mRNA_8207 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|167718
Unique NamemRNA_8207
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|167718 vs. uniprot
Match: A0A835YPV2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPV2_9STRA)

HSP 1 Score: 145 bits (365), Expect = 1.020e-41
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 1 
Query:    1 MTTIGGPQASLLDTEDLGFGAAAEAQEKYNPPHNQAPSSQPVECMHGRNKYSCLECNKSRAXXXXXXXXXXXXXXKCVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLECMHGYSR 360
            MTTIGGPQASLLDTEDLGFGAAAEAQEKYNPPHNQAPSSQPVECMHGRNKYSCLECNKSRAXXXXXXXXXXXXXXKCVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLECMHGYSR
Sbjct:    1 MTTIGGPQASLLDTEDLGFGAAAEAQEKYNPPHNQAPSSQPVECMHGRNKYSCLECNKSRAXXXXXXXXXXXXXXKCVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLECMHGYSR 120
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|167718 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YPV2_9STRA1.020e-41100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_53contigContig_53:636277..636729 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|167718|e_gw1.53.28.1
Hectar predicted targeting categoryother localisation
TranscriptId168040
TrackFilteredModels1
ProteinId167718
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|167718gene_8207Tribonema minus UTEX_B_3156 geneContig_53 636277..636729 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_8207_1exon_8207_1Tribonema minus UTEX_B_3156 exonContig_53 636277..636729 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_8207CDS_8207Tribonema minus UTEX_B_3156 CDSContig_53 636277..636729 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|167718Trimin1|167718|e_gw1.53.28.1Tribonema minus UTEX_B_3156 polypeptideContig_53 636277..636729 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_8207 ID=mRNA_8207|Name=jgi.p|Trimin1|167718|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=453bp|location=Sequence derived from alignment at Contig_53:636277..636729- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGACCACCATAGGAGGCCCTCAGGCGTCATTGCTCGACACCGAAGATCT
GGGTTTTGGGGCAGCTGCAGAGGCTCAGGAGAAGTACAACCCCCCCCACA
ATCAAGCGCCTAGCAGTCAGCCAGTCGAATGCATGCACGGTAGGAACAAG
TACAGCTGCCTTGAGTGCAACAAAAGCCGCGCCTGCGTGCACGGTGGGGA
CAAGCACCACTGCCGTGAGTGCAACAAATGCGTGCCGCACGGCAGGTTCA
AGTACGAGTGCCTTGAGTGCAACAAAAGCCGCGCCTGCGTGCACGGTCAG
GACAAGCACCACTGCCGTGAGTGCAACAAAAGCCTCGAATGCATGCACGG
CTACAGCAGGAAGTACGACTGCCTTGAGTGCAACAAACGCCGCGCCTGCG
TGCACGGTCGGGACAAGTACAAATGCCGTGAGTGCAAAGAAAGCCGTAAC
TGA
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protein sequence of jgi.p|Trimin1|167718

>Trimin1|167718|e_gw1.53.28.1 ID=Trimin1|167718|e_gw1.53.28.1|Name=jgi.p|Trimin1|167718|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=151bp
MTTIGGPQASLLDTEDLGFGAAAEAQEKYNPPHNQAPSSQPVECMHGRNK
YSCLECNKSRACVHGGDKHHCRECNKCVPHGRFKYECLECNKSRACVHGQ
DKHHCRECNKSLECMHGYSRKYDCLECNKRRACVHGRDKYKCRECKESRN
*
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mRNA from alignment at Contig_53:636277..636729-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8207 ID=mRNA_8207|Name=jgi.p|Trimin1|167718|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=453bp|location=Sequence derived from alignment at Contig_53:636277..636729- (Tribonema minus UTEX_B_3156 )
ATGACCACCATAGGAGGCCCTCAGGCGTCATTGCTCGACACCGAAGATCT
GGGTTTTGGGGCAGCTGCAGAGGCTCAGGAGAAGTACAACCCCCCCCACA
ATCAAGCGCCTAGCAGTCAGCCAGTCGAATGCATGCACGGTAGGAACAAG
TACAGCTGCCTTGAGTGCAACAAAAGCCGCGCCTGCGTGCACGGTGGGGA
CAAGCACCACTGCCGTGAGTGCAACAAATGCGTGCCGCACGGCAGGTTCA
AGTACGAGTGCCTTGAGTGCAACAAAAGCCGCGCCTGCGTGCACGGTCAG
GACAAGCACCACTGCCGTGAGTGCAACAAAAGCCTCGAATGCATGCACGG
CTACAGCAGGAAGTACGACTGCCTTGAGTGCAACAAACGCCGCGCCTGCG
TGCACGGTCGGGACAAGTACAAATGCCGTGAGTGCAAAGAAAGCCGTAAC
TGA
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Coding sequence (CDS) from alignment at Contig_53:636277..636729-

>mRNA_8207 ID=mRNA_8207|Name=jgi.p|Trimin1|167718|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=453bp|location=Sequence derived from alignment at Contig_53:636277..636729- (Tribonema minus UTEX_B_3156 )
ATGACCACCATAGGAGGCCCTCAGGCGTCATTGCTCGACACCGAAGATCT
GGGTTTTGGGGCAGCTGCAGAGGCTCAGGAGAAGTACAACCCCCCCCACA
ATCAAGCGCCTAGCAGTCAGCCAGTCGAATGCATGCACGGTAGGAACAAG
TACAGCTGCCTTGAGTGCAACAAAAGCCGCGCCTGCGTGCACGGTGGGGA
CAAGCACCACTGCCGTGAGTGCAACAAATGCGTGCCGCACGGCAGGTTCA
AGTACGAGTGCCTTGAGTGCAACAAAAGCCGCGCCTGCGTGCACGGTCAG
GACAAGCACCACTGCCGTGAGTGCAACAAAAGCCTCGAATGCATGCACGG
CTACAGCAGGAAGTACGACTGCCTTGAGTGCAACAAACGCCGCGCCTGCG
TGCACGGTCGGGACAAGTACAAATGCCGTGAGTGCAAAGAAAGCCGTAAC
TGA
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