mRNA_9928 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|349944
Unique Name	mRNA_9928
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|349944 vs. uniprot
Match: A0A835YYC3_9STRA (S1 motif domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYC3_9STRA)

HSP 1 Score: 597 bits (1538), Expect = 7.070e-213
Identity = 378/378 (100.00%), Postives = 378/378 (100.00%), Query Frame = 1

Query:    1 MVRRGALVAVAVAASCCGPCARAFVQPALRCSGSSSLRRGVRRPLAATLVLQQTDDSLAERSSLEAAEPAAEEGXXXXXQDAAHQGEGRVLVPLSELKTGQRLIGSVVDVSPYAAFLDCGVSRSXXXXXXXXXXXXXXXXXXXXXXRGAGGKLCPCHGFLHRSDINRAAXXXXXXXXXXXXXXXXXXXDTGAAALKKGSHVSVYVKDVFPNSGRFTVTLDPAITRKKAPPRSFMNGIVALDSAFTREKVSFMRQKKREATTIARRSRRDATSTDPSEFKDGDEVVGVINKVTEKGLLVDVKTVSLLKMPIGAIRQARGGEFIENLRDLAQPGQSVRGRVVSAADKDGQAKLRLEFVDFVDDDGXXXXXXXESAGDGEA 1134
            MVRRGALVAVAVAASCCGPCARAFVQPALRCSGSSSLRRGVRRPLAATLVLQQTDDSLAERSSLEAAEPAAEEGXXXXXQDAAHQGEGRVLVPLSELKTGQRLIGSVVDVSPYAAFLDCGVSRSXXXXXXXXXXXXXXXXXXXXXXRGAGGKLCPCHGFLHRSDINRAAXXXXXXXXXXXXXXXXXXXDTGAAALKKGSHVSVYVKDVFPNSGRFTVTLDPAITRKKAPPRSFMNGIVALDSAFTREKVSFMRQKKREATTIARRSRRDATSTDPSEFKDGDEVVGVINKVTEKGLLVDVKTVSLLKMPIGAIRQARGGEFIENLRDLAQPGQSVRGRVVSAADKDGQAKLRLEFVDFVDDDGXXXXXXXESAGDGEA
Sbjct:    1 MVRRGALVAVAVAASCCGPCARAFVQPALRCSGSSSLRRGVRRPLAATLVLQQTDDSLAERSSLEAAEPAAEEGXXXXXQDAAHQGEGRVLVPLSELKTGQRLIGSVVDVSPYAAFLDCGVSRSXXXXXXXXXXXXXXXXXXXXXXRGAGGKLCPCHGFLHRSDINRAAXXXXXXXXXXXXXXXXXXXDTGAAALKKGSHVSVYVKDVFPNSGRFTVTLDPAITRKKAPPRSFMNGIVALDSAFTREKVSFMRQKKREATTIARRSRRDATSTDPSEFKDGDEVVGVINKVTEKGLLVDVKTVSLLKMPIGAIRQARGGEFIENLRDLAQPGQSVRGRVVSAADKDGQAKLRLEFVDFVDDDGXXXXXXXESAGDGEA 378

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BLAST of jgi.p|Trimin1|349944 vs. uniprot
Match: D7FJQ8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJQ8_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 1.300e-17
Identity = 80/268 (29.85%), Postives = 115/268 (42.91%), Query Frame = 1

Query:  280 LSELKTGQRLIGSVVDVSPYAAFLDCGVSRSXXXXXXXXXXXXXXXXXXXXXXRGAGGKLCPCHGFLHRSDINRAAXXXXXXXXXXXXXXXXXXXDTGAAALKKGSHVSVYVKDVFPNSGRFTVTLDPAITRKKAPPRSFMNGIVALDSAFTREKVSFMRQKKREATTIARRSRRDATSTDPSEFKDGDEVVGVINKVTEKGLLVDVKTVSLLKMPIGAIRQARGGEFIENLRDLAQPGQSVRGRV--VSAADKDGQAKLRLEFVDFV 1077
            + ELKTG ++IG V D + +AAF+DC V R                       +G+  K+ P  GFLH +DI R                           +KKG H++ YVKDVFPN+GR T++LDP I +                     +KV  +R  KR+ +   R SRR+           GD V G + +V E  LLVDV    L  +    IR +  G+   NL +  +PG  +  R+  +  + + G AK     +DFV
Sbjct:  121 IKELKTGDKVIGYVADTTNFAAFVDCSVVR-----------------------QGSKNKIVPVTGFLHLTDIKRPYALEGTPGVKDCE-----------VEVKKGIHLTAYVKDVFPNAGRMTLSLDPNINK---------------------DKVLKLRDSKRQRS---RNSRRERLHKKGRRHAVGDIVEGYVREVHESMLLVDVMFAQLSVLRASNIRNSEEGQKFVNLSNKTKPGDLITVRIEDIETSKRRG-AKDDKATIDFV 329

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BLAST of jgi.p|Trimin1|349944 vs. uniprot
Match: W7TQN5_9STRA (Nucleic acid-binding protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TQN5_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 7.540e-12
Identity = 50/134 (37.31%), Postives = 62/134 (46.27%), Query Frame = 1

Query:  280 LSELKTGQRLIGSVVDVSPYAAFLDCGVSRSXXXXXXXXXXXXXXXXXXXXXXRGAGGKLCPCHGFLHRSDINRAAXXXXXXXXXXXXXXXXXXXDTGAAALKKGSHVSVYVKDVFPNSGRFTVTLDPAITRKK 681
            L  L+ G RL G VV V+ +AAFLD  V R                        G GGKL  C+  LH  D+                       +T    +++G HVSVYVKDVFPNSGRF+VTLDP+I + K
Sbjct:  105 LQALRPGMRLHGGVVGVTEFAAFLDVKVVRE-----------------------GPGGKLVRCNAMLHPHDVPEGIKLLRDSHNQPLPL------ETDPNVIRRGIHVSVYVKDVFPNSGRFSVTLDPSIDKAK 209

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BLAST of jgi.p|Trimin1|349944 vs. uniprot
Match: K8Z3D9_NANGC (UV excision repair protein RAD23 (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z3D9_NANGC)

HSP 1 Score: 76.3 bits (186), Expect = 2.140e-11
Identity = 50/134 (37.31%), Postives = 62/134 (46.27%), Query Frame = 1

Query:  280 LSELKTGQRLIGSVVDVSPYAAFLDCGVSRSXXXXXXXXXXXXXXXXXXXXXXRGAGGKLCPCHGFLHRSDINRAAXXXXXXXXXXXXXXXXXXXDTGAAALKKGSHVSVYVKDVFPNSGRFTVTLDPAITRKK 681
            L  L+ G RL G VV V+ +AAFLD  V R                        G GGKL  C+  LH  D+                       +T    +++G HVSVYVKDVFPNSGRF+VTLDP+I + K
Sbjct:  105 LQALRPGMRLHGGVVGVTEFAAFLDVKVVRE-----------------------GPGGKLVRCNAMLHPHDVPEGIKLLRDSHNQPLPL------ETDPNVIRRGIHVSVYVKDVFPNSGRFSVTLDPSIDKAK 209

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BLAST of jgi.p|Trimin1|349944 vs. uniprot
Match: A0A7S3M9U3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M9U3_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 4.600e-9
Identity = 60/207 (28.99%), Postives = 85/207 (41.06%), Query Frame = 1

Query:  280 LSELKTGQRLIGSVVDVSPYAAFLDCGVSRSXXXXXXXXXXXXXXXXXXXXXXRGAGGKLCPCHGFLHRSDINRAAXXXXXXXXXXXXXXXXXXXDTGAAALKKGSHVSVYVKDVFPNSGRFTVTLDPAITRKKAPPRSFMNGIVALDSAFTREKVSFMRQKKREATTIARRSRRDATSTDPSEFKDGDEVVGVINKVTEKGLLVDV 900
            LS LKTG +L G VV  +PYAAF+D GV R                          GG   P H  LH+SDI +                        +  L K + +SV+VK+V   +GRFTVT D  +T+            ++L     RE+ S  R+        +RR RR      P     G    G+++KV ++G+LV +
Sbjct:    6 LSTLKTGMKLDGYVVSSTPYAAFIDAGVVRVSK-----------------------GGSFAPVHAMLHKSDIPKEVLNSLRKGQHQFPSPIPGP----SPLLPKNTPLSVFVKEVTKQTGRFTVTTDSTVTKAD----------LSLAHNQVREEASERRR--------SRRLRRQLEDITP-----GTTAEGLVDKVVDEGVLVTI 162

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BLAST of jgi.p|Trimin1|349944 vs. uniprot
Match: A0A7S2UWN5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWN5_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 1.750e-5
Identity = 41/137 (29.93%), Postives = 55/137 (40.15%), Query Frame = 1

Query:  271 LVPLSELKTGQRLIGSVVDVSPYAAFLDCGVSRSXXXXXXXXXXXXXXXXXXXXXXRGAGGKLCPCHGFLHRSDINRAAXXXXXXXXXXXXXXXXXXXDTGAAALKKGSHVSVYVKDVFPNSGRFTVTLDPAITRKK 681
            +V L  LKTG    G V  V+ +  FL+CG+ R                        G  G +    G LH++D+  +                          L+KG  V  YVK VFP SGRF++T+DP ITR K
Sbjct:  138 MVWLKTLKTGMPFYGGVKSVTNFGVFLECGIVRP-----------------------GRKGTVTRVQGMLHKTDLAPSMKVPFQYRPK------------ATKVLEKGMTVKCYVKAVFPQSGRFSLTMDPTITRAK 239

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BLAST of jgi.p|Trimin1|349944 vs. uniprot
Match: A0A835YVK2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVK2_9STRA)

HSP 1 Score: 434 bits (1117), Expect = 3.300e-150
Identity = 225/225 (100.00%), Postives = 225/225 (100.00%), Query Frame = 1

Query:    1 MRISEALLAVTLLAAGANARWTLEADAQFITEAPTEAPXXXXXXXXXTPGCLCETVTLTGVPDADPAPLCPGVKYDVPVVTAEDNCGNARAVDVLVDYSTNSGDRCATAIYTFTAACPLLDGGGGGPDEVTRVTSRGVTAERIRPVVTLNADADCHYTAQDFVTDCAAAGGAGAYVDLKSVGIAGDVCTHRCRPGGVDAYVIAANVCGDPFDFVLPLDVCSAAEA 675
            MRISEALLAVTLLAAGANARWTLEADAQFITEAPTEAPXXXXXXXXXTPGCLCETVTLTGVPDADPAPLCPGVKYDVPVVTAEDNCGNARAVDVLVDYSTNSGDRCATAIYTFTAACPLLDGGGGGPDEVTRVTSRGVTAERIRPVVTLNADADCHYTAQDFVTDCAAAGGAGAYVDLKSVGIAGDVCTHRCRPGGVDAYVIAANVCGDPFDFVLPLDVCSAAEA
Sbjct:    1 MRISEALLAVTLLAAGANARWTLEADAQFITEAPTEAPXXXXXXXXXTPGCLCETVTLTGVPDADPAPLCPGVKYDVPVVTAEDNCGNARAVDVLVDYSTNSGDRCATAIYTFTAACPLLDGGGGGPDEVTRVTSRGVTAERIRPVVTLNADADCHYTAQDFVTDCAAAGGAGAYVDLKSVGIAGDVCTHRCRPGGVDAYVIAANVCGDPFDFVLPLDVCSAAEA 225

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|349944 vs. uniprot
BLAST of jgi.p|Trimin1|349944 vs. uniprot

BLAST of jgi.p|Trimin1|349944 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6


Match Name	E-value	Identity	Description
A0A835YYC3_9STRA	7.070e-213	100.00	S1 motif domain-containing protein n=1 Tax=Tribone...	[more]
D7FJQ8_ECTSI	1.300e-17	29.85	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]
W7TQN5_9STRA	7.540e-12	37.31	Nucleic acid-binding protein n=2 Tax=Monodopsidace...	[more]
K8Z3D9_NANGC	2.140e-11	37.31	UV excision repair protein RAD23 (Fragment) n=1 Ta...	[more]
A0A7S3M9U3_9STRA	4.600e-9	28.99	Hypothetical protein (Fragment) n=1 Tax=Spumella e...	[more]
A0A7S2UWN5_9STRA	1.750e-5	29.93	Hypothetical protein n=1 Tax=Fibrocapsa japonica T...	[more]

BLAST of jgi.p|Trimin1|349944 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A835YVK2_9STRA	3.300e-150	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_52	contig	Contig_52:237016..242967 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|349944\|estExt_Genemark1.C_Ctg_520028
Hectar predicted targeting category	signal peptide
Ec32 ortholog description	OB-fold nucleic-acid-binding protein
Ec32 ortholog	Ec-06_010560.1
TranscriptId	350266
Track	FilteredModels1
ProteinId	349944

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|349944	gene_9928	Tribonema minus UTEX_B_3156	gene	Contig_52 237016..242967 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|349944	Trimin1\|349944\|estExt_Genemark1.C_Ctg_520028	Tribonema minus UTEX_B_3156	polypeptide	Contig_52 237016..242967 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_9928_10	exon_9928_10	Tribonema minus UTEX_B_3156	exon	Contig_52 237016..237034 -
exon_9928_9	exon_9928_9	Tribonema minus UTEX_B_3156	exon	Contig_52 237119..237291 -
exon_9928_8	exon_9928_8	Tribonema minus UTEX_B_3156	exon	Contig_52 238198..238293 -
exon_9928_7	exon_9928_7	Tribonema minus UTEX_B_3156	exon	Contig_52 238678..238782 -
exon_9928_6	exon_9928_6	Tribonema minus UTEX_B_3156	exon	Contig_52 239377..239439 -
exon_9928_5	exon_9928_5	Tribonema minus UTEX_B_3156	exon	Contig_52 239492..239608 -
exon_9928_4	exon_9928_4	Tribonema minus UTEX_B_3156	exon	Contig_52 240381..240434 -
exon_9928_3	exon_9928_3	Tribonema minus UTEX_B_3156	exon	Contig_52 240721..240858 -
exon_9928_2	exon_9928_2	Tribonema minus UTEX_B_3156	exon	Contig_52 240964..241032 -
exon_9928_1	exon_9928_1	Tribonema minus UTEX_B_3156	exon	Contig_52 242665..242967 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_9928	CDS_9928	Tribonema minus UTEX_B_3156	CDS	Contig_52 242665..242967 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_52:237016..242967-
coding sequence from alignment at Contig_52:237016..242967-

spliced messenger RNA

>mRNA_9928 ID=mRNA_9928|Name=jgi.p|Trimin1|349944|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1137bp|location=Sequence derived from alignment at Contig_52:237016..242967- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGCGAAGAGGAGCGCTGGTGGCAGTGGCGGTGGCGGCGAGCTGCTG
CGGGCCCTGCGCGAGGGCCTTCGTGCAGCCGGCGCTGCGGTGCAGCGGCA
GCAGCAGCTTGAGACGAGGCGTCAGGCGGCCACTGGCAGCCACTCTTGTG
CTGCAGCAAACCGATGACTCACTGGCGGAGCGCAGCAGCTTGGAAGCAGC
AGAGCCGGCAGCAGAGGAGGGCGAGCAGCAGCAACAGCAGGATGCCGCTC
ATCAAGGGGAGGGGCGCGTACTCGTGCCATTAAGCGAGCTGAAAACAGGC
CAGCGGCTCATCGGTAGCGTGGTGGACGTGAGCCCGTACGCGGCGTTCCT
GGACTGCGGCGTGTCGCGTAGCCGGCTCATTGGGAGCGTGGTGGACGTGA
GCCCGTACGCGGCGTTCCTGGACTGCGGCGTATCGCGCAGGGGCGCGGGG
GGAAAGCTGTGCCCGTGCCATGGGTTCCTGCACCGGTCGGACATCAACCG
CGCGGCAAAGCTGTGCCCGTGCCATGGGTTCCTGCACCGGTCGGACATCA
ACCGGGCGGCAAAGGACACGGGCGCGGCAGCGCTCAAGAAGGGCTCCCAC
GTGTCGGTGTACGTCAAGGACGTGTTCCCCAACAGCGGCCGCTTCACCGT
CACACTGGACCCCGCCATCACGCGCAAGAAGGCACCGCCGCGCTCATTCA
TGAATGGCATCGTCGCGCTCGACTCCGCTTTTACGCGCGAGAAGGTGTCA
TTCATGCGGCAGAAGAAGCGCGAGGCCACGACGATCGCGCGCCGCAGCCG
GCGCGACGCCACCAGCACCGACCCCAGCGAGTTCAAGGACGGCGATGAGG
TGGTTGGGGTCATCAACAAGGTGACCGAGAAGGGCCTTCTCGTAGACGTG
AAGACCGTTTCGCTGCTGAAGATGCCCATCGGCGCCATCCGACAGGCGCG
CGGCGGCGAGTTCATCGAGAATCTGCGCGACCTTGCTCAGCCGGGGCAGA
GCGTGCGTGGGCGCGTCGTCTCCGCCGCCGACAAGGACGGCCAGGCGAAG
CTGCGCCTCGAGTTCGTCGACTTTGTGGACGACGACGGCAGCAGCAGCAG
CAGCAGCAGCGAGAGCGCCGGGGATGGGGAGGCCTAG

protein sequence of jgi.p|Trimin1|349944

>Trimin1|349944|estExt_Genemark1.C_Ctg_520028 ID=Trimin1|349944|estExt_Genemark1.C_Ctg_520028|Name=jgi.p|Trimin1|349944|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=379bp
MVRRGALVAVAVAASCCGPCARAFVQPALRCSGSSSLRRGVRRPLAATLV
LQQTDDSLAERSSLEAAEPAAEEGEQQQQQDAAHQGEGRVLVPLSELKTG
QRLIGSVVDVSPYAAFLDCGVSRSRLIGSVVDVSPYAAFLDCGVSRRGAG
GKLCPCHGFLHRSDINRAAKLCPCHGFLHRSDINRAAKDTGAAALKKGSH
VSVYVKDVFPNSGRFTVTLDPAITRKKAPPRSFMNGIVALDSAFTREKVS
FMRQKKREATTIARRSRRDATSTDPSEFKDGDEVVGVINKVTEKGLLVDV
KTVSLLKMPIGAIRQARGGEFIENLRDLAQPGQSVRGRVVSAADKDGQAK
LRLEFVDFVDDDGSSSSSSSESAGDGEA*

mRNA from alignment at Contig_52:237016..242967-

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9928 ID=mRNA_9928|Name=jgi.p|Trimin1|349944|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=5952bp|location=Sequence derived from alignment at Contig_52:237016..242967- (Tribonema minus UTEX_B_3156 )
ATGGTGCGAAGAGGAGCGCTGGTGGCAGTGGCGGTGGCGGCGAGCTGCTG
CGGGCCCTGCGCGAGGGCCTTCGTGCAGCCGGCGCTGCGGTGCAGCGGCA
GCAGCAGCTTGAGACGAGGCGTCAGGCGGCCACTGGCAGCCACTCTTGTG
CTGCAGCAAACCGATGACTCACTGGCGGAGCGCAGCAGCTTGGAAGCAGC
AGAGCCGGCAGCAGAGGAGGGCGAGCAGCAGCAACAGCAGGATGCCGCTC
ATCAAGGGGAGGGGCGCGTACTCGTGCCATTAAGCGAGCTGAAAACAGGC
CAGGTGAGCAGCCACGTTGATGTTGACGTTTCTGTGGCGGTGCGGTGTGC
GGCGACCCCGGCATGCCATGAATAGAACAATTCGCAGCTGATTAACTGAG
ATATTGTGCACACGCAATCTGTAGCCTAGCTGCGGTCCCTACTATTGTGA
AAAAGAGATGACAGCGCCAGAGCCGCGCGTGATCACGAATTACGTGACCC
CTGCACTAAGTCTTTTGCAGTTCCCGCCTCGCGCATATTGCTGCGCTTCC
ACAACAGCAATTTACCAGTGTTTACAGCTTGTAGGTCACGCTTGTTGTCT
TGCGTGACCCCATTGTATCGACGACTGGCGCTGCTGACCACCAAGAAGCG
CGTTAGATTGCAGCGACAGAGCTGAAGTACTAACTGTGGCGCGCCACAGT
TTCGCGCTTGATGCCAGGCGACAGTGGTACATGTGCAGGCAATGCCCACA
ATCATAGTGGAACCTTAGGTAAAAGAGGTGTGTTGAAGTACTCCAGTACA
CGTTTCACCTTTGCCCTCGCCCTCCCTGGTGAAATGATGCTGATGAAGTA
CAAGTTGTGGACGTGCCTTCTGGTTTGAAGTTAAGGCGGTACGCGAATCA
CCTTGAATTTACCAATGTTTCGATAAATGCGCTGCATCTGTGTTGCAGGC
TGGTTGCAATGCTTGTTTGTTGGTGTCGCGCCTCTGCACGTCAACACACT
GTATCGACTCTATGGTGAAGTGAGCATAACACCATCAGCGCACCCTGCAG
AGAGCAGCTTCACGGGTTATTTGCATAAAAAAACTGCATTACTGCAGTTT
CACTCGGGAACACAGCATGATGTCCTTGCGGTACCTTGTGGCTATGCAAT
TTTTTTTGTGTGCTGCAACCTAAATTTTGAAGTGCATTCGTATGGTAGCT
CAAAATGTGGCAGTTGTCAGCACGTGTGCGGCTGGTTGCACATGGGGTTG
CTAGCATTGATGCCGACTCTGGACAACACTGACTGTGAAGTACTCTGCGG
AAACACCCTGACATGAGCCTTTTGAAGTATGCTGAGAACTGCCTGCTTTG
AGTTATTGTGGAAATACCCCAAACAGTACCTACTGCTTCAGATATAGGTG
CTGGAATGTACTTAGTGAAGGCACCGCGCCTGGTAAGAAAGGAACGTAGA
TTTTGAGTTGTGATCTGTGAAGGCGTGACATGTTGCGGCGCTGCCTGCTA
GCCATCGGATCCTCTAACATAGCACACACGCATGGTCTCAGACGCGCTGT
GCGTAACGAATGCCACCGCGCTGGTCCGACCCTTCACCTCGTTGTCAAAA
TTCAACTCATTACGTCCTTCGTTTGAAAGACGGCCGCTGTCCTACGGATG
TCAATGATGTGCAATTTTCTGATGAATGTTCAACTGCGCGCGTCTCACGC
CTCCCACACACAATAGCACGGTGTGTATTCAACATCAACCCCCGGCGTGT
TCGCGTCGTTATCCTGCGCAGCGGCTCATGTCGCGCAGCTAAGGACTGTA
GGTAGTGATTTACACTTATCTGATGAGTGTTTAACTCCGCGCGTCTCACG
TCTCCCACGCACGGTAGCGTCCTTCAACCGCGCGGTCTAACTTCAACTTC
AACCCCCGGTGTGTTCACTTCATCATCCTGCTCAGCGGCTCATCGGTAGC
GTGGTGGACGTGAGCCCGTACGCGGCGTTCCTGGACTGCGGCGTGTCGCG
TAGCGTCCTTCACAATGCACAGTTCAAGTTCAGCTTAAACTCTCCCAGTG
TGTGTTCACGTCAACTTGAAATTCAACTCCTGGCGTGTTTACGTTGCGAT
CCTGTGCAGCGGCTCATTGGGAGCGTGGTGGACGTGAGCCCGTACGCGGC
GTTCCTGGACTGCGGCGTATCGCGCAGGGGCGCGGGGGGAAAGCTGTGCC
CGTGCCATGGGTTCCTGCACCGGTCGGACATCAACCGCGCGGCAAAGGTA
CGGCGTTGCAAAATCCCGACACTCAATTGCCGCGGTTTTGGAGCATCCTA
TCCAGCAAGCGAAAGTAACGGAGTCTTATTTGTATCCAAGTACGTATTTC
GAAGTGTTTGCTTTGAATTTGCGATTGCATTAGTAGGCATACTGTACCGG
TCGGACATCAACCGCGCGGCAAAGGTGCGCGATGTTGCTGGGTCCTGGAA
CTCAATTGTCGCGGCATCAGAACATGACATAAAGCAACTGAACCTTGATT
TCTCATGGTTTATATTGTCATGTTTGCTTCAAGCTGTGCCCGTGCCATGG
GTTCCTGCACCGGTCGGACATCAACCGGGCGGCAAAGGTGCGCGATGTTG
CTGGGTCCCGACACCCAATCGCCGCGGCATCGGAGCGTCAAAGAACAGCC
GTCAAAGTGAACGTTGCCATACGCGTACTCGAATATTTACGTACTTCACA
GTGTTTGGCCTGATTTCACTGTTGTATCAACAGGCATATCGCGGTTCTGC
GCAAAGCAGGAACTGTCGCCATCACCTGTTTAGACACTACTAACCTGCAG
TGAGGGGACGGGGCACTTGGTGCGGATACACAATAGTGGTGACGCCGGGG
GTAAGCTTGAAAGTTCAGGCTTTTAAGGGAAGACACTCGCGTATAAAATA
TACATAAACGCGGCTATATATCAATGGTAGATTGTCTGCATGGCGGCGGC
TGTCTTCGCGGTGCGCCGCCTGTGCCCTTGGGGTTAGGGTTAGCCCTACC
CTAACCCTAACCCTAAGCGGGAGGCGCCCGCAGCAGCCTACATGGACAAC
AGCTCGCATACAGCTGCGCGCAACGTGCCACACCGCTCAACCGGTCATCG
TTTTACGTACCGGAGGGGAGAGCGACGGCACACCTTCAGCCGCGCATCTC
GTACTTCTACCCTTCACGCCCAACCCCATCCATAACTTGTCTTGCGGGCC
TTTGCCCTCGGTTGTATGTAACCCTGTTTACTGGAGACAGCGCTCCTTAG
CCCCTATCGCACGCAGTGACATTGAACGTTGTTGACTTGAGCCTTGTGTA
GTAGCACAGAGGCCCGACCCTGCCCGCCATATCCAAACTTCAACCCTACT
TGTGCACAGGACACGGGCGCGGCAGCGCTCAAGAAGGGCTCCCACGTGTC
GGTGTACGTCAAGGACGTGTTCCCCAACAGCGGCCGCTTCACCGTCACAC
TGGACCCCGCCATCACGCGCAAGAAGGTGAGCCCTGTACCGTGTTTCACC
CCATGAGTTAAACCATGAATTCATTCAGGCACCGCCGCGCTCATTCATGA
ATGGCATCGTCGCGCTCGACTCCGCTTTTACGCGCGAGAAGGTAAGCGCC
GTGCCGCGGTTTCACCCCCGTGTATTCACTCATGCACCGCGTTCACTCAT
GAGTGGGTTTGCGGGGTGTTTGTCATCGACGGCAGCTGGGTTTGCTGTTG
CGCGCCAGGCGGCGAGCGCCGCTGTGATCACTGCCCATGTGCTGCATACA
GGTCCTTTGTTCACCCGGAAGTGGAGCATTGCGTGTGAAGTCTCCGCAGC
CAAAAGCAGCTGCGCTCGAGGGCAACTCTGGGACTGAGGCTCACGCAACC
CAGGCGCCCCATCTTAGAGTTGGGGGTTTCACGGCATCGCGCGCGGCACT
GCCAATGTGCTTTCGCCAGGCGTAGGCGACAGCTGCATGTGCATCAAAAC
GCGGCGTAGCCAGCGCGTGTACTGTGGCTGACTGTGCGTGTACTGTGGGT
GTACTCTGCAGTACAGCATGCATACCACGCGACCGCGCCGTTCCAGTTTC
GTTGGGTCAGCACGTAGGGCGTCAGTTGATCTTGCTCACTGCGTGACACC
CAGCGAATGTGCGGCGATATGCTTTTGTCGAGTACGATGAGGCACACTCA
GAATGGATTGTTTATTTGTTCACATGGCTGTGCAGGTGTCATTCATGCGG
CAGAAGAAGCGCGAGGCCACGACGATCGCGCGCCGCAGCCGGCGCGACGC
CACCAGCACCGACCCCAGCGAGTTCAAGGACGGCGATGAGGTGCGCGCGT
GTACTGCATGTGTACTGCTTGTGTACTATTTCGCGTCGCTTATCGAGGGC
ACCCGATAGCCTAGGTGTTCGACCTTGCCTTGGAAGGGTGTTTGTCAGGT
CTCAAAATGGTGCAGCCGCCTTCCACGTTGGACCAGTCGATCACTTGGCG
CTCTTTAATTGAAGGTCGTGGGTTGTGTGCTTTTTGGTGTTTGATTGGAA
GTTGTTTCAAGTGGCTCGACTGAAGTGACCCAGGAACGTAACTTTCATTC
TTCTTGTGCGTCCCCTGTGAACGAACGTGCCTGTGAAGGCGTGTGGTGAC
ATGCACACACGTGTCATAATCAGCTCATTTGCGCGCGACGTGACGTGGCT
TTTGCCTGCACTTTTCATTGCCAGGTGGTTGGGGTCATCAACAAGGTGAC
CGAGAAGGGCCTTCTCGTAGACGTGAAGACCGTTTCGCTGCTGAAGATGC
CCATCGGCGCCATCCGACAGGTGAGCCAGCCGCCCAGATATCCCATACTT
CTACTTCAATGTTGAAGCCTGCAAATGCGGTGACGTACGCGCAGCTGCTG
GCGCCCTTGCGCATGCCTCAAGGTGCACTCAGCGTGTTTGCGGTATAAGT
CAAGCATACTGACGGCACGTTGCAGGTGCACTGTGAGACAGTCCACCTGT
GCAGCAACGCCGCCACTTGTCGTTCGGGGCCCCATGCGCGCATGGCCGGC
GATAGCAGGGCCATGGCAATGTCATACGCGTCACTATCCCATTGCGGCGC
CAGGTGAAAGAGTGCAGGCAGCCAACAAGGACTTCATACTACTCGATTGT
GTGCCCAACGCCGTGCAAGCATTTCATGGTCTACACAGCGTCAAGAGGGC
TGTGATTCTGCACGCGCCTGCTGGCGCAGTGCGCGAGCCTCCCTGCTGCC
CCGCGTACGCTGAGACATGCCACATCGCTGCGCCTATAGCTGTAAGCGCG
TCACCTCCAGCGCTGCCGTGGTCCCCTCCTCTCACCCCCCGCCATGCGCA
GCGCCGCCAGCGCCGTGCCTGACGCTTGGTCACCTAGTGGTGGCGGCGCA
CACGCAGCACAGAGCACGCGTTCGTGCAGGCACAGCGGTCAACCGGCAGT
GCTCTGCTCAGGCTGCACACAGCAACATGCTTACATGGCGTGCCATCTGC
GACGCGCGTCACGCCATGTTGTAATGGCACAATGCTCCTGTGGTGGGCTG
CCCCCCCAGTGATGGGCTGCCCCCCCACACACCTTCCATCCCCCTCCCCC
ACCACTGCCCCCTTGCATGACCGTCTCTGAACAGAGTCAATGGCACGCAG
TTGTCGCACTGCGTCCCCTGCTATTATCGTACAATGACACACAGTTGTCT
CACTGTGTCCCCTTCTATTATCACAGGCGCGCGGCGGCGAGTTCATCGAG
AATCTGCGCGACCTTGCTCAGCCGGGGCAGAGCGTGCGTGGGCGCGTCGT
CTCCGCCGCCGACAAGGACGGCCAGGCGAAGCTGCGCCTCGAGTTCGTCG
ACTTTGTGGACGACGACGGCAGCAGCAGCAGCAGCAGCAGCGAGAGCGCG
TAGCGCAGCATTAGCAATCCGCCTGTCAGCCAGCCGTATGGCACACACCT
CAGCAGCATATGCTGGTGCTTGCCGGTGTGCAGCGGGGATGGGGAGGCCT
AG

Coding sequence (CDS) from alignment at Contig_52:237016..242967-

>mRNA_9928 ID=mRNA_9928|Name=jgi.p|Trimin1|349944|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1137bp|location=Sequence derived from alignment at Contig_52:237016..242967- (Tribonema minus UTEX_B_3156 )
ATGGTGCGAAGAGGAGCGCTGGTGGCAGTGGCGGTGGCGGCGAGCTGCTG
CGGGCCCTGCGCGAGGGCCTTCGTGCAGCCGGCGCTGCGGTGCAGCGGCA
GCAGCAGCTTGAGACGAGGCGTCAGGCGGCCACTGGCAGCCACTCTTGTG
CTGCAGCAAACCGATGACTCACTGGCGGAGCGCAGCAGCTTGGAAGCAGC
AGAGCCGGCAGCAGAGGAGGGCGAGCAGCAGCAACAGCAGGATGCCGCTC
ATCAAGGGGAGGGGCGCGTACTCGTGCCATTAAGCGAGCTGAAAACAGGC
CAGCGGCTCATCGGTAGCGTGGTGGACGTGAGCCCGTACGCGGCGTTCCT
GGACTGCGGCGTGTCGCGTAGCCGGCTCATTGGGAGCGTGGTGGACGTGA
GCCCGTACGCGGCGTTCCTGGACTGCGGCGTATCGCGCAGGGGCGCGGGG
GGAAAGCTGTGCCCGTGCCATGGGTTCCTGCACCGGTCGGACATCAACCG
CGCGGCAAAGCTGTGCCCGTGCCATGGGTTCCTGCACCGGTCGGACATCA
ACCGGGCGGCAAAGGACACGGGCGCGGCAGCGCTCAAGAAGGGCTCCCAC
GTGTCGGTGTACGTCAAGGACGTGTTCCCCAACAGCGGCCGCTTCACCGT
CACACTGGACCCCGCCATCACGCGCAAGAAGGCACCGCCGCGCTCATTCA
TGAATGGCATCGTCGCGCTCGACTCCGCTTTTACGCGCGAGAAGGTGTCA
TTCATGCGGCAGAAGAAGCGCGAGGCCACGACGATCGCGCGCCGCAGCCG
GCGCGACGCCACCAGCACCGACCCCAGCGAGTTCAAGGACGGCGATGAGG
TGGTTGGGGTCATCAACAAGGTGACCGAGAAGGGCCTTCTCGTAGACGTG
AAGACCGTTTCGCTGCTGAAGATGCCCATCGGCGCCATCCGACAGGCGCG
CGGCGGCGAGTTCATCGAGAATCTGCGCGACCTTGCTCAGCCGGGGCAGA
GCGTGCGTGGGCGCGTCGTCTCCGCCGCCGACAAGGACGGCCAGGCGAAG
CTGCGCCTCGAGTTCGTCGACTTTGTGGACGACGACGGCAGCAGCAGCAG
CAGCAGCAGCGAGAGCGCCGGGGATGGGGAGGCCTAG