 Tax=... [more]
A0A835ZFK2_9STRA3.740e-2278.13J domain-containing protein n=1 Tax=Tribonema minu... [more]
A0A848C0L9_9FUSO4.010e-1152.17Chaperone protein DnaJ n=3 Tax=Fusobacterium TaxID... [more]
A0A2V7NFP9_9BACT1.040e-1053.62Chaperone protein DnaJ n=2 Tax=Gemmatimonadetes ba... [more]
A0A1Q5PMG9_9ACTO1.280e-1053.62Molecular chaperone DnaJ n=1 Tax=Boudabousia marim... [more]
S7QBR3_GLOTA1.510e-1051.43J domain-containing protein n=1 Tax=Gloeophyllum t... [more]
A0A3B9KTQ9_9FIRM1.680e-1052.17Molecular chaperone DnaJ (Fragment) n=1 Tax=Clostr... [more]
UPI0015A0041C2.680e-1052.17molecular chaperone DnaJ n=1 Tax=Fusobacterium per... [more]
A0A409YJL9_9AGAR3.630e-1045.07J domain-containing protein n=1 Tax=Gymnopilus dil... [more]
UPI001A9D94B53.650e-1050.00dnaJ protein homolog 1-like n=1 Tax=Ixodes scapula... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_54contigContig_54:504101..504328 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|136301|gw1.54.52.1
BRITEko00000,ko03029,ko03110
KEGG koko:K03686
Preferred namednaJ
DescriptionATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins
COG categoryO
Max annot lvl32066|Fusobacteria
EggNOG OGsCOG0484@1|root,COG0484@2|Bacteria,378NF@32066|Fusobacteria
Evalue5.93e-12
Seed ortholog1319815.HMPREF0202_00899
Hectar predicted targeting categoryother localisation
TranscriptId136623
TrackFilteredModels1
ProteinId136301
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|136301gene_7076Tribonema minus UTEX_B_3156 geneContig_54 504101..504328 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_7076_1exon_7076_1Tribonema minus UTEX_B_3156 exonContig_54 504101..504328 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_7076CDS_7076Tribonema minus UTEX_B_3156 CDSContig_54 504101..504328 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|136301Trimin1|136301|gw1.54.52.1Tribonema minus UTEX_B_3156 polypeptideContig_54 504101..504328 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_7076 ID=mRNA_7076|Name=jgi.p|Trimin1|136301|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=228bp|location=Sequence derived from alignment at Contig_54:504101..504328+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGCGGTTACCTGTCAGTGACCTGTACGCCATTTTGGGGGTTGCAGG
AACAGCCAGCGAGCATGCAATAAGAAAGGCCTACATGGAACAAGCGCGCA
GGTATCATCCTGACAAGATATCAATTACCTCCACTCAAGCAGAGAGAACG
GCTGCAGAAGAGCAGTTCAAGGCCATAGGCAGCGCACAGGAGGTTTTGCG
GGATACTGTTGAACGCTCAAAGTATGAT
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protein sequence of jgi.p|Trimin1|136301

>Trimin1|136301|gw1.54.52.1 ID=Trimin1|136301|gw1.54.52.1|Name=jgi.p|Trimin1|136301|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=76bp
MQRLPVSDLYAILGVAGTASEHAIRKAYMEQARRYHPDKISITSTQAERT
AAEEQFKAIGSAQEVLRDTVERSKYD
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mRNA from alignment at Contig_54:504101..504328+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7076 ID=mRNA_7076|Name=jgi.p|Trimin1|136301|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=228bp|location=Sequence derived from alignment at Contig_54:504101..504328+ (Tribonema minus UTEX_B_3156 )
ATGCAGCGGTTACCTGTCAGTGACCTGTACGCCATTTTGGGGGTTGCAGG AACAGCCAGCGAGCATGCAATAAGAAAGGCCTACATGGAACAAGCGCGCA GGTATCATCCTGACAAGATATCAATTACCTCCACTCAAGCAGAGAGAACG GCTGCAGAAGAGCAGTTCAAGGCCATAGGCAGCGCACAGGAGGTTTTGCG GGATACTGTTGAACGCTCAAAGTATGAT
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Coding sequence (CDS) from alignment at Contig_54:504101..504328+

>mRNA_7076 ID=mRNA_7076|Name=jgi.p|Trimin1|136301|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=228bp|location=Sequence derived from alignment at Contig_54:504101..504328+ (Tribonema minus UTEX_B_3156 )
ATGCAGCGGTTACCTGTCAGTGACCTGTACGCCATTTTGGGGGTTGCAGG
AACAGCCAGCGAGCATGCAATAAGAAAGGCCTACATGGAACAAGCGCGCA
GGTATCATCCTGACAAGATATCAATTACCTCCACTCAAGCAGAGAGAACG
GCTGCAGAAGAGCAGTTCAAGGCCATAGGCAGCGCACAGGAGGTTTTGCG
GGATACTGTTGAACGCTCAAAGTATGAT
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