mRNA_8217 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|350005
Unique Name	mRNA_8217
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|350005 vs. uniprot
Match: A0A836CAN2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAN2_9STRA)

HSP 1 Score: 439 bits (1128), Expect = 3.090e-155
Identity = 229/229 (100.00%), Postives = 229/229 (100.00%), Query Frame = 1

Query:    1 MEVAPQKRWQPPPPQTVPMAVEPAASALKTPGVQLGGREAAGIDVLLRPPYAQLELRHHRKRHARTAGSGASAALHDPLLQPSRAAQQEPGTEPNLQEAAAQGQWGSRGGAYAGSVEDSSSAVRSLFAAELEESRGTLVSAGANAAGDADYCALQQMLRGPRKCRSGGGGRDAHVTASSLLQETELSFSSYLTSDEPAYTRMYGSPPPPPTQLPVSSLWRARLNRSRTV 687
            MEVAPQKRWQPPPPQTVPMAVEPAASALKTPGVQLGGREAAGIDVLLRPPYAQLELRHHRKRHARTAGSGASAALHDPLLQPSRAAQQEPGTEPNLQEAAAQGQWGSRGGAYAGSVEDSSSAVRSLFAAELEESRGTLVSAGANAAGDADYCALQQMLRGPRKCRSGGGGRDAHVTASSLLQETELSFSSYLTSDEPAYTRMYGSPPPPPTQLPVSSLWRARLNRSRTV
Sbjct:    1 MEVAPQKRWQPPPPQTVPMAVEPAASALKTPGVQLGGREAAGIDVLLRPPYAQLELRHHRKRHARTAGSGASAALHDPLLQPSRAAQQEPGTEPNLQEAAAQGQWGSRGGAYAGSVEDSSSAVRSLFAAELEESRGTLVSAGANAAGDADYCALQQMLRGPRKCRSGGGGRDAHVTASSLLQETELSFSSYLTSDEPAYTRMYGSPPPPPTQLPVSSLWRARLNRSRTV 229

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|350005 vs. uniprot

BLAST of jgi.p|Trimin1|350005 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A836CAN2_9STRA	3.090e-155	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_53	contig	Contig_53:734751..738406 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|350005\|estExt_Genemark1.C_Ctg_530089
Hectar predicted targeting category	other localisation
TranscriptId	350327
Track	FilteredModels1
ProteinId	350005

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|350005	gene_8217	Tribonema minus UTEX_B_3156	gene	Contig_53 734751..738406 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|350005	Trimin1\|350005\|estExt_Genemark1.C_Ctg_530089	Tribonema minus UTEX_B_3156	polypeptide	Contig_53 734772..738406 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_8217_5	exon_8217_5	Tribonema minus UTEX_B_3156	exon	Contig_53 734751..735170 -
exon_8217_4	exon_8217_4	Tribonema minus UTEX_B_3156	exon	Contig_53 735289..735477 -
exon_8217_3	exon_8217_3	Tribonema minus UTEX_B_3156	exon	Contig_53 736299..736331 -
exon_8217_2	exon_8217_2	Tribonema minus UTEX_B_3156	exon	Contig_53 737781..737825 -
exon_8217_1	exon_8217_1	Tribonema minus UTEX_B_3156	exon	Contig_53 738383..738406 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR3_8217	UTR3_8217	Tribonema minus UTEX_B_3156	three_prime_UTR	Contig_53 734751..734771 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_8217	CDS_8217	Tribonema minus UTEX_B_3156	CDS	Contig_53 738383..738406 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_53:734751..738406-
coding sequence from alignment at Contig_53:734751..738406-

spliced messenger RNA

>mRNA_8217 ID=mRNA_8217|Name=jgi.p|Trimin1|350005|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=711bp|location=Sequence derived from alignment at Contig_53:734751..738406- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGGTCGCTCCGCAGAAGCGCTGGCAGCCGCCTCCGCCGCAGACCGT
GCCAATGGCTGTGGAGCCGGCAGCTTCTGCGCTCAAAACGCCGGGCGTGC
AGCTCGGGGGCAGGGAGGCAGCGGGAATCGATGTGCTGCTGCGGCCACCA
TATGCGCAGCTGGAGCTCAGGCACCACCGAAAACGCCACGCACGGACCGC
CGGAAGCGGCGCATCAGCAGCACTCCACGACCCGCTGCTACAGCCAAGCC
GAGCAGCTCAGCAGGAGCCCGGGACTGAGCCCAATCTTCAAGAGGCTGCG
GCGCAGGGTCAGTGGGGCTCTCGCGGCGGAGCGTACGCGGGGTCCGTGGA
AGACTCTAGCAGCGCGGTGAGGAGCCTGTTTGCTGCGGAATTGGAGGAGT
CCCGCGGCACGCTCGTATCAGCCGGCGCGAATGCCGCCGGCGACGCGGAC
TACTGCGCGCTGCAGCAGATGCTGCGGGGACCGAGGAAATGCCGCAGCGG
CGGCGGCGGAAGGGATGCGCACGTCACGGCGAGCTCGCTGCTGCAAGAGA
CGGAGCTGTCGTTCAGCAGCTACCTCACTTCGGACGAGCCGGCGTACACG
CGCATGTACGGCTCGCCGCCGCCGCCGCCGACGCAGCTGCCGGTGAGCAG
CTTGTGGCGGGCACGCCTCAACAGGTCGAGAACTGTTTAAAGAAGTGTGG
TTTCTGCTTTT

protein sequence of jgi.p|Trimin1|350005

>Trimin1|350005|estExt_Genemark1.C_Ctg_530089 ID=Trimin1|350005|estExt_Genemark1.C_Ctg_530089|Name=jgi.p|Trimin1|350005|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=230bp
MEVAPQKRWQPPPPQTVPMAVEPAASALKTPGVQLGGREAAGIDVLLRPP
YAQLELRHHRKRHARTAGSGASAALHDPLLQPSRAAQQEPGTEPNLQEAA
AQGQWGSRGGAYAGSVEDSSSAVRSLFAAELEESRGTLVSAGANAAGDAD
YCALQQMLRGPRKCRSGGGGRDAHVTASSLLQETELSFSSYLTSDEPAYT
RMYGSPPPPPTQLPVSSLWRARLNRSRTV*

mRNA from alignment at Contig_53:734751..738406-

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8217 ID=mRNA_8217|Name=jgi.p|Trimin1|350005|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3656bp|location=Sequence derived from alignment at Contig_53:734751..738406- (Tribonema minus UTEX_B_3156 )
ATGGAGGTCGCTCCGCAGAAGCGCGTGTGTTTACAAGGAGCCACCAGGGT
TCTCGCCGCAGAGGCAACATTTGAGGCGTAGAGAGCTCCATACCCAGCGT
TTGACGCGCTGCCAGCTGAAATGCCACGCCATCGACCCCCTGCTGGTACC
CCCCATGAAGTCGCTGAGAAACGCCAGGCCTACAGAGCGCTCACTCCTCT
GCAAACAAAACCGGGCAAGCTCCTGCACCCGCCGCACAGGATCAGAGAGC
GCGCTGAGGGTCGCTTTCAACGCGTCCGCACGGTGCTTCGCCAATGCAGT
CCAGAAAGCTGACCGTGGCGAATTGGTACTGTCGCTCGCCTCGCCATTGC
ACGCAGCACTTGGATTTGCAGCGTCACTGTCGCCGGAAGCCGCATGCGGT
CGCAGCAGTCCGCGCAATTCAGCGCCGACGCGCTCTCGTGCTAATTGCAA
GATGCCAACAGAGCGCGTTGCAGTTGACAGATGCGCAAGTGATCGCATAC
CCCCAAGCTTGGTGCGCATGTGACTGATGGCACTAGCCAGCGCGTGCAAC
CAGTGCGGCAGTGCATGCCCTGTTCTCGCAGTGGCAGCCGCCTCCGCCGC
AGACCGTGCCAATGGCTGTGGAGCCGGTACGTCCGAAAAGCACTTATGAT
GGTGCACGGGGACAGCTAGCCGCGAACGCCGCATGTGCGGTGCCGGACTG
CAGCCATCTTGGTACCATGAATATCATGGCCATACACAGAAGGCCATAAG
CGCCTTGAGTGTTGCGTGTGGCGTCATCGTCCACAGCCTTCTGTCAACCC
AGCTGACAGATGTGCGCACTGCTGACTTGTAAGCTCTGAGAGCACTCAAA
ATTGCATCACGCTCCATACCAGTATAGTGCTTGAGGTATATGCGGCACCT
GCACCAAGTGCGCACCATGCAACCCTCACACTGTCCCACGAGAGCCACAT
CGCAGCCCGCCTGTTGCACCTGAATGCTTGCCGCCGGCTCAATTCTGAAC
CACACCACCCCCGTTTGCCAACACATCAGCAGGTTGTGATGCTCATTCGC
CTCCAGCCCAGTGGCTGAGCCCTGACCTCAGGATGCAGCTGCATCTGGCG
CAGAGCCAAGGCTGTCTTGACAAACAGCAGGCTGTCAGCACTTCAGCCAG
AAGGCACCTCCTAGCGTTGGCGTCAACTGGTGCAACAAGTTGCCCTGCCT
GCGAGATGGTGGGTTGTTTCCTCATGGACTAGTGTTTCTCTGCAAGGTGG
ATCCAACAAGGTGCGACTAAGCGGCAGCAGCACACGGCTGATTAGCGCAC
CAATCCATGTCTCGACAGCAGCCAAAAGAGCGCCTTTGCCTGGAAATCAT
CAATGCTAAAAGACATGAGGATGTGCCGCGTTGCTGGTCTGCCAAAGGTT
TGTGCTGGCGTTCCTTACCTGGTGCTTCTGCAATGCCACCTCGAGGCATT
TTCATGGCGGTTGATGACACGGCTCCGCCCTCACTTGGACATTATGCAGT
TGCCCGCTAGAAATCTGTACCAGGAGCACCAAGACACGCAAGACAGGGGT
GATCAGGGCTCGCGCTACCTTGTTTCCTCGTCTAGATTCGAGTGATTGAT
GTTGAAGTGCGCGAAAGTGCCAGTTGGAGCATTAGCATTTGTTCAGTTTG
GTTGATTCACACAAGAGGTCTGCGGCAGTGTTGCAATGGCCGCTTGCCAT
TGCGCCTGCCTTGAGCAGCTTCAAGCTTTGCGGATCGAGGTCTCTGCCCT
TCGAGAAGAGATCAGGAGCGCCCTTGGACGGGAGCAGGAACAGAAGCACT
CTCAGTTGCCGAAAAACCCATTCGTGCAGGGTGAACACGAATGCTTTCCT
GACTGGGAGCGCGCATTGCCAGGAACAGCATGCGGCAGCAGTGATTGCGA
GGACGGCGACGTGCTGAGTGAAATGAGTGATGCAGGATCACGGGACACGT
CCACGGACTTCGGTGCTAAATTCAGCGGACCCATCGCAACTCCCATGGTG
ATGCCACAGGTGGCATTGGCCACATCTGAGAGGAGGGAAAAATCAAGGGC
AGAAGCTTTTTTCATGTGCCGGCAGGCAGCTTCTGCGCTCAAAACGCCGG
GCGTGCAGGTAAGCTCATGCAGCTAGACTAGGCAGCAGCTGGAATTGCAG
TGACTGTTGTGGCCACTGCCGCGCTGCCATTGCTGCTATTCTGGTGCTTC
ACTGCTGACTCAGTAACTTCTTTGCTTTGTGAAATATGTCTGCAGAAGGC
GATTCCTGTCAAAGGCCTCATTGAATCTTGCAGCTGGCGATTCCAGACCA
ACCTCAAGGAGAACAACGCGCGGACAGCAAACATGGTGACTCCTGCGTTG
CCCAGCAATGGAAAGGACGGCAGAGCTTCCTCCAGGCTGCAAGATATCGC
CACACAGACATCAGTGTCCATCGGCGCTGAGAACCCTGCAGCACTTGCAT
CGGGACTGAACAAGGTATTGTGTAATTCCAGCAGATTACTGGTCGCTCTG
AGCTCCTGCAAGCCACATATAGCCAGCTGTCTGAGAAGACATCGGTCGTG
CAAATCAAAGCAGCTGTAAGCATACTGGTGCTTGAAACTATCGCTTCTCT
GCATGCACGCATGGAGAGAACACGGTGACGACTTTCCGATGTAGACCCAT
GAAATGTGTTGGCTACAGAGATGGCATCTGTGGTACCCAACGTCTTACTC
GTCACGGCAGCGGCACGCTATCCAGCGCCACAGCAGTGCATCTGCTTACA
CCTTCAGCTGCACGTACCAGTGGAAAAGCCCACGCTGCCTGACTTTATGA
CAGTGCTTCAGCGACATGCCTGACACATGCGCGTCGTGTGAATTAGCGAC
AAATGACTGATCGACGTATGTGCGCTTGCTTACAACTACAGCTATCTTCA
AACGACCAGCACGCGCCCGCTGCACGGAGCTCGGGGGCAGGGAGGCAGCG
GGAATCGATGTGCTGCTGCGGCCACCATATGCGCAGCTGGAGCTCAGGCA
CCACCGAAAACGCCACGCACGGACCGCCGGAAGCGGCGCATCAGCAGCAC
TCCACGACCCGCTGCTACAGCCAAGCCGAGCAGCTCAGCAGGAGCCCGGG
ACTGAGCCCAATCTTCAAGTCCGCGAGCCCGCACGCAGCCGCTGCCGCAC
AGTGCCGACATGAGGGAGCTGAGCATTGTGACCAAGGGCGGGAATTCGTG
CAAGGAGCGGGGATGCACGCTGTGGGGATGCGCGAGGAGGCTGCGGCGCA
GGGTCAGTGGGGCTCTCGCGGCGGAGCGTACGCGGGGTCCGTGGAAGACT
CTAGCAGCGCGGTGAGGAGCCTGTTTGCTGCGGAATTGGAGGAGTCCCGC
GGCACGCTCGTATCAGCCGGCGCGAATGCCGCCGGCGACGCGGACTACTG
CGCGCTGCAGCAGATGCTGCGGGGACCGAGGAAATGCCGCAGCGGCGGCG
GCGGAAGGGATGCGCACGTCACGGCGAGCTCGCTGCTGCAAGAGACGGAG
CTGTCGTTCAGCAGCTACCTCACTTCGGACGAGCCGGCGTACACGCGCAT
GTACGGCTCGCCGCCGCCGCCGCCGACGCAGCTGCCGGTGAGCAGCTTGT
GGCGGGCACGCCTCAACAGGTCGAGAACTGTTTAAAGAAGTGTGGTTTCT
GCTTTT

Coding sequence (CDS) from alignment at Contig_53:734751..738406-

>mRNA_8217 ID=mRNA_8217|Name=jgi.p|Trimin1|350005|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=690bp|location=Sequence derived from alignment at Contig_53:734751..738406- (Tribonema minus UTEX_B_3156 )
ATGGAGGTCGCTCCGCAGAAGCGCTGGCAGCCGCCTCCGCCGCAGACCGT
GCCAATGGCTGTGGAGCCGGCAGCTTCTGCGCTCAAAACGCCGGGCGTGC
AGCTCGGGGGCAGGGAGGCAGCGGGAATCGATGTGCTGCTGCGGCCACCA
TATGCGCAGCTGGAGCTCAGGCACCACCGAAAACGCCACGCACGGACCGC
CGGAAGCGGCGCATCAGCAGCACTCCACGACCCGCTGCTACAGCCAAGCC
GAGCAGCTCAGCAGGAGCCCGGGACTGAGCCCAATCTTCAAGAGGCTGCG
GCGCAGGGTCAGTGGGGCTCTCGCGGCGGAGCGTACGCGGGGTCCGTGGA
AGACTCTAGCAGCGCGGTGAGGAGCCTGTTTGCTGCGGAATTGGAGGAGT
CCCGCGGCACGCTCGTATCAGCCGGCGCGAATGCCGCCGGCGACGCGGAC
TACTGCGCGCTGCAGCAGATGCTGCGGGGACCGAGGAAATGCCGCAGCGG
CGGCGGCGGAAGGGATGCGCACGTCACGGCGAGCTCGCTGCTGCAAGAGA
CGGAGCTGTCGTTCAGCAGCTACCTCACTTCGGACGAGCCGGCGTACACG
CGCATGTACGGCTCGCCGCCGCCGCCGCCGACGCAGCTGCCGGTGAGCAG
CTTGTGGCGGGCACGCCTCAACAGGTCGAGAACTGTTTAA