Trimin1|349945|estExt_Genemark1.C_Ctg_520029 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|349945
Unique Name	Trimin1\|349945\|estExt_Genemark1.C_Ctg_520029
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	325

Homology

[Close]

BLAST of jgi.p|Trimin1|349945 vs. uniprot
Match: A0A835YTP5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTP5_9STRA)

HSP 1 Score: 519 bits (1336), Expect = 6.670e-184
Identity = 324/324 (100.00%), Postives = 324/324 (100.00%), Query Frame = 0

Query:    1 MRRAARACGAAAALVALDPCAAFICSSGRPVTKSSECKLTCTTIRAGMRRPWSATVAIRSSATDAAEGTDDIVXXXXXXXXXXXXDIDLTDDEDVASIRLRLLRQSPGNDGSDPLENVVLEEDSEXXXXXXXXXXXXXXXXXXXXXQMAQLAEKLRDTMMLRAQESGENTLSSFLDDELNRGEEELRSLAQDLVSKDGAPGEQFFAEAFSSAYEEQTEKMLGQYESKAGKIMQRVEREKANLEREVENMKDLQASVEKDWVFQLQSFPTKGVVKQSALVSAILLANQAAYQALLIVERRGGEPVTAALELALVAAALYFYGLRL 324
            MRRAARACGAAAALVALDPCAAFICSSGRPVTKSSECKLTCTTIRAGMRRPWSATVAIRSSATDAAEGTDDIVXXXXXXXXXXXXDIDLTDDEDVASIRLRLLRQSPGNDGSDPLENVVLEEDSEXXXXXXXXXXXXXXXXXXXXXQMAQLAEKLRDTMMLRAQESGENTLSSFLDDELNRGEEELRSLAQDLVSKDGAPGEQFFAEAFSSAYEEQTEKMLGQYESKAGKIMQRVEREKANLEREVENMKDLQASVEKDWVFQLQSFPTKGVVKQSALVSAILLANQAAYQALLIVERRGGEPVTAALELALVAAALYFYGLRL
Sbjct:    1 MRRAARACGAAAALVALDPCAAFICSSGRPVTKSSECKLTCTTIRAGMRRPWSATVAIRSSATDAAEGTDDIVXXXXXXXXXXXXDIDLTDDEDVASIRLRLLRQSPGNDGSDPLENVVLEEDSEXXXXXXXXXXXXXXXXXXXXXQMAQLAEKLRDTMMLRAQESGENTLSSFLDDELNRGEEELRSLAQDLVSKDGAPGEQFFAEAFSSAYEEQTEKMLGQYESKAGKIMQRVEREKANLEREVENMKDLQASVEKDWVFQLQSFPTKGVVKQSALVSAILLANQAAYQALLIVERRGGEPVTAALELALVAAALYFYGLRL 324

[Close]

BLAST of jgi.p|Trimin1|349945 vs. uniprot
Match: D7FYV8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYV8_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 1.130e-13
Identity = 51/154 (33.12%), Postives = 85/154 (55.19%), Query Frame = 0

Query:  171 LSSFLDDELNRGEEELRSLAQDLVSKDGAPG-EQFFAEAFSSAYEEQTEKMLGQYESKAGKIMQRVEREKANLEREVENMKDLQASVEKDWVFQLQSFPTKGVVKQSALVSAILLANQAAYQALLIVERRGGEPVTAALELALVAAALYFYGLR 323
            L+ F D+E  +G   LR LA++L + +GA       A+  +   + + +K   + E +   +  ++++        V   ++ +   E D+V QL SF  KGV++Q+A V A+L+ANQA YQA+L+ + RGG P  A   LA  AA +++YG R
Sbjct:  193 LAKFFDEEFEKGTSALRELAEELKTDEGAVSYADRMAQELAELLQVEEDKAAAEIERRQAPVKAKLDKATXXXXXXVAAAEEARREFEGDFVLQLMSFRQKGVLRQAAFVGAVLIANQAVYQAILVADDRGGNPAFALGGLAASAALVWYYGYR 346

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|349945 vs. uniprot

BLAST of jgi.p|Trimin1|349945 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A835YTP5_9STRA	6.670e-184	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
D7FYV8_ECTSI	1.130e-13	33.12	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 225..259
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 103..138

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_52	contig	Contig_52:243061..247375 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|349945	mRNA_9929	Tribonema minus UTEX_B_3156	mRNA	Contig_52 243051..247375 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|349945|estExt_Genemark1.C_Ctg_520029 ID=Trimin1|349945|estExt_Genemark1.C_Ctg_520029|Name=jgi.p|Trimin1|349945|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=325bp
MRRAARACGAAAALVALDPCAAFICSSGRPVTKSSECKLTCTTIRAGMRR
PWSATVAIRSSATDAAEGTDDIVSSATDAAEGTADDIDLTDDEDVASIRL
RLLRQSPGNDGSDPLENVVLEEDSEQSPRNDGSDPLENVVLEEDSKQMAQ
LAEKLRDTMMLRAQESGENTLSSFLDDELNRGEEELRSLAQDLVSKDGAP
GEQFFAEAFSSAYEEQTEKMLGQYESKAGKIMQRVEREKANLEREVENMK
DLQASVEKDWVFQLQSFPTKGVVKQSALVSAILLANQAAYQALLIVERRG
GEPVTAALELALVAAALYFYGLRL*