mRNA_8225 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|167768
Unique Name	mRNA_8225
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|167768 vs. uniprot
Match: A0A835YPW2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPW2_9STRA)

HSP 1 Score: 283 bits (724), Expect = 1.330e-92
Identity = 269/269 (100.00%), Postives = 269/269 (100.00%), Query Frame = 1

Query:    1 MFGGRRGSASAAATCGHCEQTIVADEKHKGTFFTITEAGAAGKIHTECWEVYQDRNAEKCMHCKGPVAQIPGRYSGKFFAPPAGXXXXXXXXXXXNRKAESVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHATKSEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESCSRHGSFSGEACVYKEGQVXXXXXXXXXXXXXXXXXXXRKPVVGQYYPTGSASGGKCHVECWERFQHANATK 807
            MFGGRRGSASAAATCGHCEQTIVADEKHKGTFFTITEAGAAGKIHTECWEVYQDRNAEKCMHCKGPVAQIPGRYSGKFFAPPAGXXXXXXXXXXXNRKAESVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHATKSEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESCSRHGSFSGEACVYKEGQVXXXXXXXXXXXXXXXXXXXRKPVVGQYYPTGSASGGKCHVECWERFQHANATK
Sbjct:    1 MFGGRRGSASAAATCGHCEQTIVADEKHKGTFFTITEAGAAGKIHTECWEVYQDRNAEKCMHCKGPVAQIPGRYSGKFFAPPAGXXXXXXXXXXXNRKAESVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHATKSEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESCSRHGSFSGEACVYKEGQVXXXXXXXXXXXXXXXXXXXRKPVVGQYYPTGSASGGKCHVECWERFQHANATK 269

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|167768 vs. uniprot

BLAST of jgi.p|Trimin1|167768 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A835YPW2_9STRA	1.330e-92	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_53	contig	Contig_53:766826..771693 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|167768\|e_gw1.53.152.1
Max annot lvl	2759\|Eukaryota
EggNOG OGs	2EZ5B@1\|root,2T0IG@2759\|Eukaryota
Evalue	1.7e-16
Seed ortholog	2880.D8LF36
Hectar predicted targeting category	other localisation
Ec32 ortholog description	conserved unknown protein
Ec32 ortholog	Ec-06_001510.1
TranscriptId	168090
Track	FilteredModels1
ProteinId	167768

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|167768	gene_8225	Tribonema minus UTEX_B_3156	gene	Contig_53 766826..771693 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|167768	Trimin1\|167768\|e_gw1.53.152.1	Tribonema minus UTEX_B_3156	polypeptide	Contig_53 766826..771693 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_8225_1	exon_8225_1	Tribonema minus UTEX_B_3156	exon	Contig_53 766826..766966 +
exon_8225_2	exon_8225_2	Tribonema minus UTEX_B_3156	exon	Contig_53 767823..768094 +
exon_8225_3	exon_8225_3	Tribonema minus UTEX_B_3156	exon	Contig_53 769317..769397 +
exon_8225_4	exon_8225_4	Tribonema minus UTEX_B_3156	exon	Contig_53 770352..770352 +
exon_8225_5	exon_8225_5	Tribonema minus UTEX_B_3156	exon	Contig_53 770678..770841 +
exon_8225_6	exon_8225_6	Tribonema minus UTEX_B_3156	exon	Contig_53 771543..771693 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_8225	CDS_8225	Tribonema minus UTEX_B_3156	CDS	Contig_53 766826..766966 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_53:766826..771693+
coding sequence from alignment at Contig_53:766826..771693+

spliced messenger RNA

>mRNA_8225 ID=mRNA_8225|Name=jgi.p|Trimin1|167768|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=810bp|location=Sequence derived from alignment at Contig_53:766826..771693+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTGGTGGGAGACGAGGCTCTGCCAGCGCTGCGGCGACCTGCGGACA
TTGCGAGCAGACGATAGTGGCAGATGAAAAGCACAAGGGCACCTTCTTCA
CCATAACAGAGGCTGGAGCAGCTGGTAAAATCCACACGGAGTGCTGGGAG
GTGTATCAGGACCGCAACGCCGAAAAGTGCATGCACTGCAAGGGCCCGGT
GGCGCAGATTCCGGGCCGCTACAGCGGAAAGTTCTTTGCTCCGCCGGCGG
GCGGAAAGGTCCACGGAGAGTGCTGGGAGGCGTATAACCGCAAGGCAGAG
AGTGTGGAGCGCTGCGCAATGTGCGCCGAGCCTATCGCGGTGATGCCGGG
AAGGTTCAGCGGACAGTTCTTCGAGTTTGACAACGGCGACAAGATTCACG
GGGAGTGCAAGAAGGCCTACCATGCCACCAAGAGCGAGCGGTGTGCGCAC
TGTGATGAGCCTGTGGCGCCGGAGGCCGGAAAGTTCTCAGGCGAGTTCTT
TGTAGTGGAGGGAGACAGGCGCTGCCACGCCGAGTGCCACGCTGACTTCT
GCGCCAAGCGCGCGCCCAAGTGCCTCCAGTGCCACGAGTCGTGCAGCAGG
CACGGCAGCTTCTCGGGCGAGGCGTGCGTCTACAAGGAGGGGCAGGTGCA
CGCTGAGTGCGACCAGCAGTACCGGGAGGCGCGCGCGCCCAAGTGCGCTG
CCTGCAGGAAGCCCGTCGTGGGGCAGTACTACCCTACCGGCAGCGCCAGC
GGCGGCAAGTGTCACGTGGAGTGCTGGGAGCGTTTCCAGCACGCGAACGC
CACCAAGTAG

protein sequence of jgi.p|Trimin1|167768

>Trimin1|167768|e_gw1.53.152.1 ID=Trimin1|167768|e_gw1.53.152.1|Name=jgi.p|Trimin1|167768|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=270bp
MFGGRRGSASAAATCGHCEQTIVADEKHKGTFFTITEAGAAGKIHTECWE
VYQDRNAEKCMHCKGPVAQIPGRYSGKFFAPPAGGKVHGECWEAYNRKAE
SVERCAMCAEPIAVMPGRFSGQFFEFDNGDKIHGECKKAYHATKSERCAH
CDEPVAPEAGKFSGEFFVVEGDRRCHAECHADFCAKRAPKCLQCHESCSR
HGSFSGEACVYKEGQVHAECDQQYREARAPKCAACRKPVVGQYYPTGSAS
GGKCHVECWERFQHANATK*

mRNA from alignment at Contig_53:766826..771693+

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8225 ID=mRNA_8225|Name=jgi.p|Trimin1|167768|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4868bp|location=Sequence derived from alignment at Contig_53:766826..771693+ (Tribonema minus UTEX_B_3156 )
ATGTTTGGTGGGAGACGAGGCTCTGCCAGCGCTGCGGCGACCTGCGGACA
TTGCGAGCAGACGATAGTGGCAGATGAAAAGCACAAGGGCACCTTCTTCA
CCATAACAGAGGCTGGAGCAGCTGGTAAAATCCACACGGAGGTGAGCTGA
CACTGTCCACCGCAATGTGCTGCTCGAAGCAGACGCAAGCTAATGTTGTT
GTCTGGTGAACACAGAAGGTGTCATGAGGCTGGCGTAAACAACAAATGGG
AAGCTCGTCCAGCATGTGCCTCGAGACTCTTGTGTTTTACCACTGAGCTT
ATGTCTCTGCAACCACACAAGAAAATTCTACAACAAAGTGTTGCAGTGAG
CGCACTTCATGCTATGTCTCCTGCTGCATGCTGCAGTCTACATATCGATG
GGGAATACGGGCACTTAGGATGTGCCCCGTTGCGACTGCCGCAGTTTACT
TTGCTTCAGGGTCAATGTTTAGAGGTATAAAATTGTGTCCTTTGTTTCTG
CTGATGCTCAGTGGCCACTGTTGTACTGCAGCTAACAACTACATGACATT
GCTCATAGCGATACCTTGAACTTACAGTATTTTATCATTGTCCTCAACAT
GCCGTGCAGGACTTGTCTGCCCTGGACGTACCGTCAGGACGGCTGTCAGT
GACAAATACATATTCTGCGCTGATGATCTGGCAAGGAACTACGTCACAAT
GCCGCCAGGCAGTCGTGTTTGAAGCACCAGCAACAAAGCTTCAGTTTGAC
ATGACATCGACGTACAGGTGTAGCATTACTGAACTATACTTCGAAGTACA
CTTCAGAACGAAGTAATCATACGCCAACGCCTGCAAGTCAGAATACAAAG
GGCGTCCCCTTGTTCATCTCTGAAGGCATCACATCTCGCCTTTGCTATTC
CTCTGCTGCAGTGCTAGGAGGCGTATCACGAGCGCAATGGCAAGAGTGCC
TCCACTGCATCATTTTTTCACCTTTACCATGTACTTCTCTGCTGCAGTGC
TGGGAGGTGTATCAGGACCGCAACGCCGAAAAGTGCATGCACTGCAAGGG
CCCGGTGGCGCAGATTCCGGGCCGCTACAGCGGAAAGTTCTTTGCTCCGC
CGGCGGGCGGAAAGGTCCACGGAGAGTGCTGGGAGGCGTATAACCGCAAG
GCAGAGAGTGTGGAGCGCTGCGCAATGTGCGCCGAGCCTATCGCGGTGAT
GCCGGGAAGGTTCAGCGGACAGTTCTTCGAGTTTGACAACGGCGACAAGA
TTCACGGGGAGTGCAAGAAGTGAGTTCCCCGTGAGGATGAAGGACTGCAC
GTATCGCGATTGCATCTGCGGCACCCTTCTGCAATGGTGGTGTCCAGTGC
GTGTGGCGCGCCTCTGCTGAATCATCATCATATTGGGGAGTGCAAGAAGT
GAGCCGCCCGCGAAGGTTACCAGTATCCGTACCGCATGCCCGTAACGCAT
GCTTTGTGAGTTCATCTGCAGCTGCATTCTGCAACGGCATTGGCCAGTAC
GGATTTTGCGAACTGTGCTGTTTCAAAAATTGAATCCAAAATAATTTACA
AGTCAATGTAGGTAATCATTGTCGCCTTGATCAGCGCAGCAGACTCCGAC
TCAGACTCAATGTGTGTGTAGAGAGGCGCACGACACAGGGTGCCCGGGGT
GCTCAGCCACAACGCAATCCATTATTTATTGCGGAATACGAGGTGCTTAA
AGACTGCGCACCATCGCTGATGGCAGAAATAGAATTAGTGAACAGCACCT
GCGCTGCGTGCCTGCACGCCACAACTTGTAGGCTCGGGGTGTTTGACGAT
CGTGCGCGCCGCGTATCAGCATGGCTGCGTATAAAATCGCACTGCCGCAA
ACGCGCACAACGGTTTTGACTCATCGCTGGTGGCTCACACCATGCAAGCT
TTGGGTGTGCTACTTATAAATTGCGCTTCCGGAATTGCGCACAACGCTGT
TGACTCACCATTGATGCAGACAGCTGGTGCTGCAGGAGTAGCCTACACTA
TGTAAGCTTTGACTGTGGTACGCGCACGCAGTGCTCTGGTCAGTGCAAAA
ATGCATATGCTGACGCACACCGTGGCACTGCAGATGTGGTTGTAGTTCAA
CTTGGTTGAGCATTTTTTGCACACTGCTTTGATCATAGCAAGAGCGAATA
CGTTTTTTTTCTTGCTTCACAAATGCCATCGCGGTCCTTGGCGCACAGGA
GGGTCTGGACTGAAGCAGCGCAGCTTGACGTTTTCATGGGGCAGAGCCTG
GGATTTGATCATTGTGTCATGCAAAGGGTTGCTTTGTACACAAGTATAAG
TAGCCTTCTCAATTCTGAAACCAGCATCGTTTATTCACGCTTGTCTGAGA
CCGATATCAATTATTCAGGCTTGCAACATGGTACACTGCTCCTGTCCCAA
GTTGCGCAATCTGCTCCACATTTGATGTTTTATCTTCAAGTCATCTTGCT
CCACGACCGCATTGGTGCGTCACCTGCTGTTCATGTCACAGGGCCTACCA
TGCCACCAAGAGCGAGCGGTGTGCGCACTGTGATGAGCCTGTGGCGCCGG
AGGCCGGAAAGTTCTCAGGCGAGTTCTCACAATAACGCCTCAGCCACGCA
CCTCACTGCGCGCCACAGTGACACATGTGCCACAACCCGGTTTTCTGACT
CAGGCGCACTTCAACCTCATCACACCGCTTGAATAATAGCAATAGCAGAG
CCGGGATTTTCAGGCGAGCTTGCAAGCGATGTCTCAGCACAGGTTTCATC
GAGAACTCGGCATGCCTCACTGCGTGCGGCTCTGACACCCGTGCTGGAAC
TCATTCTCTGGCACTTGACCATGTCAAACTATATGAAAAACGAATCAAAA
GATCGTAGAGCTCTAGGTGACAAGGGATGGTCAGCCGCAAACTTTATAGT
TGGAGCATCAAAGCTTATCTCGACCTCACTTGAAAGGGTGTCGTGCTGGC
AGCAGGACCTGGTCTTGCTTGCAGCTGGAACGCTTCCGGTTGCATGCCAA
AAGCAGAGGTCTATGTGCGTCAGCGGCTGCCAACGCCATGTTGACGATGC
AGCACGAGCAACTAGGTAGATGTATGTACATTGTTCTGTTTGGCGCTGTT
AGGAATGTGGGACCACAGGAAAATCATGGAGATTTGAGCTGGAAATGCGC
GCAACTGCTGGTGCGATTTCTGCGTCGAATGCAGTTGCTCAGTATGAAAT
GAGTGTTGGCCCTGGTTTTGCACGCCCTGGTTGCGTTGTACCTTCTGTAT
GCGTGATTTCCTTGCCATTGGGCGTCCCTATGTTATTCATGATTGCAGGT
ATTGATGGCTTGCCTTTCGCGGTCTTAAGTTTGTCTTGTACAGCAGTGAC
AATGAATGTCGCGCGCCTGGCAGGCGAGTCCTTTCTGGTGAAGGGGGGCG
GGTGGTGCTGCATTCATTCCAGAGGAATTTTGCTGATTTCATGGTCTAAC
GCAGCACCAACAACTTCAACTTCAACAACGCATTTTGCACTTTCGGCACC
GGCGAGCTCTTTGTTTTGTGGTGGAGGGTGACAGGCACTGCCACGCAAAT
GCCTTGTGCTTCTTCTGTATCTATTCATTGCTTTTGGATGTACATGCTGA
TTTGATGGTCTGACGCAATAAGTACAATTTCAGCTTCAACAATGGGTGTG
TGTCGCGCTCAGGCACAGGCGAGTTCTTTGCGACAGGCGCTGCCACGCCG
AGTGCCACACAGACTTCTGCGTTCATTCCAGTAGAATATAATGCCGATGC
GATGGTCTACCGCAATATTAATTCCTGTCAATGCAAATGCTGATCTGATG
GTGTGACGTGACGACACCAACTTCAACTTCAATGCGCACGCCCACAGGCG
AGTTCTTTGTAGTGGAGGGAGACAGGCGCTGCCACGCCGAGTGCCACGCT
GACTTCTGCGCCAAGCGCGCGCCCAAGTGCCTCCAGTGCCACGAGTCGTG
CAGCAGGCACGGCAGCTTCTCGGGCGAGGCGTGCGTCTACAAGGAGGGGC
AGGTGCACGCTGAGTGGTGAGTATTCATGTTTGTACTTTTCATTAATTCT
CGCTCAGGGCGCAAAAAAGCCGGGATGAACGGTCGTTATCCAAGCTTGCT
GTACGGTAGCTATATGTCGCGTGACAGTCTGAAAGTGTCTCAATGACAAA
CACATGTCTGTACTTCGAGTACTACTGATGCGTGTACAAGGAGGGGCAGG
TGCGCGCCGAGTGGTGAGTGTTCATTTTTGTACTTCAAGTACTGTTGATG
CGTGTACCAGGAGGGGGCAGGTGCACGCCGAGTGGTGAGTGTGCGGGCCT
GCACTTCAAGTTCTGTTGATATGGGAATTCTAATGTGGGGCCTGCGTCTG
AGGCGGTGCAGGTGCGCATCAAGTGGTCAGTATGCGTGCCTCTACTTCAA
GTACTGCTGATGTGGAAGTTTTGATGTGGGGCCTGCTTCTGGGGCCTGGC
AGATGCATTTGTTCCACACCAGTGTCGGGGGGAAGTGACCGCATCTCTGC
GCTGATACCACTCTGAAATGCTGGTTCACACGAATGCTGGGCTGGCAGGG
TGGCAGGGCACAACAAGCAGTTGCGTTGCTACATTGTATTGGATTACATC
AATTGGTACCTGGAAAGCTGACTCCAACCAACACTTCGATCAATGTCTAC
ATTTCTGATTGACTGAACGACTCTCACTGTTGAACTTTCCAACTTCATCA
TGTGCCTCAACGCTCAGCGACCAGCAGTACCGGGAGGCGCGCGCGCCCAA
GTGCGCTGCCTGCAGGAAGCCCGTCGTGGGGCAGTACTACCCTACCGGCA
GCGCCAGCGGCGGCAAGTGTCACGTGGAGTGCTGGGAGCGTTTCCAGCAC
GCGAACGCCACCAAGTAG

Coding sequence (CDS) from alignment at Contig_53:766826..771693+

>mRNA_8225 ID=mRNA_8225|Name=jgi.p|Trimin1|167768|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=810bp|location=Sequence derived from alignment at Contig_53:766826..771693+ (Tribonema minus UTEX_B_3156 )
ATGTTTGGTGGGAGACGAGGCTCTGCCAGCGCTGCGGCGACCTGCGGACA
TTGCGAGCAGACGATAGTGGCAGATGAAAAGCACAAGGGCACCTTCTTCA
CCATAACAGAGGCTGGAGCAGCTGGTAAAATCCACACGGAGTGCTGGGAG
GTGTATCAGGACCGCAACGCCGAAAAGTGCATGCACTGCAAGGGCCCGGT
GGCGCAGATTCCGGGCCGCTACAGCGGAAAGTTCTTTGCTCCGCCGGCGG
GCGGAAAGGTCCACGGAGAGTGCTGGGAGGCGTATAACCGCAAGGCAGAG
AGTGTGGAGCGCTGCGCAATGTGCGCCGAGCCTATCGCGGTGATGCCGGG
AAGGTTCAGCGGACAGTTCTTCGAGTTTGACAACGGCGACAAGATTCACG
GGGAGTGCAAGAAGGCCTACCATGCCACCAAGAGCGAGCGGTGTGCGCAC
TGTGATGAGCCTGTGGCGCCGGAGGCCGGAAAGTTCTCAGGCGAGTTCTT
TGTAGTGGAGGGAGACAGGCGCTGCCACGCCGAGTGCCACGCTGACTTCT
GCGCCAAGCGCGCGCCCAAGTGCCTCCAGTGCCACGAGTCGTGCAGCAGG
CACGGCAGCTTCTCGGGCGAGGCGTGCGTCTACAAGGAGGGGCAGGTGCA
CGCTGAGTGCGACCAGCAGTACCGGGAGGCGCGCGCGCCCAAGTGCGCTG
CCTGCAGGAAGCCCGTCGTGGGGCAGTACTACCCTACCGGCAGCGCCAGC
GGCGGCAAGTGTCACGTGGAGTGCTGGGAGCGTTTCCAGCACGCGAACGC
CACCAAGTAG