mRNA_19110 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|133053
Unique NamemRNA_19110
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|133053 vs. uniprot
Match: A0A835YV09_9STRA (Subtilisin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV09_9STRA)

HSP 1 Score: 137 bits (344), Expect = 1.190e-39
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 1 
Query:    1 YAFVEGTSMATPHVAGVAALIRGKKKGRISPDQMLEYLKRCSLDLGDKGKDPIYGYGLVSASKVIDL 201
            YAFVEGTSMATPHVAGVAALIRGKKKGRISPDQMLEYLKRCSLDLGDKGKDPIYGYGLVSASKVIDL
Sbjct:  107 YAFVEGTSMATPHVAGVAALIRGKKKGRISPDQMLEYLKRCSLDLGDKGKDPIYGYGLVSASKVIDL 173
[Close]
BLAST of jgi.p|Trimin1|133053 vs. uniprot
Match: A0A835YY96_9STRA (Subtilisin n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YY96_9STRA)

HSP 1 Score: 137 bits (344), Expect = 1.400e-36
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 1 
Query:    1 YAFVEGTSMATPHVAGVAALIRGKKKGRISPDQMLEYLKRCSLDLGDKGKDPIYGYGLVSASKVIDL 201
            YAFVEGTSMATPHVAGVAALIRGKKKGRISPDQMLEYLKRCSLDLGDKGKDPIYGYGLVSASKVIDL
Sbjct:  458 YAFVEGTSMATPHVAGVAALIRGKKKGRISPDQMLEYLKRCSLDLGDKGKDPIYGYGLVSASKVIDL 524
[Close]
BLAST of jgi.p|Trimin1|133053 vs. uniprot
Match: A0A836C9R8_9STRA (Subtilisin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9R8_9STRA)

HSP 1 Score: 122 bits (307), Expect = 2.360e-31
Identity = 59/67 (88.06%), Postives = 63/67 (94.03%), Query Frame = 1 
Query:    1 YAFVEGTSMATPHVAGVAALIRGKKKGRISPDQMLEYLKRCSLDLGDKGKDPIYGYGLVSASKVIDL 201
            YAFV GTSMATPHVAGVAALIRGKKKGRIS DQM EYLK+CS DLGDKGKDPIYG+GL+SASKV+DL
Sbjct:  448 YAFVAGTSMATPHVAGVAALIRGKKKGRISVDQMKEYLKQCSYDLGDKGKDPIYGHGLISASKVVDL 514
[Close]
BLAST of jgi.p|Trimin1|133053 vs. uniprot
Match: A0A836C9E9_9STRA (Subtilisin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9E9_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 2.510e-20
Identity = 43/67 (64.18%), Postives = 52/67 (77.61%), Query Frame = 1 
Query:    1 YAFVEGTSMATPHVAGVAALIRGKKKGRISPDQMLEYLKRCSLDLGDKGKDPIYGYGLVSASKVIDL 201
            Y +  G SMATPHVAGVAALI GKK  R+ PDQM +YLK+CS D+G KGKD  +GYG ++A KV+DL
Sbjct:  516 YGWFPGNSMATPHVAGVAALITGKKGKRVPPDQMFKYLKQCSDDIGAKGKDQRFGYGRINAGKVVDL 582
[Close]
BLAST of jgi.p|Trimin1|133053 vs. uniprot
Match: A0A835YQX2_9STRA (Subtilisin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQX2_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 1.220e-19
Identity = 44/67 (65.67%), Postives = 52/67 (77.61%), Query Frame = 1 
Query:    1 YAFVEGTSMATPHVAGVAALIRGKKKGRISPDQMLEYLKRCSLDLGDKGKDPIYGYGLVSASKVIDL 201
            YA+  GTSMATPHVAGVAALI  K   R SP Q+LEYLK+CS D+G KGKD  +G+G +SA KV+DL
Sbjct:  828 YAWAAGTSMATPHVAGVAALIVAKHGKRTSPAQLLEYLKQCSDDIGAKGKDDYFGFGRISAGKVVDL 894
[Close]
BLAST of jgi.p|Trimin1|133053 vs. uniprot
Match: A0A835ZJE0_9STRA (Subtilisin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJE0_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 2.490e-19
Identity = 42/67 (62.69%), Postives = 53/67 (79.10%), Query Frame = 1 
Query:    1 YAFVEGTSMATPHVAGVAALIRGKKKGRISPDQMLEYLKRCSLDLGDKGKDPIYGYGLVSASKVIDL 201
            YA+V GTSMA PHVAGVAALI  K+    SP Q+L+YLK+CS DLG KGKD ++G+G ++A KV+DL
Sbjct:  282 YAWVSGTSMAAPHVAGVAALIVAKRGKPTSPAQLLKYLKQCSDDLGTKGKDDLFGFGRINAGKVVDL 348
[Close]
BLAST of jgi.p|Trimin1|133053 vs. uniprot
Match: A0A835ZHJ0_9STRA (Subtilisin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHJ0_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 2.750e-18
Identity = 40/67 (59.70%), Postives = 51/67 (76.12%), Query Frame = 1 
Query:    1 YAFVEGTSMATPHVAGVAALIRGKKKGRISPDQMLEYLKRCSLDLGDKGKDPIYGYGLVSASKVIDL 201
            YA+V GT MA PHVAGVAALI  K+    SP Q+L+YLK+CS DLG KGKD ++G+G ++A K +DL
Sbjct:  258 YAWVSGTGMAAPHVAGVAALIVAKRGKPTSPAQLLKYLKQCSDDLGTKGKDDLFGFGRINAGKAVDL 324
[Close]
BLAST of jgi.p|Trimin1|133053 vs. uniprot
Match: A0A835ZEI7_9STRA (Subtilisin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEI7_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 3.680e-18
Identity = 39/67 (58.21%), Postives = 52/67 (77.61%), Query Frame = 1 
Query:    1 YAFVEGTSMATPHVAGVAALIRGKKKGRISPDQMLEYLKRCSLDLGDKGKDPIYGYGLVSASKVIDL 201
            Y ++ GTSMA+PHVAGVAALI GK   R+ P ++L YLK+C+ D+GD GKD  YG+G ++A KV+DL
Sbjct:  469 YGWLAGTSMASPHVAGVAALIVGKAGRRVPPQELLGYLKQCTNDIGDAGKDAKYGFGRINAGKVVDL 535
[Close]
BLAST of jgi.p|Trimin1|133053 vs. uniprot
Match: A0A836CK69_9STRA (Subtilisin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK69_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 2.000e-17
Identity = 40/67 (59.70%), Postives = 49/67 (73.13%), Query Frame = 1 
Query:    1 YAFVEGTSMATPHVAGVAALIRGKKKGRISPDQMLEYLKRCSLDLGDKGKDPIYGYGLVSASKVIDL 201
            Y ++ GTSMA PHVAGVAALI GK   R+SPD +L +LK C+ DLG  GKD  YG G ++A KV+DL
Sbjct:  298 YGWIAGTSMAAPHVAGVAALIVGKAGRRVSPDALLRHLKACTNDLGAAGKDAKYGNGRINAGKVVDL 364
[Close]
BLAST of jgi.p|Trimin1|133053 vs. uniprot
Match: A0A835YS78_9STRA (Subtilisin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS78_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 3.440e-17
Identity = 37/67 (55.22%), Postives = 50/67 (74.63%), Query Frame = 1 
Query:    1 YAFVEGTSMATPHVAGVAALIRGKKKGRISPDQMLEYLKRCSLDLGDKGKDPIYGYGLVSASKVIDL 201
            YA++ GTSMA PHVAGVAALI  K+   ++PD++  YLK+C+ DLG KGKD  +G G ++A KV+ L
Sbjct:  101 YAWLAGTSMAAPHVAGVAALIVAKRGRPVAPDKLFAYLKQCTNDLGPKGKDDKFGSGRINAGKVVSL 167
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|133053 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YV09_9STRA1.190e-39100.00Subtilisin n=1 Tax=Tribonema minus TaxID=303371 Re... [more]
A0A835YY96_9STRA1.400e-36100.00Subtilisin n=2 Tax=Tribonema minus TaxID=303371 Re... [more]
A0A836C9R8_9STRA2.360e-3188.06Subtilisin n=1 Tax=Tribonema minus TaxID=303371 Re... [more]
A0A836C9E9_9STRA2.510e-2064.18Subtilisin n=1 Tax=Tribonema minus TaxID=303371 Re... [more]
A0A835YQX2_9STRA1.220e-1965.67Subtilisin n=1 Tax=Tribonema minus TaxID=303371 Re... [more]
A0A835ZJE0_9STRA2.490e-1962.69Subtilisin n=1 Tax=Tribonema minus TaxID=303371 Re... [more]
A0A835ZHJ0_9STRA2.750e-1859.70Subtilisin n=1 Tax=Tribonema minus TaxID=303371 Re... [more]
A0A835ZEI7_9STRA3.680e-1858.21Subtilisin n=1 Tax=Tribonema minus TaxID=303371 Re... [more]
A0A836CK69_9STRA2.000e-1759.70Subtilisin n=1 Tax=Tribonema minus TaxID=303371 Re... [more]
A0A835YS78_9STRA3.440e-1755.22Subtilisin n=1 Tax=Tribonema minus TaxID=303371 Re... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_531contigContig_531:4201..4401 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|133053|gw1.531.3.1
DescriptionSubtilase family
COG categoryO
Max annot lvl976|Bacteroidetes
EggNOG OGsCOG1404@1|root,COG1404@2|Bacteria,4NFFV@976|Bacteroidetes,1IWXR@117747|Sphingobacteriia
Evalue1.03e-12
Seed ortholog929556.Solca_4148
Hectar predicted targeting categoryother localisation
TranscriptId133375
TrackFilteredModels1
ProteinId133053
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|133053gene_19110Tribonema minus UTEX_B_3156 geneContig_531 4201..4401 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_19110_1exon_19110_1Tribonema minus UTEX_B_3156 exonContig_531 4201..4401 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_19110CDS_19110Tribonema minus UTEX_B_3156 CDSContig_531 4201..4401 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|133053Trimin1|133053|gw1.531.3.1Tribonema minus UTEX_B_3156 polypeptideContig_531 4201..4401 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_19110 ID=mRNA_19110|Name=jgi.p|Trimin1|133053|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=201bp|location=Sequence derived from alignment at Contig_531:4201..4401- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TATGCGTTCGTTGAAGGGACGTCGATGGCGACACCTCATGTAGCAGGTGT
CGCTGCGCTGATTCGCGGCAAGAAGAAGGGGCGCATTTCGCCTGACCAGA
TGCTGGAGTACCTCAAGCGGTGCAGCCTCGACTTGGGCGACAAGGGCAAG
GACCCCATCTACGGCTACGGTCTCGTCAGCGCGAGCAAGGTCATTGACCT
C
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protein sequence of jgi.p|Trimin1|133053

>Trimin1|133053|gw1.531.3.1 ID=Trimin1|133053|gw1.531.3.1|Name=jgi.p|Trimin1|133053|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=67bp
YAFVEGTSMATPHVAGVAALIRGKKKGRISPDQMLEYLKRCSLDLGDKGK
DPIYGYGLVSASKVIDL
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mRNA from alignment at Contig_531:4201..4401-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_19110 ID=mRNA_19110|Name=jgi.p|Trimin1|133053|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=201bp|location=Sequence derived from alignment at Contig_531:4201..4401- (Tribonema minus UTEX_B_3156 )
TATGCGTTCGTTGAAGGGACGTCGATGGCGACACCTCATGTAGCAGGTGT
CGCTGCGCTGATTCGCGGCAAGAAGAAGGGGCGCATTTCGCCTGACCAGA
TGCTGGAGTACCTCAAGCGGTGCAGCCTCGACTTGGGCGACAAGGGCAAG
GACCCCATCTACGGCTACGGTCTCGTCAGCGCGAGCAAGGTCATTGACCT
C
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Coding sequence (CDS) from alignment at Contig_531:4201..4401-

>mRNA_19110 ID=mRNA_19110|Name=jgi.p|Trimin1|133053|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=201bp|location=Sequence derived from alignment at Contig_531:4201..4401- (Tribonema minus UTEX_B_3156 )
TATGCGTTCGTTGAAGGGACGTCGATGGCGACACCTCATGTAGCAGGTGT
CGCTGCGCTGATTCGCGGCAAGAAGAAGGGGCGCATTTCGCCTGACCAGA
TGCTGGAGTACCTCAAGCGGTGCAGCCTCGACTTGGGCGACAAGGGCAAG
GACCCCATCTACGGCTACGGTCTCGTCAGCGCGAGCAAGGTCATTGACCT
C
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