mRNA_9929 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|349945
Unique Name	mRNA_9929
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|349945 vs. uniprot
Match: A0A835YTP5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTP5_9STRA)

HSP 1 Score: 518 bits (1335), Expect = 1.070e-183
Identity = 324/324 (100.00%), Postives = 324/324 (100.00%), Query Frame = 2

Query:   11 MRRAARACGAAAALVALDPCAAFICSSGRPVTKSSECKLTCTTIRAGMRRPWSATVAIRSSATDAAEGTDDIVXXXXXXXXXXXXDIDLTDDEDVASIRLRLLRQSPGNDGSDPLENVVLEEDSEXXXXXXXXXXXXXXXXXXXXXQMAQLAEKLRDTMMLRAQESGENTLSSFLDDELNRGEEELRSLAQDLVSKDGAPGEQFFAEAFSSAYEEQTEKMLGQYESKAGKIMQRVEREKANLEREVENMKDLQASVEKDWVFQLQSFPTKGVVKQSALVSAILLANQAAYQALLIVERRGGEPVTAALELALVAAALYFYGLRL 982
            MRRAARACGAAAALVALDPCAAFICSSGRPVTKSSECKLTCTTIRAGMRRPWSATVAIRSSATDAAEGTDDIVXXXXXXXXXXXXDIDLTDDEDVASIRLRLLRQSPGNDGSDPLENVVLEEDSEXXXXXXXXXXXXXXXXXXXXXQMAQLAEKLRDTMMLRAQESGENTLSSFLDDELNRGEEELRSLAQDLVSKDGAPGEQFFAEAFSSAYEEQTEKMLGQYESKAGKIMQRVEREKANLEREVENMKDLQASVEKDWVFQLQSFPTKGVVKQSALVSAILLANQAAYQALLIVERRGGEPVTAALELALVAAALYFYGLRL
Sbjct:    1 MRRAARACGAAAALVALDPCAAFICSSGRPVTKSSECKLTCTTIRAGMRRPWSATVAIRSSATDAAEGTDDIVXXXXXXXXXXXXDIDLTDDEDVASIRLRLLRQSPGNDGSDPLENVVLEEDSEXXXXXXXXXXXXXXXXXXXXXQMAQLAEKLRDTMMLRAQESGENTLSSFLDDELNRGEEELRSLAQDLVSKDGAPGEQFFAEAFSSAYEEQTEKMLGQYESKAGKIMQRVEREKANLEREVENMKDLQASVEKDWVFQLQSFPTKGVVKQSALVSAILLANQAAYQALLIVERRGGEPVTAALELALVAAALYFYGLRL 324

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BLAST of jgi.p|Trimin1|349945 vs. uniprot
Match: D7FYV8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYV8_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 1.180e-13
Identity = 51/154 (33.12%), Postives = 85/154 (55.19%), Query Frame = 2

Query:  521 LSSFLDDELNRGEEELRSLAQDLVSKDGAPG-EQFFAEAFSSAYEEQTEKMLGQYESKAGKIMQRVEREKANLEREVENMKDLQASVEKDWVFQLQSFPTKGVVKQSALVSAILLANQAAYQALLIVERRGGEPVTAALELALVAAALYFYGLR 979
            L+ F D+E  +G   LR LA++L + +GA       A+  +   + + +K   + E +   +  ++++        V   ++ +   E D+V QL SF  KGV++Q+A V A+L+ANQA YQA+L+ + RGG P  A   LA  AA +++YG R
Sbjct:  193 LAKFFDEEFEKGTSALRELAEELKTDEGAVSYADRMAQELAELLQVEEDKAAAEIERRQAPVKAKLDKATXXXXXXVAAAEEARREFEGDFVLQLMSFRQKGVLRQAAFVGAVLIANQAVYQAILVADDRGGNPAFALGGLAASAALVWYYGYR 346

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|349945 vs. uniprot

BLAST of jgi.p|Trimin1|349945 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A835YTP5_9STRA	1.070e-183	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
D7FYV8_ECTSI	1.180e-13	33.12	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_52	contig	Contig_52:243051..247375 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|349945\|estExt_Genemark1.C_Ctg_520029
Max annot lvl	2836\|Bacillariophyta
EggNOG OGs	2CDVN@1\|root,2STPD@2759\|Eukaryota,2XDXM@2836\|Bacillariophyta
Evalue	0.000884
Seed ortholog	2850.Phatr46468
Hectar predicted targeting category	chloroplast
TranscriptId	350267
Track	FilteredModels1
ProteinId	349945

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|349945	gene_9929	Tribonema minus UTEX_B_3156	gene	Contig_52 243051..247375 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|349945	Trimin1\|349945\|estExt_Genemark1.C_Ctg_520029	Tribonema minus UTEX_B_3156	polypeptide	Contig_52 243061..247375 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_9929_1	exon_9929_1	Tribonema minus UTEX_B_3156	exon	Contig_52 243051..243236 +
exon_9929_2	exon_9929_2	Tribonema minus UTEX_B_3156	exon	Contig_52 243788..243829 +
exon_9929_3	exon_9929_3	Tribonema minus UTEX_B_3156	exon	Contig_52 244047..244206 +
exon_9929_4	exon_9929_4	Tribonema minus UTEX_B_3156	exon	Contig_52 244299..244361 +
exon_9929_5	exon_9929_5	Tribonema minus UTEX_B_3156	exon	Contig_52 244800..244987 +
exon_9929_6	exon_9929_6	Tribonema minus UTEX_B_3156	exon	Contig_52 245723..245810 +
exon_9929_7	exon_9929_7	Tribonema minus UTEX_B_3156	exon	Contig_52 246608..246751 +
exon_9929_8	exon_9929_8	Tribonema minus UTEX_B_3156	exon	Contig_52 247262..247375 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR5_9929	UTR5_9929	Tribonema minus UTEX_B_3156	five_prime_UTR	Contig_52 243051..243060 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_9929	CDS_9929	Tribonema minus UTEX_B_3156	CDS	Contig_52 243061..243236 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_52:243051..247375+
coding sequence from alignment at Contig_52:243051..247375+

spliced messenger RNA

>mRNA_9929 ID=mRNA_9929|Name=jgi.p|Trimin1|349945|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=985bp|location=Sequence derived from alignment at Contig_52:243051..247375+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CGAGACGGCAATGCGACGAGCGGCGAGGGCGTGTGGAGCGGCTGCTGCCC
TGGTGGCACTCGATCCCTGCGCGGCTTTTATATGCAGCAGCGGGCGGCCT
GTGACCAAGTCCAGCGAGTGCAAGTTGACATGCACAACCATCAGGGCAGG
CATGAGGCGACCTTGGAGCGCTACTGTGGCAATCAGGTCCAGCGCCACGG
ACGCGGCGGAGGGCACGGACGACATCGTGTCCAGCGCCACGGACGCGGCG
GAGGGCACGGCGGACGACATTGACCTCACCGACGACGAGGACGTGGCCAG
CATACGCCTGCGCCTGCTGCGCCAGTCGCCCGGCAACGACGGCTCTGACC
CCCTGGAGAACGTCGTCCTGGAGGAGGACAGCGAGCAGTCGCCCCGCAAC
GACGGCTCCGACCCCCTGGAGAACGTCGTGCTGGAGGAGGACAGCAAGCA
GATGGCGCAGCTGGCGGAGAAGCTGCGCGACACCATGATGCTGCGCGCAC
AGGAGAGCGGCGAGAACACGCTGAGCAGCTTCCTGGACGATGAGCTCAAT
CGCGGCGAGGAGGAGCTGCGCTCGCTCGCGCAGGACCTCGTGTCGAAAGA
CGGGGCACCCGGGGAGCAGTTTTTTGCTGAGGCGTTCAGCTCCGCGTACG
AGGAGCAGACGGAGAAGATGCTGGGCCAGTATGAGTCCAAGGCGGGGAAG
ATCATGCAGCGCGTGGAGAGGGAGAAGGCCAACCTGGAGCGAGAGGTGGA
GAACATGAAGGACCTCCAGGCGAGCGTGGAGAAGGACTGGGTCTTCCAGC
TGCAGTCGTTCCCTACCAAGGGCGTCGTGAAGCAGAGCGCGCTCGTCTCG
GCGATACTGCTGGCCAACCAGGCCGCGTACCAGGCGCTTCTGATTGTGGA
GCGGCGCGGCGGCGAGCCCGTCACGGCGGCGCTTGAGCTGGCGCTGGTGG
CGGCAGCGCTCTACTTCTACGGCCTGCGCTTGTAG

protein sequence of jgi.p|Trimin1|349945

>Trimin1|349945|estExt_Genemark1.C_Ctg_520029 ID=Trimin1|349945|estExt_Genemark1.C_Ctg_520029|Name=jgi.p|Trimin1|349945|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=325bp
MRRAARACGAAAALVALDPCAAFICSSGRPVTKSSECKLTCTTIRAGMRR
PWSATVAIRSSATDAAEGTDDIVSSATDAAEGTADDIDLTDDEDVASIRL
RLLRQSPGNDGSDPLENVVLEEDSEQSPRNDGSDPLENVVLEEDSKQMAQ
LAEKLRDTMMLRAQESGENTLSSFLDDELNRGEEELRSLAQDLVSKDGAP
GEQFFAEAFSSAYEEQTEKMLGQYESKAGKIMQRVEREKANLEREVENMK
DLQASVEKDWVFQLQSFPTKGVVKQSALVSAILLANQAAYQALLIVERRG
GEPVTAALELALVAAALYFYGLRL*

mRNA from alignment at Contig_52:243051..247375+

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9929 ID=mRNA_9929|Name=jgi.p|Trimin1|349945|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4325bp|location=Sequence derived from alignment at Contig_52:243051..247375+ (Tribonema minus UTEX_B_3156 )
CGAGACGGCAATGCGACGAGCGGCGAGGGCGTGTGGAGCGGCTGCTGCCC
TGGTGGCACTCGATCCCTGCGCGGCTTTTATATGCAGCAGCGGGCGGCCT
GTGACCAAGTCCAGCGAGTGCAAGTTGACATGCACAACCATCAGGGCAGG
CATGAGGCGACCTTGGAGCGCTACTGTGGCAATCAGGTGCGTGTGAGCAA
TTGAACTTCTTATCGTTTTCAACGTGGTACGTATTGAAATGCTTGGCGGC
CGAGATTTTCTTTCGTGCAGTCGAGATTTTCTTGGAGGAGCATGATGAGG
TTGTGGGAATCTTCATTCTTGGGCTACGCCGTCCTCCAAAACACAGGCCG
CGCATGTATACCGCCCGTTTGGAAGATTTGCGTCCGATCGCACGCTCTCT
CTGGGGCGGTGCATTCAAGTCGCGCTGCGAATCAGGCCCTAGCGCTCGCT
GCCCAAGAAATGCATTTAGCCTTGGCAAACACATCGCTTTCTGTGGCGAC
GTTATGCGGTGCAATGACATTGTGAAGCGATTGGGTCTGGCACTCTAGTG
CTTGAGGTAGTATGGAGCTTGTAGTACACTGATGATGTCCTGCAGATGAT
TATGTCCTGGTGATAAAGCGCAAGTTGTAGGCACCGCCCAGGGTAATCCG
ACACCGCAACGATCAACGCTCCGCATGCAATGAGAGCTCCTCTTTCGGGG
TCGTGAATAGTCTGAGCGTCGCTGCATCGGCGTGCAGGTCCAGCGCCACG
GACGCGGCGGAGGGCACGGACGACATCGTGTCATGAATAACCTGAGCAGA
ATAAACTGCTTGTGTCATGAGTAAATGAACTGAGCATCGCTGCAGCGGCG
GTGCACAGGTCCAGCACCACAGACGCGACAGCGGGCACGGACGACATCGT
GTCATGGACAAGCTGAGCAGACTAAACTGATGTGTGTCATGAATAAACTC
AGTTTGAGCAGAATGAACCGAGCATCGCTGCATCGGCGGCGCACAGGTCC
AGCGCCACGGACGCGGCGGAGGGCACGGCGGACGACATTGACCTCACCGA
CGACGAGGACGTGGCCAGCATACGCCTGCGCCTGCTGCGCCAGTCGCCCG
GCAACGACGGCTCTGACCCCCTGGAGAACGTCGTCCTGGAGGAGGACAGC
GAGCAGGTGCGCTTTTCTCGACGCTTGATTCATATGTGCTACTGCTATTT
TTCAATCATCATAGAATGTATTGCAGTTGGCTGCGCCTGCTGCGCCAGTC
GCCCCGCAACGACGGCTCCGACCCCCTGGAGAACGTCGTGCTGGAGGAGG
ACAGCAAGCAGGTGCTTTGCTCTCGACGAACGTGCGCAGCCAGTCGTTCG
ACAATGACGGCTCCTGACCTCCGCAACAACATCACTCCACAGGAGGAATA
TTGGCAGGAACGCTATTTGCCACATCTCTGACTTGTGGGGGTCGTGTCTA
CAACTCAAAACTGTGACAAACTGTGACCAAGTACTGCCAGCATCAGGGCA
AGGTTGCCGCGGCAACAATCCAGCAGCGATGACGTGGATGCTACGAGTGC
AGTGAAGGAGAGCAGTCGCCGCGGCAACAATCCAGCAGCGATGACGTGGA
TGCTACAAGTGCAGTGAAGGAGAGCAGTCGCGGTTGGGCACACTACCGTG
ACCACCTCGCCCATGCATGATGGGGTTGAAGTTTGTCATCATGTTATAGC
CTGGCCCCGTCCCCAGCCCTCACACAGCCCCCCCCTGACACCATTGCAGA
TGGCGCAGCTGGCGGAGAAGCTGCGCGACACCATGATGCTGCGCGCACAG
GAGAGCGGCGAGAACACGCTGAGCAGCTTCCTGGACGATGAGCTCAATCG
CGGCGAGGAGGAGCTGCGCTCGCTCGCGCAGGACCTCGTGTCGAAAGACG
GGGCACCCGGGGAGCAGTTTTTTGCTGAGGCGTTCAGGTGAGGTCGTGTA
TCACTTCACCCGATAATGATTTGACCATGTGTTGGAGGTGTTGAGCGGGG
AGAATGGGGGCTGTGCTTGCTGGCGCAGGCCCTCGTGTCCAAGGACGGGG
GGGCTGGGGAGCAGTTCTTTGCTGAGGCATGCAGGCGACGTTGTTGTTGC
GCATTTTGTGAGGTCGCCGTCGCGCATCTCTTGTTTTCTGAAACTTCTTG
ACCTGACAATGACTTTCTATAAATACTTGGAAGTAAGTTGTTGAGCGGGG
AGCAGAGGCCGTTCTTGCTGGCGCAGGTTTGGCGTGTGCCAGCACTGCAA
GAGCGGCACGTGCGAGGAGTCTGAGCGGGGCACAGCTGCGCATTGGCAGG
AAATGCGCTGTCGCACTGTAGAATTAGCGGCACTTCACTCTGCTGACTTG
TGGGGCTAATGTTGTGGTGTGATTACCGCATGTCAGTGCTCAATTGTCTT
GTAGTTGAAGTTGCTGTTCACTTCCATGTACCTGGCCGAAAACCTCACAG
TCATACTTCAGATTCCACACCGTGACACGCCGGCTCCTTGAGGTGGATGC
TGCATCTGGTTTGTGACAGCGCCAGCGGCAACAGGTGCGAGCATGACATC
AAAAGCGATGCCATGTCATATGGTCACTGTTTGGGTTTCACATCAGTACT
TGAACAGAGCTCAAAACGCCACAAACATGCATGTATGCTTTGATCCTCCT
GCAACTTCAACTTGACTTGCAGCTCCGCGTACGAGGAGCAGACGGAGAAG
ATGCTGGGCCAGTATGAGTCCAAGGCGGGGAAGATCATGCAGCGCGTGGA
GAGGGAGAAGGTCAGAGCACCGTATGTACATTATTGCTTTGAGTTGGCAG
CACAGCGCGTACCAGCTAGGGGTGACAATAGTGTAGCTGGCTGGGACAAA
GATTATGCCCCGTAATTTAGGTAACAGATGGCCTTTGAGGCGGCAGTACC
GTGCGCTGGCGTGCCTCGAGCCTGGCCCGGGCCCTAACCTCGAAGCAGAC
GGTTTCTCAATGTTACGTGCCTTGGAAGTGACTGCAGTCGTGGAGATTGA
GCTGCAAGGAGCGGCAGCGGATATGGTGAATCTGCAGAGTGACGCAAATA
TGCCCACGTAGCTGCCTGCCCCCCCCCCCCTCCCCATGCTCCCCGGCATC
ATCATCAAGTGCGAGGAGTCACATCATGAAGTGCGGGGGCACGTATCCTC
TGCTCAGAGCTTGAGGTGGCAGCTAACGGGCACTGCGCCATATGAGTGGG
GGAGGGGTTTATGAGACTGTTGTCATCACAGTGAGCCACAGCGTGAGGCG
GATACCATCGCGTGACGTGATGTCACCATGCGCTTGCGTCTTGTCTCATG
AAGTGCCCGTTGCACACAGCATATTACTCCTTGGTGAGTGCGGACATCAA
TGTGCACTAGGCATTCGTCGCTACCCCTCAGTCTAGCACGTATCGAGACT
GGCCCTCCTGACTGCTGTTACACCCCTCACACCTGAATGCTGAAGGGGGG
GGTACATACAGAACATCCTGATCTGTTCTTCGCGACGCCATGAACGGCAC
CTCCCTTCGTGTGAACGGCCAAACTGAAAGCGTTGTGCTCAAAATGGACG
CGCGCAGGCCAACCTGGAGCGAGAGGTGGAGAACATGAAGGACCTCCAGG
CGAGCGTGGAGAAGGACTGGGTCTTCCAGCTGCAGTCGTTCCCTACCAAG
GGCGTCGTGAAGCAGAGCGCGCTCGTCTCGGCGATACTGCTGGCCAACCA
GGTGCGCGTCTGCATCGCTGCGCACTTGATTCCGTCAACTGTCATGCGAT
AGGTGCGATGCAGTGCTTCACGAATTGGCACTTGGTGGGGAGTTCTGTGC
GCGCCAAAGTCTCTGCACACCACCTACTGCAGCTGTTGCAACTTGCACAG
CCCTGATGCCCTGTCAGTGGCTAGAGTTTCGGCGAACTGTACCCCGAGTG
CAGTCGTTGGCGTAGGTGCTGCCCGGTTCTCAAGTGGTCCGGAATGCTTT
CCCTTGCTCATCACACGCTCATCACTTGCTGTTTTCATTGGGCGTCAATG
ATGGCGAAGGTGCAGTGCAGCAAGAGCGCCCCCCCCCCCCCCCCCCCCTT
CCCCCCCCTCGCGCGCGCGCGCCACCAGCACAACTCAACATCGCAACGCA
TCAGGGATGCATCGATTTTGACAGTCTTCCTAGGGCCCTGCCAGAGCACT
CAAACGCGCCTCAGCCGCACCGCCCCGCACCCCCCCCCCCCCCCCCCGCT
CCCCATCCCAGGCCGCGTACCAGGCGCTTCTGATTGTGGAGCGGCGCGGC
GGCGAGCCCGTCACGGCGGCGCTTGAGCTGGCGCTGGTGGCGGCAGCGCT
CTACTTCTACGGCCTGCGCTTGTAG

Coding sequence (CDS) from alignment at Contig_52:243051..247375+

>mRNA_9929 ID=mRNA_9929|Name=jgi.p|Trimin1|349945|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=975bp|location=Sequence derived from alignment at Contig_52:243051..247375+ (Tribonema minus UTEX_B_3156 )
ATGCGACGAGCGGCGAGGGCGTGTGGAGCGGCTGCTGCCCTGGTGGCACT
CGATCCCTGCGCGGCTTTTATATGCAGCAGCGGGCGGCCTGTGACCAAGT
CCAGCGAGTGCAAGTTGACATGCACAACCATCAGGGCAGGCATGAGGCGA
CCTTGGAGCGCTACTGTGGCAATCAGGTCCAGCGCCACGGACGCGGCGGA
GGGCACGGACGACATCGTGTCCAGCGCCACGGACGCGGCGGAGGGCACGG
CGGACGACATTGACCTCACCGACGACGAGGACGTGGCCAGCATACGCCTG
CGCCTGCTGCGCCAGTCGCCCGGCAACGACGGCTCTGACCCCCTGGAGAA
CGTCGTCCTGGAGGAGGACAGCGAGCAGTCGCCCCGCAACGACGGCTCCG
ACCCCCTGGAGAACGTCGTGCTGGAGGAGGACAGCAAGCAGATGGCGCAG
CTGGCGGAGAAGCTGCGCGACACCATGATGCTGCGCGCACAGGAGAGCGG
CGAGAACACGCTGAGCAGCTTCCTGGACGATGAGCTCAATCGCGGCGAGG
AGGAGCTGCGCTCGCTCGCGCAGGACCTCGTGTCGAAAGACGGGGCACCC
GGGGAGCAGTTTTTTGCTGAGGCGTTCAGCTCCGCGTACGAGGAGCAGAC
GGAGAAGATGCTGGGCCAGTATGAGTCCAAGGCGGGGAAGATCATGCAGC
GCGTGGAGAGGGAGAAGGCCAACCTGGAGCGAGAGGTGGAGAACATGAAG
GACCTCCAGGCGAGCGTGGAGAAGGACTGGGTCTTCCAGCTGCAGTCGTT
CCCTACCAAGGGCGTCGTGAAGCAGAGCGCGCTCGTCTCGGCGATACTGC
TGGCCAACCAGGCCGCGTACCAGGCGCTTCTGATTGTGGAGCGGCGCGGC
GGCGAGCCCGTCACGGCGGCGCTTGAGCTGGCGCTGGTGGCGGCAGCGCT
CTACTTCTACGGCCTGCGCTTGTAG