Trimin1|349909|estExt_Genemark1.C_Ctg_510062 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|349909
Unique NameTrimin1|349909|estExt_Genemark1.C_Ctg_510062
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length1351
Homology
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BLAST of jgi.p|Trimin1|349909 vs. uniprot
Match: A0A836CCZ5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCZ5_9STRA)

HSP 1 Score: 1964 bits (5089), Expect = 0.000e+0
Identity = 1350/1350 (100.00%), Postives = 1350/1350 (100.00%), Query Frame = 0 
Query:    1 MTGGRSSSNGLVGGTGILTVVGHVISFSDGRPAEVLGSEEAYLHHKTTCVPKVLGGTKQQETLLLRVGRGGVKGLKLIKRVFKGVLGPFEETLEVGDFKEGVHECPLPASDVPNTLLSRGRYRCEVSICDASGALLWKLASAFQIVKPPGDGSSSSGDKGGLGSRKSRDSAGGLDHAASQQRVVKTQSQRKPGRTAAAAADGEHSQFEDSVRAMKLFGRQGKWPSVLAELDALHGRVRSGALPPLPVSVYNTAISATSKSGRSNEALALLGTMAKNGAAPDVVSYRGKKLELALSLLDEMDRSNVEPNIVTFNTILTGCGVKGDWRLXXXXXXXXXXXXXXXXXXXXXXXXXXXXREAQADLAAQLLDEMQLKYALRPGRAAYQFALAALKASGEWQRCLQLLADMRAAGTAPDATCYKHAAAAMARAGQLAELELVLRAMEAAXXXXXXXXXXXXXXXXXXXXXXEHAVAYNAAIAAHGRAGDWRGALAMMERMRQAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRGCCGGSTSTSSSGESGGGGADWRVALELLDEARRRGLRPDRGTYLQSMRACMAAAXXXXXXXXXXPPHRVADAAAEGSAKCVQEAPAAAALRLHVEMQAQGITPDGRTMATALAAAALAGDGATAVGLLRRMTRDGCEVGASAYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALVRRMRAHAAGATPDAVALSXXXXXXXXXXXXXXXXXXXXWAREDGVALAPQLALALLRCLAAAPPDAAADALAARCADAAPALVDAVLGQRPASGAAAATQAAAVLGRAGRWAEAVALLARLEAAGAAADXXAYAAVISACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDWRAASELAREAAAAGSDGRGARVWNAALAACARAGEADGALALLAESGTTADAMSHVLAARALRRRGDAQRALATLERAPAPLVAECVDLRIALLGQLVRTTEALDTLNALKSGQYAFPPGAASYAAAIAAVGGTGDWRLCGALAAEARQAGLAPLPRRAYDALLEVYENGARWREALAVLGDMEADGVLVDAAAVVHAARACMAAAQWQQAADVAQRHLXXXXXXXXXXXXXXXXEHHARILGLALKACASGGLGAQALHLLQHCTPPAAAAARQHYALAAAAHARGNASAAPVLELMRQRGVAQGMDTVAALARAHCEAAQWRRATALLASARDAGLVRPVASGDADYARHLSQFLESLTRAAAAVGSRRAVLAVVACVRESYGGGAPPPAPLVRRIVAALEEVDAHDDATAFAAQFQTSDI 1350
            MTGGRSSSNGLVGGTGILTVVGHVISFSDGRPAEVLGSEEAYLHHKTTCVPKVLGGTKQQETLLLRVGRGGVKGLKLIKRVFKGVLGPFEETLEVGDFKEGVHECPLPASDVPNTLLSRGRYRCEVSICDASGALLWKLASAFQIVKPPGDGSSSSGDKGGLGSRKSRDSAGGLDHAASQQRVVKTQSQRKPGRTAAAAADGEHSQFEDSVRAMKLFGRQGKWPSVLAELDALHGRVRSGALPPLPVSVYNTAISATSKSGRSNEALALLGTMAKNGAAPDVVSYRGKKLELALSLLDEMDRSNVEPNIVTFNTILTGCGVKGDWRLXXXXXXXXXXXXXXXXXXXXXXXXXXXXREAQADLAAQLLDEMQLKYALRPGRAAYQFALAALKASGEWQRCLQLLADMRAAGTAPDATCYKHAAAAMARAGQLAELELVLRAMEAAXXXXXXXXXXXXXXXXXXXXXXEHAVAYNAAIAAHGRAGDWRGALAMMERMRQAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRGCCGGSTSTSSSGESGGGGADWRVALELLDEARRRGLRPDRGTYLQSMRACMAAAXXXXXXXXXXPPHRVADAAAEGSAKCVQEAPAAAALRLHVEMQAQGITPDGRTMATALAAAALAGDGATAVGLLRRMTRDGCEVGASAYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALVRRMRAHAAGATPDAVALSXXXXXXXXXXXXXXXXXXXXWAREDGVALAPQLALALLRCLAAAPPDAAADALAARCADAAPALVDAVLGQRPASGAAAATQAAAVLGRAGRWAEAVALLARLEAAGAAADXXAYAAVISACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDWRAASELAREAAAAGSDGRGARVWNAALAACARAGEADGALALLAESGTTADAMSHVLAARALRRRGDAQRALATLERAPAPLVAECVDLRIALLGQLVRTTEALDTLNALKSGQYAFPPGAASYAAAIAAVGGTGDWRLCGALAAEARQAGLAPLPRRAYDALLEVYENGARWREALAVLGDMEADGVLVDAAAVVHAARACMAAAQWQQAADVAQRHLXXXXXXXXXXXXXXXXEHHARILGLALKACASGGLGAQALHLLQHCTPPAAAAARQHYALAAAAHARGNASAAPVLELMRQRGVAQGMDTVAALARAHCEAAQWRRATALLASARDAGLVRPVASGDADYARHLSQFLESLTRAAAAVGSRRAVLAVVACVRESYGGGAPPPAPLVRRIVAALEEVDAHDDATAFAAQFQTSDI
Sbjct:    1 MTGGRSSSNGLVGGTGILTVVGHVISFSDGRPAEVLGSEEAYLHHKTTCVPKVLGGTKQQETLLLRVGRGGVKGLKLIKRVFKGVLGPFEETLEVGDFKEGVHECPLPASDVPNTLLSRGRYRCEVSICDASGALLWKLASAFQIVKPPGDGSSSSGDKGGLGSRKSRDSAGGLDHAASQQRVVKTQSQRKPGRTAAAAADGEHSQFEDSVRAMKLFGRQGKWPSVLAELDALHGRVRSGALPPLPVSVYNTAISATSKSGRSNEALALLGTMAKNGAAPDVVSYRGKKLELALSLLDEMDRSNVEPNIVTFNTILTGCGVKGDWRLXXXXXXXXXXXXXXXXXXXXXXXXXXXXREAQADLAAQLLDEMQLKYALRPGRAAYQFALAALKASGEWQRCLQLLADMRAAGTAPDATCYKHAAAAMARAGQLAELELVLRAMEAAXXXXXXXXXXXXXXXXXXXXXXEHAVAYNAAIAAHGRAGDWRGALAMMERMRQAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRGCCGGSTSTSSSGESGGGGADWRVALELLDEARRRGLRPDRGTYLQSMRACMAAAXXXXXXXXXXPPHRVADAAAEGSAKCVQEAPAAAALRLHVEMQAQGITPDGRTMATALAAAALAGDGATAVGLLRRMTRDGCEVGASAYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALVRRMRAHAAGATPDAVALSXXXXXXXXXXXXXXXXXXXXWAREDGVALAPQLALALLRCLAAAPPDAAADALAARCADAAPALVDAVLGQRPASGAAAATQAAAVLGRAGRWAEAVALLARLEAAGAAADXXAYAAVISACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDWRAASELAREAAAAGSDGRGARVWNAALAACARAGEADGALALLAESGTTADAMSHVLAARALRRRGDAQRALATLERAPAPLVAECVDLRIALLGQLVRTTEALDTLNALKSGQYAFPPGAASYAAAIAAVGGTGDWRLCGALAAEARQAGLAPLPRRAYDALLEVYENGARWREALAVLGDMEADGVLVDAAAVVHAARACMAAAQWQQAADVAQRHLXXXXXXXXXXXXXXXXEHHARILGLALKACASGGLGAQALHLLQHCTPPAAAAARQHYALAAAAHARGNASAAPVLELMRQRGVAQGMDTVAALARAHCEAAQWRRATALLASARDAGLVRPVASGDADYARHLSQFLESLTRAAAAVGSRRAVLAVVACVRESYGGGAPPPAPLVRRIVAALEEVDAHDDATAFAAQFQTSDI 1350
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|349909 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CCZ5_9STRA0.000e+0100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 985..1005
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 150..204
NoneNo IPR availablePANTHERPTHR47932:SF44ATPASE EXPRESSION PROTEIN 3coord: 1024..1265
coord: 847..1141
NoneNo IPR availablePANTHERPTHR47932ATPASE EXPRESSION PROTEIN 3coord: 470..793
coord: 247..550
NoneNo IPR availablePANTHERPTHR47932:SF44ATPASE EXPRESSION PROTEIN 3coord: 470..793
coord: 247..550
coord: 246..442
NoneNo IPR availablePANTHERPTHR47932ATPASE EXPRESSION PROTEIN 3coord: 1024..1265
coord: 246..442
coord: 847..1141
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 469..515
e-value: 2.3E-7
score: 30.9
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 295..355
e-value: 3.0E-10
score: 40.0
coord: 640..699
e-value: 0.0018
score: 18.3
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 470..504
e-value: 8.9E-6
score: 23.6
coord: 878..911
e-value: 2.3E-7
score: 28.6
coord: 505..538
e-value: 1.9E-4
score: 19.4
coord: 310..344
e-value: 9.4E-6
score: 23.5
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 249..277
e-value: 0.022
score: 15.0
coord: 879..907
e-value: 0.0031
score: 17.7
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 308..342
score: 11.366925
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 246..280
score: 9.755614
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 875..909
score: 11.860184
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 687..721
score: 8.747175
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 503..537
score: 10.906551
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 468..502
score: 10.588674
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 846..1012
e-value: 9.8E-26
score: 92.8
coord: 564..820
e-value: 2.4E-30
score: 108.0
coord: 287..463
e-value: 1.2E-31
score: 112.2
coord: 1013..1151
e-value: 9.3E-9
score: 37.1
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 464..558
e-value: 1.1E-22
score: 82.2
coord: 178..286
e-value: 2.8E-7
score: 32.0
IPR024792Rho GDP-dissociation inhibitor domain superfamilyGENE3D2.70.50.30Coagulation Factor XIII, subunit A, domain 1coord: 29..148
e-value: 3.6E-5
score: 25.6
IPR014756Immunoglobulin E-setSUPERFAMILY81296E set domainscoord: 40..147

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_51contigContig_51:638430..646617 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349909mRNA_8825Tribonema minus UTEX_B_3156 mRNAContig_51 638430..646647 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|349909|estExt_Genemark1.C_Ctg_510062 ID=Trimin1|349909|estExt_Genemark1.C_Ctg_510062|Name=jgi.p|Trimin1|349909|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=1351bp
MTGGRSSSNGLVGGTGILTVVGHVISFSDGRPAEVLGSEEAYLHHKTTCV
PKVLGGTKQQETLLLRVGRGGVKGLKLIKRVFKGVLGPFEETLEVGDFKE
GVHECPLPASDVPNTLLSRGRYRCEVSICDASGALLWKLASAFQIVKPPG
DGSSSSGDKGGLGSRKSRDSAGGLDHAASQQRVVKTQSQRKPGRTAAAAA
DGEHSQFEDSVRAMKLFGRQGKWPSVLAELDALHGRVRSGALPPLPVSVY
NTAISATSKSGRSNEALALLGTMAKNGAAPDVVSYRGKKLELALSLLDEM
DRSNVEPNIVTFNTILTGCGVKGDWRLALTLLRQLEQRGLQPDALSYAMA
VRACVREAQADLAAQLLDEMQLKYALRPGRAAYQFALAALKASGEWQRCL
QLLADMRAAGTAPDATCYKHAAAAMARAGQLAELELVLRAMEAAAAAAGV
GGDGGASAAAAAAAAAEHAVAYNAAIAAHGRAGDWRGALAMMERMRQAGA
APDAFSYTSAIAACVRAGETARAMAMLRSMLEHGPPPSVITFNAALRGCC
GGSTSTSSSGESGGGGADWRVALELLDEARRRGLRPDRGTYLQSMRACMA
AAAATAAAPRAAPPHRVADAAAEGSAKCVQEAPAAAALRLHVEMQAQGIT
PDGRTMATALAAAALAGDGATAVGLLRRMTRDGCEVGASAYSSAITACGR
AGLHREALDLLGEARALGLPLDRRAATSALAACAAAGRAHDALALVRRMR
AHAAGATPDAVALSVAAGACTAAQRRDGALLLLRWAREDGVALAPQLALA
LLRCLAAAPPDAAADALAARCADAAPALVDAVLGQRPASGAAAATQAAAV
LGRAGRWAEAVALLARLEAAGAAADAQAYAAVISACGAAGRREEALGVWR
DMRARGVAPDAAAFSAVAALHAAAGDWRAASELAREAAAAGSDGRGARVW
NAALAACARAGEADGALALLAESGTTADAMSHVLAARALRRRGDAQRALA
TLERAPAPLVAECVDLRIALLGQLVRTTEALDTLNALKSGQYAFPPGAAS
YAAAIAAVGGTGDWRLCGALAAEARQAGLAPLPRRAYDALLEVYENGARW
REALAVLGDMEADGVLVDAAAVVHAARACMAAAQWQQAADVAQRHLLSGG
GGGGGDGGAAAPEHHARILGLALKACASGGLGAQALHLLQHCTPPAAAAA
RQHYALAAAAHARGNASAAPVLELMRQRGVAQGMDTVAALARAHCEAAQW
RRATALLASARDAGLVRPVASGDADYARHLSQFLESLTRAAAAVGSRRAV
LAVVACVRESYGGGAPPPAPLVRRIVAALEEVDAHDDATAFAAQFQTSDI
*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf
IPR024792RhoGDI_dom_sf
IPR014756Ig_E-set