mRNA_18994 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|354739
Unique NamemRNA_18994
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|354739 vs. uniprot
Match: A0A835YVD0_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVD0_9STRA)

HSP 1 Score: 142 bits (359), Expect = 5.030e-41
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 2 
Query:  140 MLSFPLVAQMLSKCCYACSDCCLACQITRTICGGSCSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCKKRSPFRCPHCRLSARFAARWDHSRRCRTACRLTRRA 493
            MLSFPLVAQMLSKCCYACSDCCLACQITRTICGGSCSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCKKRSPFRCPHCRLSARFAARWDHSRRCRTACRLTRRA
Sbjct:    1 MLSFPLVAQMLSKCCYACSDCCLACQITRTICGGSCSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCKKRSPFRCPHCRLSARFAARWDHSRRCRTACRLTRRA 118
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|354739 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YVD0_9STRA5.030e-41100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_529contigContig_529:5057..6474 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|354739|estExt_Genemark1.C_Ctg_5290002
Hectar predicted targeting categorysignal peptide
TranscriptId355061
TrackFilteredModels1
ProteinId354739
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|354739gene_18994Tribonema minus UTEX_B_3156 geneContig_529 5057..6474 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|354739Trimin1|354739|estExt_Genemark1.C_Ctg_5290002Tribonema minus UTEX_B_3156 polypeptideContig_529 5059..6335 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_18994_3exon_18994_3Tribonema minus UTEX_B_3156 exonContig_529 5057..5098 -
exon_18994_2exon_18994_2Tribonema minus UTEX_B_3156 exonContig_529 5227..5433 -
exon_18994_1exon_18994_1Tribonema minus UTEX_B_3156 exonContig_529 6229..6474 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_18994UTR3_18994Tribonema minus UTEX_B_3156 three_prime_UTRContig_529 5057..5058 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_18994CDS_18994Tribonema minus UTEX_B_3156 CDSContig_529 6229..6335 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_18994UTR5_18994Tribonema minus UTEX_B_3156 five_prime_UTRContig_529 6336..6474 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_18994 ID=mRNA_18994|Name=jgi.p|Trimin1|354739|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=495bp|location=Sequence derived from alignment at Contig_529:5057..6474- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GCCGGGTGGACTGCAGGCAATGGACTCAGCAAGATCTTGCGCTTCTGCGC
ATGTATCAGCGACCAGTCACGATCCAATGGTGAGGCAGCATGACTACTCT
CCTCTTGCGCCCCGGATTGTGTGATACATTCATGTAGCAATGCTCAGCTT
CCCTCTCGTGGCGCAGATGTTGTCTAAGTGCTGCTATGCCTGTAGTGACT
GCTGCCTGGCATGCCAGATCACGCGAACGATTTGTGGCGGTTCCTGCAGC
AGCAGCGCCAGCAGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACCGCCGCCGC
CACCGCAGCAGCAGCAGCAGCAGCGCCGATGCAAGAAGCGCTCACCCTTT
CGCTGCCCTCACTGCAGACTCTCAGCGCGCTTTGCAGCTCGCTGGGACCA
CAGCCGTCGTTGCCGCACCGCCTGCCGGTTGACCCGCAGGGCTGA
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protein sequence of jgi.p|Trimin1|354739

>Trimin1|354739|estExt_Genemark1.C_Ctg_5290002 ID=Trimin1|354739|estExt_Genemark1.C_Ctg_5290002|Name=jgi.p|Trimin1|354739|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=118bp
MLSFPLVAQMLSKCCYACSDCCLACQITRTICGGSCSSSASRQQQQQQQQ
QQQQQQQQQQQQQQQQQPPPPPQQQQQQRRCKKRSPFRCPHCRLSARFAA
RWDHSRRCRTACRLTRRA
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mRNA from alignment at Contig_529:5057..6474-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_18994 ID=mRNA_18994|Name=jgi.p|Trimin1|354739|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1418bp|location=Sequence derived from alignment at Contig_529:5057..6474- (Tribonema minus UTEX_B_3156 )
GCCGGGTGGACTGCAGGCAATGGACTCAGCAAGATCTTGCGCTTCTGCGC
ATGTATCAGCGACCAGTCACGATCCAATGGTGAGGCAGCATGACTACTCT
CCTCTTGCGCCCCGGATTGTGTGATACATTCATGTAGCAATGCTCAGCTT
CCCTCTCGTGGCGCAGATGTTGTCTAAGTGCTGCTATGCCTGTAGTGACT
GCTGCCTGGCATGCCAGATCACGCGAACGATTTGTGGCGGTTCCTGGTAC
GGATGATGTTGCCATGCACATTGACGCAGACAATGCTGTCATTGCCGGTG
CTCAACGCAGACAATGCTGTCATTGTATGTGCTGGCATGTGTACGATTCG
AAGCGTACTTGCCAAAGCCAGCATCACCGGGCCTAAATAAGTGGTATAGA
AGCATACTGAGCATCGCTGTTTGTCTCGGGTATGAGTACGGGCGCACCAG
CTTTGTAGGCATAGCTGTTGAAGTTGAAGTTACTATGATGGCTCTCGTCA
CGGCGCAGCCTGCATGGTGCCCAGCCAAAGCGGCTTGTTGACACGTGCAC
CCTAACCTCAACCCTAAGCTCGCAGCACGTCCCTGCGACTGGGGCAGCAG
CGTGCAACGCCGCGTGTGCACTGCTGGCAGTGACTGGCACCGCCCCCACT
GTGACGATGACACAGCATTGCGCAATGATCAGTAAGCTGTGACAGTGACT
GTCACCGCCCTCACCGCCATGATGAAAAATCTTTGCACAGTGACCAGTAA
GCTGAGGCTGAGTGTTGATGCAGCTGCACGCTGAGCACTGGGCACAGCAC
CGCAGTGTGAGCACTGTCACTGTTGCTTGGGCGCTGCCACAGCGGCGGCC
CTGCTGAGCTATGAACACGGAATCACAACTGTGACCGGTGATGCCGTCAG
CAGCTGCTGAGAGGTGTGCTTGGTGAACCTGAGCGCTGTCCCATGCTGTG
CACCGCGCACCGCGCCTGCTTGTTCGCATCAGTGACGCGGGTGCGTGCGC
CACCGCAAAGCGTGGCGCAGCCGCCGCCGCCGCCGCCGCAGCAGCAGCAG
CGCCAGCAGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACCGCCGCCGCCACCG
CAGCAGCAGCAGCAGCAGCGCCGATGCAAGAAGCGCTCACCCTTTCGCTG
CCCTCACTGCAGACTCTCAGCGCGCTTTGCAGCTCGCTGGGACCACAGGT
GCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGTTGCTGCTGGACC
GCTGGTGCACATGAGACCGACCTAACAGAGCTGCTGAGCACTGCATGCCG
CCCTCTCTCTGTCCTCTTGCTCGCAGCCGTCGTTGCCGCACCGCCTGCCG
GTTGACCCGCAGGGCTGA
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Coding sequence (CDS) from alignment at Contig_529:5057..6474-

>mRNA_18994 ID=mRNA_18994|Name=jgi.p|Trimin1|354739|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=354bp|location=Sequence derived from alignment at Contig_529:5057..6474- (Tribonema minus UTEX_B_3156 )
ATGCTCAGCTTCCCTCTCGTGGCGCAGATGTTGTCTAAGTGCTGCTATGC
CTGTAGTGACTGCTGCCTGGCATGCCAGATCACGCGAACGATTTGTGGCG
GTTCCTGCAGCAGCAGCGCCAGCAGGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
ACCGCCGCCGCCACCGCAGCAGCAGCAGCAGCAGCGCCGATGCAAGAAGC
GCTCACCCTTTCGCTGCCCTCACTGCAGACTCTCAGCGCGCTTTGCAGCT
CGCTGGGACCACAGCCGTCGTTGCCGCACCGCCTGCCGGTTGACCCGCAG
GGCT
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