Trimin1|349953|estExt_Genemark1.C_Ctg_520048 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|349953
Unique Name	Trimin1\|349953\|estExt_Genemark1.C_Ctg_520048
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	1279

Homology

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BLAST of jgi.p|Trimin1|349953 vs. uniprot
Match: A0A835YQ05_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ05_9STRA)

HSP 1 Score: 1353 bits (3503), Expect = 0.000e+0
Identity = 879/879 (100.00%), Postives = 879/879 (100.00%), Query Frame = 0

Query:    1 MADSNCMNGVQAAGAGAWSPLAWTNGTSFAARGAQXXXXXXXXXXXXXXXXXXXXAKRRVSEGDAKCGSLLSELTKVRARRDALERESLASDAARAQAQESXXXXXXEARAARSAAEXXXXXXXXXXKALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRERITALDAALSAAKREARDAKEEASCCHPRKPHSPETALTRVLSARRAAAAAAQRADGVRAQCSARVRAAQEQAERAXXXXXXGARACAVTKQVATDLDQPPRLSAQLAVVTQERDQLRWDLAVSKRQKQQQQQRPDQSPCRRLQPDNGSVFGLQPPQMVAGAAEAGRSGPMASSVDDLQIDFVRLLATTERLGEHVQPIAPAAGDGIVRGEFVGAATWQLPEGEPWKAYKARLRFAQYLVALREMLPQLEAAADAAPATFDRDACCCPTALEEDEGPLTLQDSLKFQRRIAPVAPPVRIATADKGSSARCSPVALALYGQRVGALRRRLEELVKQETTPQGLSEQALPAAAXXXXXXXXXXXXXXATPGAVSVSHDGHSASAQHSSGSVTQRKAFGFPQRPVGRGGAAGRGPSRGTSPKPRAGVGRGRGGEQGRRAAEAAAADISDLASQLKLSATEVRFLAEQRCDAPLRALRARPGCRAAGEARSCRSSASVDLVNASSMSPHSAGGDYLAGDGSAAADVTPGGCRSNLRRHMEINRTLKTQTALLEDTETVAAKNLSKVMREAERVAVQLRKKRRATCASCTVILTVLLTFMATYAFVIKAFSKRRSIFEIVKSRRQRARRSPSVQQNAAAAGTVLDLEAACALDAQQCSTTTALDSIKVDQERASAAAAAPAEAPLGDAPESDRDGDRAAV 879
            MADSNCMNGVQAAGAGAWSPLAWTNGTSFAARGAQXXXXXXXXXXXXXXXXXXXXAKRRVSEGDAKCGSLLSELTKVRARRDALERESLASDAARAQAQESXXXXXXEARAARSAAEXXXXXXXXXXKALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRERITALDAALSAAKREARDAKEEASCCHPRKPHSPETALTRVLSARRAAAAAAQRADGVRAQCSARVRAAQEQAERAXXXXXXGARACAVTKQVATDLDQPPRLSAQLAVVTQERDQLRWDLAVSKRQKQQQQQRPDQSPCRRLQPDNGSVFGLQPPQMVAGAAEAGRSGPMASSVDDLQIDFVRLLATTERLGEHVQPIAPAAGDGIVRGEFVGAATWQLPEGEPWKAYKARLRFAQYLVALREMLPQLEAAADAAPATFDRDACCCPTALEEDEGPLTLQDSLKFQRRIAPVAPPVRIATADKGSSARCSPVALALYGQRVGALRRRLEELVKQETTPQGLSEQALPAAAXXXXXXXXXXXXXXATPGAVSVSHDGHSASAQHSSGSVTQRKAFGFPQRPVGRGGAAGRGPSRGTSPKPRAGVGRGRGGEQGRRAAEAAAADISDLASQLKLSATEVRFLAEQRCDAPLRALRARPGCRAAGEARSCRSSASVDLVNASSMSPHSAGGDYLAGDGSAAADVTPGGCRSNLRRHMEINRTLKTQTALLEDTETVAAKNLSKVMREAERVAVQLRKKRRATCASCTVILTVLLTFMATYAFVIKAFSKRRSIFEIVKSRRQRARRSPSVQQNAAAAGTVLDLEAACALDAQQCSTTTALDSIKVDQERASAAAAAPAEAPLGDAPESDRDGDRAAV
Sbjct:    1 MADSNCMNGVQAAGAGAWSPLAWTNGTSFAARGAQXXXXXXXXXXXXXXXXXXXXAKRRVSEGDAKCGSLLSELTKVRARRDALERESLASDAARAQAQESXXXXXXEARAARSAAEXXXXXXXXXXKALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRERITALDAALSAAKREARDAKEEASCCHPRKPHSPETALTRVLSARRAAAAAAQRADGVRAQCSARVRAAQEQAERAXXXXXXGARACAVTKQVATDLDQPPRLSAQLAVVTQERDQLRWDLAVSKRQKQQQQQRPDQSPCRRLQPDNGSVFGLQPPQMVAGAAEAGRSGPMASSVDDLQIDFVRLLATTERLGEHVQPIAPAAGDGIVRGEFVGAATWQLPEGEPWKAYKARLRFAQYLVALREMLPQLEAAADAAPATFDRDACCCPTALEEDEGPLTLQDSLKFQRRIAPVAPPVRIATADKGSSARCSPVALALYGQRVGALRRRLEELVKQETTPQGLSEQALPAAAXXXXXXXXXXXXXXATPGAVSVSHDGHSASAQHSSGSVTQRKAFGFPQRPVGRGGAAGRGPSRGTSPKPRAGVGRGRGGEQGRRAAEAAAADISDLASQLKLSATEVRFLAEQRCDAPLRALRARPGCRAAGEARSCRSSASVDLVNASSMSPHSAGGDYLAGDGSAAADVTPGGCRSNLRRHMEINRTLKTQTALLEDTETVAAKNLSKVMREAERVAVQLRKKRRATCASCTVILTVLLTFMATYAFVIKAFSKRRSIFEIVKSRRQRARRSPSVQQNAAAAGTVLDLEAACALDAQQCSTTTALDSIKVDQERASAAAAAPAEAPLGDAPESDRDGDRAAV 879

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BLAST of jgi.p|Trimin1|349953 vs. uniprot
Match: D7FHQ2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHQ2_ECTSI)

HSP 1 Score: 68.6 bits (166), Expect = 7.740e-8
Identity = 40/76 (52.63%), Postives = 53/76 (69.74%), Query Frame = 0

Query:  721 INRTLKTQTALLEDTETVAAKNLSKVMREAERVAVQLRKKRRATCASCTVILTVLLTFMATYAFVIKAFSKRRSIF 796
            IN+TL+TQT +LEDT   A +N+ +V RE  RV+ +LRKKR A  AS  +++TV++TF ATY  VI  F KRR  F
Sbjct:  214 INQTLRTQTQVLEDTGDAATQNVDRVKRENARVSERLRKKRAAMFASWCMMITVVVTFFATYFLVIVPFEKRRGPF 289

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|349953 vs. uniprot

BLAST of jgi.p|Trimin1|349953 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A835YQ05_9STRA	0.000e+0	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
D7FHQ2_ECTSI	7.740e-8	52.63	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 1026..1139
None	No IPR available	COILS	Coil	Coil	coord: 1147..1174
None	No IPR available	COILS	Coil	Coil	coord: 147..167
None	No IPR available	COILS	Coil	Coil	coord: 67..87
None	No IPR available	COILS	Coil	Coil	coord: 102..129
None	No IPR available	COILS	Coil	Coil	coord: 880..991
None	No IPR available	COILS	Coil	Coil	coord: 740..760
None	No IPR available	COILS	Coil	Coil	coord: 1247..1267
None	No IPR available	COILS	Coil	Coil	coord: 243..270
None	No IPR available	COILS	Coil	Coil	coord: 179..206
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 890..905
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 306..350
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1071..1108
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 853..877
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 968..982
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 558..577
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 890..1278
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 307..328
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 520..622
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1244..1278
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 909..940
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1001..1022

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_52	contig	Contig_52:378544..395509 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|349953	mRNA_9944	Tribonema minus UTEX_B_3156	mRNA	Contig_52 378381..395509 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|349953|estExt_Genemark1.C_Ctg_520048 ID=Trimin1|349953|estExt_Genemark1.C_Ctg_520048|Name=jgi.p|Trimin1|349953|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=1279bp
MADSNCMNGVQAAGAGAWSPLAWTNGTSFAARGAQGSAAAAEAADALAAA
RRAREAKRRVSEGDAKCGSLLSELTKVRARRDALERESLASDAARAQAQE
SAAAAAAEARAARSAAEAARSEAERLRKALSAALDGARTAHEAHAARAEA
EGQLAAALRRCADAKHAAKAAAAERAREVAAQRERITALDAALSAAKREA
RDAKEEASCCHPRKPHSPETALTRVLSARRAAAAAAQRADGVRAQCSARV
RAAQEQAERAEAEAEAGARACAVTKQVATDLDQPPRLSAQLAVVTQERDQ
LRWDLAVSKRQKQQQQQRPDQSPCRRLQPDNGSVFGLQPPQMVAGAAEAG
RSGPMASSVDDLQIDFVRLLATTERLGEHVQPIAPAAGDGIVRGEFVGAA
TWQLPEGEPWKAYKARLRFAQYLVALREMLPQLEAAADAAPATFDRDACC
CPTALEEDEGPLTLQDSLKFQRRIAPVAPPVRIATADKGSSARCSPVALA
LYGQRVGALRRRLEELVKQETTPQGLSEQALPAAAAAAERPPQSLAAAAA
TPGAVSVSHDGHSASAQHSSGSVTQRKAFGFPQRPVGRGGAAGRGPSRGT
SPKPRAGVGRGRGGEQGRRAAEAAAADISDLASQLKLSATEVRFLAEQRC
DAPLRALRARPGCRAAGEARSCRSSASVDLVNASSMSPHSAGGDYLAGDG
SAAADVTPGGCRSNLRRHMEINRTLKTQTALLEDTETVAAKNLSKVMREA
ERVAVQLRKKRRATCASCTVILTVLLTFMATYAFVIKAFSKRRSIFEIVK
SRRQRARRSPSVQQNAAAAGTVLDLEAACALDAQQCSTTTALDSIKVDQE
RASAAAAAPAEAPLGDAPESDRDGDRAAVAAAAAEAVARMQQQQQQQQQQ
LEQEQHAAAAAAEVKREERQQLQLEQQREEEERVAAQEAARAAEEQRAAA
EAAAAAAATAAARAAAAEAQRQQQQEQLRRQQQEAAAAADAAAARAAEAA
RAAEEAAHWAAEEDRRQQKAREESAAAAAAAEAAAARARVAEAQRQRQQQ
QEEEVQAKLAAAAAAAAAAEEERARQQEAAAEAAREREAEAMRRQQQQER
EKAEAAAAEAAARDAAAALEREARQQQQQQQQREKAAAAAAAAADEAARQ
QEAAAAAASKAAEVEAQLQKEKQQQAITAAASAAAAAAAAEAAAALEKQQ
RLVAAADANPPFPPPLTPASNDAAKTGAPAAPPAAGGASSGRGSDRLKKL
REARAAMQAKLGREAEEERRRGAGADEL*