mRNA_8811 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|349902
Unique NamemRNA_8811
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|349902 vs. uniprot
Match: A0A835YRW3_9STRA (Protein MCM10 homolog n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRW3_9STRA)

HSP 1 Score: 1100 bits (2845), Expect = 0.000e+0
Identity = 591/591 (100.00%), Postives = 591/591 (100.00%), Query Frame = 1 
Query:    1 MERLSGIRVNKPTLVDEPSLEALRQGYKFFKLDTLPSIARQALESTDPMHAWATVGVLVRKSQQRDTSSGKPFVKWGLSGLAAGSKESTLLLSKDALSSHWSICEGSVLMLLGAHALPKQEQSSAGDPLVFAADASWQVVRIGMSSDYAVCGGTKANGARCTLAVNKSVSSYCSYHASQGIPGKRGSKAGVAGTSRSGGGGGMQQQCRVLQRQGANVQHGALGCMASLGAAADALGARASAGGQGRSGTNPMLANRSNTQVVPHKATVKKASASSEAGGSGDVLGSMLGDSSAARAKSGQQATKITSNSSSTSGXXXXXXXXXXXXDSSGCSAEGDRMDGRVVVPRESHLFSQPRRGPLLQQSHGGPTEMVSAELASQIREQQILGAQAVLAEKAKHNTMLARPLGTIAAAGKRPLPRDLQRRGTVQPTSSLAKRIKGMSATELAVLETRKSAFADGAADLSYQRTEAALDRLEQKDVAMQQLEECLEMKVKAYKCGVCNTLQERRGCPRGDRHLALIATVSVTKRFWQCQGCGFRTSSLGRQLCPAESCEKCRKDKWVRCGAYRGRTTESVATKSAVPVLSEDTEYGRHK 1773
            MERLSGIRVNKPTLVDEPSLEALRQGYKFFKLDTLPSIARQALESTDPMHAWATVGVLVRKSQQRDTSSGKPFVKWGLSGLAAGSKESTLLLSKDALSSHWSICEGSVLMLLGAHALPKQEQSSAGDPLVFAADASWQVVRIGMSSDYAVCGGTKANGARCTLAVNKSVSSYCSYHASQGIPGKRGSKAGVAGTSRSGGGGGMQQQCRVLQRQGANVQHGALGCMASLGAAADALGARASAGGQGRSGTNPMLANRSNTQVVPHKATVKKASASSEAGGSGDVLGSMLGDSSAARAKSGQQATKITSNSSSTSGXXXXXXXXXXXXDSSGCSAEGDRMDGRVVVPRESHLFSQPRRGPLLQQSHGGPTEMVSAELASQIREQQILGAQAVLAEKAKHNTMLARPLGTIAAAGKRPLPRDLQRRGTVQPTSSLAKRIKGMSATELAVLETRKSAFADGAADLSYQRTEAALDRLEQKDVAMQQLEECLEMKVKAYKCGVCNTLQERRGCPRGDRHLALIATVSVTKRFWQCQGCGFRTSSLGRQLCPAESCEKCRKDKWVRCGAYRGRTTESVATKSAVPVLSEDTEYGRHK
Sbjct:    1 MERLSGIRVNKPTLVDEPSLEALRQGYKFFKLDTLPSIARQALESTDPMHAWATVGVLVRKSQQRDTSSGKPFVKWGLSGLAAGSKESTLLLSKDALSSHWSICEGSVLMLLGAHALPKQEQSSAGDPLVFAADASWQVVRIGMSSDYAVCGGTKANGARCTLAVNKSVSSYCSYHASQGIPGKRGSKAGVAGTSRSGGGGGMQQQCRVLQRQGANVQHGALGCMASLGAAADALGARASAGGQGRSGTNPMLANRSNTQVVPHKATVKKASASSEAGGSGDVLGSMLGDSSAARAKSGQQATKITSNSSSTSGXXXXXXXXXXXXDSSGCSAEGDRMDGRVVVPRESHLFSQPRRGPLLQQSHGGPTEMVSAELASQIREQQILGAQAVLAEKAKHNTMLARPLGTIAAAGKRPLPRDLQRRGTVQPTSSLAKRIKGMSATELAVLETRKSAFADGAADLSYQRTEAALDRLEQKDVAMQQLEECLEMKVKAYKCGVCNTLQERRGCPRGDRHLALIATVSVTKRFWQCQGCGFRTSSLGRQLCPAESCEKCRKDKWVRCGAYRGRTTESVATKSAVPVLSEDTEYGRHK 591
[Close]
BLAST of jgi.p|Trimin1|349902 vs. uniprot
Match: A0A6H5KS36_9PHAE (Protein MCM10 homolog n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS36_9PHAE)

HSP 1 Score: 137 bits (344), Expect = 4.300e-30
Identity = 88/232 (37.93%), Postives = 124/232 (53.45%), Query Frame = 1 
Query:    4 ERLSGIRVNKPTLVDEPSLEALRQGYKFFKLDTLPSIARQALESTDPMHAWATVGVLVRKSQQRDTSSGKPFVKWGLSGLAAGSKESTLLLSKDALSSHWSICEGSVLMLLGAHALPKQEQSSAGDP--LVFAADASWQVVRIGMSSDYAVCGGTKANGARCTLAVNKSVSS-YCSYHASQGIPGKRGSKAGVAGTSRSGGGGGMQQQCRVLQRQGANVQHGALGCMASLGA 690
            E  SG+RV    L  E     +R G K  +LD+L ++  +ALES DP  AWA VGVLV KS +R  ++G  F  W LS L+    E +L L ++AL SHW++CEG+++ ++GA  LP +       P  L F+ D+ WQV RIGMS DY +C G + +G  CT+ VNK+    +C +H              VA  +R+      Q++  V  +   N Q  AL   A LGA
Sbjct:   97 EAFSGLRVRNRLLSAEDMRVRMR-GRKVHRLDSLRTVPPRALESQDPADAWAAVGVLVSKSPRRQAANGGSFSVWTLSDLSRRENEVSLFLFQEALGSHWTVCEGTLIAVVGAKVLPDKGGDGGNAPQRLAFSVDSPWQVNRIGMSMDYGLCKGKRKDGKPCTMPVNKTEGGGFCEFHV-------------VAAFNRA------QRKAPVGNKTKGNTQQPALSMSAKLGA 308
[Close]
BLAST of jgi.p|Trimin1|349902 vs. uniprot
Match: D8LM23_ECTSI (Protein MCM10 homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM23_ECTSI)

HSP 1 Score: 130 bits (326), Expect = 9.360e-29
Identity = 67/155 (43.23%), Postives = 96/155 (61.94%), Query Frame = 1 
Query:   73 QGYKFFKLDTLPSIARQALESTDPMHAWATVGVLVRKSQQRDTSSGKPFVKWGLSGLAAGSKESTLLLSKDALSSHWSICEGSVLMLLGAHALPKQEQSSAGDP--LVFAADASWQVVRIGMSSDYAVCGGTKANGARCTLAVNKSVSS-YCSYH 528
            +G K  +LD L ++  +ALES DP  AWA VGVLV KS +R  ++G  F  W LS L+    E +L L ++AL SHW++CEG+++ ++GA  LP +       P  L F+ D+ WQV RIGMS DY +C G + +G  CT+ VNK+    +C +H
Sbjct:    6 RGRKVHRLDALRAVPPRALESQDPADAWAAVGVLVSKSPRRQAANGGSFSVWTLSDLSRRENEVSLFLFQEALGSHWTVCEGTLIAVVGAKVLPDKGGGGGNAPQRLAFSVDSPWQVNRIGMSMDYGLCKGKRKDGKPCTMPVNKTEGGGFCEFH 160
[Close]
BLAST of jgi.p|Trimin1|349902 vs. uniprot
Match: A0A8J4F9L6_9CHLO (zf-primase domain-containing protein n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4F9L6_9CHLO)

HSP 1 Score: 90.1 bits (222), Expect = 1.490e-15
Identity = 62/194 (31.96%), Postives = 94/194 (48.45%), Query Frame = 1 
Query:    4 ERLSGIRVNKPTLVDEPSLEALRQGYKFFKLDTLPSIARQALESTDPMHAWATVGVLVRKSQQRDTSSGKPFVKWGLSGLAAGSKESTLLLSKDALSSHWSICEGSVLMLLGAHALPKQEQSSAGDPLVFAADASWQVVRIGMSSDYAVCGGTKANGARCTLAVNKSVSSYCSYHASQGIPGKRGSKAGVAGTS 585
            + +SG RV+KP +      E L     +  L  +         S D    WAT+ VLV K Q      G P+ +W LS LA   K+ TL L + A S H+   EGS+L+L       ++++   G       D    + R GMS+D+ +C GT+ +G RCT+ +NKS   YC YHA   +     +++ +AG +
Sbjct:   98 DSISGFRVSKPVIGSLVLKERLTDDCVYISLKDISP-------SRDLAGRWATIAVLVSKVQATGRD-GSPYSRWTLSDLAG--KQVTLFLWRKAASEHYRELEGSLLLLWSPQV--RRDEGGGGGGYSLHIDKPEMLQRPGMSTDFGLCRGTRKDGNRCTIPINKSSCEYCPYHAQAALRALASNRSDMAGAN 279
[Close]
BLAST of jgi.p|Trimin1|349902 vs. uniprot
Match: A0A2G8L7E6_STIJA (Protein MCM10 homolog n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8L7E6_STIJA)

HSP 1 Score: 91.3 bits (225), Expect = 1.870e-15
Identity = 57/176 (32.39%), Postives = 92/176 (52.27%), Query Frame = 1 
Query:    1 MERLSGIRVNKPTLVDEPSLEALRQGYKFFKLDTLPSIARQALESTDPMHAWATVGVLVRKSQQRDTSSGKPFVKWGLSGLAAGSKESTLLLSKDALSSHWSICEGSVLMLLGAHALPKQEQSSAGDPLVFAADASWQVVRIGMSSDYAVCGGTKANGARCTLAVNKSVSSYCSYH 528
            +E  S IRV+ P +V   +L+   Q  K  +L    SI ++ ++  D    W T+GV++ KS  + + +GK F  W L+ L+      +L L   +   HW   EG+V+ LL A  +P ++ S   D +  + D   +++ +G S D   C G+K +G RCT+ VNKS   +C YH
Sbjct:  186 VEYYSKIRVSNP-VVSMSALKVKMQQRKMLRL----SILKRHVKGVDVEGDWVTIGVIISKSTPKTSKTGKQFSIWKLNDLSRNCPVVSLFLFGKSHEDHWKTMEGTVVGLLNAKVMPSKDGS---DDVSLSVDNPQKLLVLGKSKDMGWCKGSKKDGGRCTMFVNKSECEWCDYH 353
[Close]
BLAST of jgi.p|Trimin1|349902 vs. uniprot
Match: A0A8J4GBG6_9CHLO (zf-primase domain-containing protein (Fragment) n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4GBG6_9CHLO)

HSP 1 Score: 88.6 bits (218), Expect = 4.430e-15
Identity = 65/196 (33.16%), Postives = 95/196 (48.47%), Query Frame = 1 
Query:    4 ERLSGIRVNKPTLVDEPSLEALRQGYKFFKLDTLPSIARQALESTDPMHAWATVGVLVRKSQQRDTSSGKPFVKWGLSGLAAGSKESTLLLSKDALSSHWSICEGSVLMLLGAHALPKQE--QSSAGDPLVFAADASWQVVRIGMSSDYAVCGGTKANGARCTLAVNKSVSSYCSYHASQGIPGKRGSKAGVAGTS 585
            + +SG RV+KP +      + L     +  L  +         S D    WAT+ VLV K Q      G P+ +W LS LA   K+ TL L + A S H+   EGS LMLL +  + + E    S G       D    + R GMS+D+ +C GT+ +G RCT+ +NKS   YC YHA   +     +++ +AG +
Sbjct:   94 DSISGFRVSKPVIGSLVLKDRLTDDCVYISLKDISP-------SRDLAGRWATIAVLVSKVQATGRD-GSPYSRWTLSDLAG--KQVTLFLWRKAASEHYKELEGS-LMLLWSPQVRRDEGGSGSGGAGYSLHIDKPEMLQRPGMSADFGLCRGTRKDGQRCTIPINKSTCEYCPYHAQAALRALSSNRSDMAGAN 278
[Close]
BLAST of jgi.p|Trimin1|349902 vs. uniprot
Match: D8TVJ4_VOLCA (Protein MCM10 homolog n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8TVJ4_VOLCA)

HSP 1 Score: 86.7 bits (213), Expect = 7.540e-14
Identity = 63/202 (31.19%), Postives = 95/202 (47.03%), Query Frame = 1 
Query:    4 ERLSGIRVNKPTLVDEPSLEALRQGYKFFKLDTLPSIARQALESTDPMHAWATVGVLVRKSQQRDTSSGKPFVKWGLSGLAAGSKESTLLLSKDALSSHWSICEGSVLMLLGAHALPKQEQSSAGDPLVFAADASWQV--------VRIGMSSDYAVCGGTKANGARCTLAVNKSVSSYCSYHASQGIPGKRGSKAGVAGTS 585
            + +SG RV+KP +      E L     +  L  +         S +    WAT+ VLV K Q      G P+ +WGLS LA   K+ +L L + A S H+   EGSVL+L      P+  +   G        A + +         R GMS+D+ +C GT+ +G RCT+ +NKS   YC YHA   +     +++ +AG +
Sbjct:  714 DSISGFRVSKPVIGSLVLRERLTDDCVYIGLKDISP-------SRELAGRWATMAVLVSKVQATGRD-GSPYCRWGLSDLAG--KQVSLFLWRKAASEHYKESEGSVLLLWS----PQVRRDEGGXXXXXXXXAGYSLHIDKPEMLQRPGMSADFGLCRGTRKDGQRCTMPINKSTCEYCPYHAQAALRALSSNRSDMAGAN 901
[Close]
BLAST of jgi.p|Trimin1|349902 vs. uniprot
Match: A0A250XNI6_9CHLO (Protein MCM10 homolog n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XNI6_9CHLO)

HSP 1 Score: 76.3 bits (186), Expect = 1.080e-10
Identity = 63/181 (34.81%), Postives = 83/181 (45.86%), Query Frame = 1 
Query:    4 ERLSGIRVNKPTLVDEPSLEALRQGY-KFFKLDTLP-SIARQALESTDPMHAWATVGVLVRKS--QQRDTSSGKPFVKWGLSGLAAGSKESTLLLSKDALSSHWSICEGSVLMLLGAHALPKQEQSSAGDP-LVFAADASWQVVRIGMSSDYAVCGGTKANGARCTLAVNKSVSSYCSYHA 531
            E+LSG+RV+ P +      + L  G   F KL  L  SI           H W TV +L  KS  + RD SS   + +W ++   +    +TL L   A    +  CEGSV +L  A    +      G P      D   QV RIG S D   C GTK +G RC++ VN+S   YC YHA
Sbjct:  105 EKLSGLRVSHPVVGSLVVRDRLSDGGGPFMKLSQLSCSIGPPTSSLKGSPHVWTTVVILGSKSACEGRDGSS---YGRWQVTDFTS---TTTLFLFGQAQKELYKECEGSVYILYNAKYSKESGGGGYGRPGFSLTVDKPQQVQRIGSSPDLGKCSGTKKDGTRCSVPVNRSECEYCIYHA 279
[Close]
BLAST of jgi.p|Trimin1|349902 vs. uniprot
Match: A0A8J9REZ1_9CHLO (Probable protein MCM10 homolog at N-terminal half n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9REZ1_9CHLO)

HSP 1 Score: 72.4 bits (176), Expect = 1.730e-9
Identity = 57/189 (30.16%), Postives = 92/189 (48.68%), Query Frame = 1 
Query:    1 MERLSGIRVNKPTLVDEPSLEALRQGYKFFKLDTLPSIARQALESTDPMHAWATVGVLVRKSQQRDTSSGKPFVKWGLSGLAAGSKESTLLLSKDALSSHWSICEGSVLMLLGAHALPKQEQSSAGDPLVFAADASWQVVRIGMSSDYAVCGGTKANGARCTLAVNKSVSSYCSYHA---SQGIPGKRG 558
            +E+ SG+R+          L    +     +   LP + R+ + + D    WATVGVLV KS+   +S G  + +W LS L   +   T+ L  DA   ++   EGSV+ +  A A      S+  + +    + S  ++++G SSD+A+CG  K +G +C   VN S   +C +H    S+ I G RG
Sbjct:  138 VEKHSGLRMKNVAF----HLIVFNERVSHLQFVRLPRV-RERVNAADNAGPWATVGVLVEKSKPCVSSKGDMYSRWKLSDLDGTTV--TMFLFGDAHQDNFRESEGSVVAISNAAA----GSSNRKEDVCLKVEESTSILKLGTSSDFALCGSRKRDGTKCRNPVNISKCRFCDHHVQTESKRINGTRG 315
[Close]
BLAST of jgi.p|Trimin1|349902 vs. uniprot
Match: A0A7J7Q6T9_9CHLO (Protein MCM10 homolog n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7Q6T9_9CHLO)

HSP 1 Score: 72.0 bits (175), Expect = 2.220e-9
Identity = 53/141 (37.59%), Postives = 76/141 (53.90%), Query Frame = 1 
Query: 1372 AADLSYQRTEAAL-DRLEQKDVAMQQLEECLEMKVKAYKCGVCNTLQERRGCPRGDRHLALIATVSVTKRFWQCQGCGFRTSSLGRQLCPAESCEKCRKDKWVR---CGAYRGRTTESVATKSAV-PVLSEDTEYGRHK*H 1779
            AAD ++ R    L D+ EQKD   QQLE   +++V A++C  CN L E+R   RG      +  V VTKR+W C+ CG+R ++L R++ P++ C KCR D  V      A  G   + V  ++AV P+ S D    R   H
Sbjct:  802 AADAAHDRLLGKLLDQYEQKDQLAQQLEGITKLQVTAFECRTCNALTEKR---RGSCSGHDVVAVRVTKRWWICEACGWRVTTL-REVMPSKRCSKCR-DPGVLFRPTSACAGSKPQLVNPEAAVNPMASRDGMMARGAEH 937
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|349902 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
A0A835YRW3_9STRA0.000e+0100.00Protein MCM10 homolog n=1 Tax=Tribonema minus TaxI... [more]
A0A6H5KS36_9PHAE4.300e-3037.93Protein MCM10 homolog n=1 Tax=Ectocarpus sp. CCAP ... [more]
D8LM23_ECTSI9.360e-2943.23Protein MCM10 homolog n=1 Tax=Ectocarpus siliculos... [more]
A0A8J4F9L6_9CHLO1.490e-1531.96zf-primase domain-containing protein n=1 Tax=Volvo... [more]
A0A2G8L7E6_STIJA1.870e-1532.39Protein MCM10 homolog n=1 Tax=Stichopus japonicus ... [more]
A0A8J4GBG6_9CHLO4.430e-1533.16zf-primase domain-containing protein (Fragment) n=... [more]
D8TVJ4_VOLCA7.540e-1431.19Protein MCM10 homolog n=1 Tax=Volvox carteri f. na... [more]
A0A250XNI6_9CHLO1.080e-1034.81Protein MCM10 homolog n=1 Tax=Chlamydomonas eustig... [more]
A0A8J9REZ1_9CHLO1.730e-930.16Probable protein MCM10 homolog at N-terminal half ... [more]
A0A7J7Q6T9_9CHLO2.220e-937.59Protein MCM10 homolog n=1 Tax=Scenedesmus sp. NREL... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_51contigContig_51:550541..553997 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|349902|estExt_Genemark1.C_Ctg_510051
BRITEko00000,ko03032
KEGG koko:K10736
GOsGO:0000228,GO:0000724,GO:0000725,GO:0000727,GO:0000785,GO:0000790,GO:0001932,GO:0001934,GO:0003674,GO:0003676,GO:0003677,GO:0003688,GO:0003690,GO:0003697,GO:0003824,GO:0003896,GO:0003899,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006269,GO:0006270,GO:0006271,GO:0006275,GO:0006281,GO:0006302,GO:0006310,GO:0006325,GO:0006342,GO:0006348,GO:0006355,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010562,GO:0010604,GO:0010605,GO:0010629,GO:0016043,GO:0016070,GO:0016458,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019219,GO:0019220,GO:0019222,GO:0019438,GO:0022616,GO:0030466,GO:0031298,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031399,GO:0031401,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032774,GO:0032991,GO:0033554,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0035861,GO:0040029,GO:0042325,GO:0042327,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0043596,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044877,GO:0045740,GO:0045814,GO:0045892,GO:0045934,GO:0045935,GO:0045937,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051246,GO:0051247,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051338,GO:0051347,GO:0051716,GO:0060255,GO:0065007,GO:0065009,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090329,GO:0090734,GO:0097159,GO:0097747,GO:0140098,GO:1900262,GO:1900264,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903932,GO:1903934,GO:1904931,GO:1990837,GO:2000105,GO:2000112,GO:2000113,GO:2000278,GO:2000573,GO:2001141
Preferred nameMCM10
DescriptionDNA replication origin binding
COG categoryT
Max annot lvl2759|Eukaryota
EggNOG OGsKOG3056@1|root,KOG3056@2759|Eukaryota
Evalue3.93e-40
Seed ortholog2880.D8LM23
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionReplication factor Mcm10
Ec32 orthologEc-14_002590.1
TranscriptId350224
TrackFilteredModels1
ProteinId349902
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349902gene_8811Tribonema minus UTEX_B_3156 geneContig_51 550541..553997 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349902Trimin1|349902|estExt_Genemark1.C_Ctg_510051Tribonema minus UTEX_B_3156 polypeptideContig_51 550570..553997 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_8811_5exon_8811_5Tribonema minus UTEX_B_3156 exonContig_51 550541..551034 -
exon_8811_4exon_8811_4Tribonema minus UTEX_B_3156 exonContig_51 551535..551711 -
exon_8811_3exon_8811_3Tribonema minus UTEX_B_3156 exonContig_51 552085..552438 -
exon_8811_2exon_8811_2Tribonema minus UTEX_B_3156 exonContig_51 552649..552753 -
exon_8811_1exon_8811_1Tribonema minus UTEX_B_3156 exonContig_51 553323..553997 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_8811UTR3_8811Tribonema minus UTEX_B_3156 three_prime_UTRContig_51 550541..550569 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_8811CDS_8811Tribonema minus UTEX_B_3156 CDSContig_51 553323..553997 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_8811 ID=mRNA_8811|Name=jgi.p|Trimin1|349902|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1805bp|location=Sequence derived from alignment at Contig_51:550541..553997- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGCGCCTGTCAGGCATCAGGGTCAACAAGCCCACGCTGGTGGATGA
GCCATCCCTGGAGGCCCTCAGGCAGGGCTACAAGTTCTTCAAGCTGGACA
CCCTCCCATCTATAGCGCGTCAGGCCCTGGAGAGCACAGATCCCATGCAC
GCATGGGCCACAGTGGGTGTCCTGGTACGCAAATCGCAGCAGAGAGACAC
CTCCAGCGGCAAGCCCTTCGTCAAGTGGGGCCTCAGCGGCCTGGCGGCGG
GAAGCAAAGAAAGCACGCTGCTACTCTCCAAAGACGCACTCTCCAGCCAC
TGGTCCATCTGCGAGGGCTCTGTTCTGATGCTGCTGGGAGCTCATGCCCT
GCCCAAGCAGGAGCAGAGCAGCGCAGGCGACCCCCTCGTCTTCGCCGCAG
ACGCCAGCTGGCAGGTGGTGCGGATAGGCATGTCGTCAGACTACGCCGTT
TGCGGCGGCACCAAGGCCAATGGCGCGCGCTGCACGCTGGCAGTCAACAA
GTCGGTGTCCTCGTACTGTTCTTACCACGCGAGCCAGGGCATCCCGGGCA
AGCGCGGCAGCAAAGCGGGCGTCGCTGGCACCAGCAGGAGCGGCGGCGGC
GGCGGCATGCAGCAGCAGTGCCGCGTGCTGCAGCGGCAGGGCGCCAATGT
GCAGCACGGTGCTCTGGGCTGCATGGCATCGCTAGGTGCTGCAGCAGATG
CACTTGGTGCGAGGGCATCAGCGGGCGGCCAGGGGCGCAGCGGCACCAAT
CCCATGCTGGCGAATCGGAGCAACACCCAGGTGGTGCCTCATAAGGCCAC
TGTGAAGAAAGCAAGCGCTAGCAGTGAAGCAGGCGGCAGCGGCGACGTGC
TTGGCAGCATGCTAGGGGACAGCAGTGCCGCTCGGGCAAAAAGCGGGCAA
CAAGCCACGAAAATCACCAGCAATTCGTCCAGCACCAGCGGCAGCGGCGG
CGGTGCCACCAGGGGCAGTGGAGGCGGCGACAGCAGCGGATGCTCAGCAG
AGGGGGACAGGATGGATGGACGTGTGGTGGTGCCACGGGAGTCGCACCTG
TTTTCACAGCCCAGGCGGGGGCCGCTGCTGCAGCAGTCACACGGCGGGCC
CACAGAGATGGTGTCTGCGGAGCTCGCGTCGCAGATCAGGGAGCAGCAGA
TTCTCGGTGCGCAGGCGGTGCTGGCTGAGAAGGCGAAGCACAACACAATG
CTCGCAAGGCCGCTTGGCACGATTGCTGCTGCTGGCAAGAGGCCTTTGCC
TAGGGACTTGCAGCGCAGGGGCACTGTGCAGCCAACCAGCAGCCTGGCCA
AGCGCATCAAGGGCATGAGCGCCACGGAGCTGGCGGTGCTGGAGACCCGG
AAGTCCGCCTTTGCGGACGGGGCCGCGGACCTGTCGTACCAGCGCACGGA
GGCAGCGCTCGACAGGCTGGAGCAGAAGGACGTCGCCATGCAGCAGCTCG
AGGAGTGCCTCGAGATGAAGGTCAAGGCCTACAAGTGCGGCGTCTGCAAC
ACGCTGCAAGAGAGGCGGGGGTGCCCGCGCGGCGACAGGCACCTCGCCCT
CATCGCCACGGTGTCGGTGACCAAGCGCTTCTGGCAGTGCCAGGGGTGCG
GCTTTCGTACCAGCTCGCTGGGGCGGCAGCTGTGCCCCGCCGAGAGCTGC
GAGAAGTGCAGGAAGGACAAGTGGGTGCGGTGCGGCGCTTACAGGGGTCG
GACAACAGAGTCGGTCGCGACGAAGTCGGCGGTTCCGGTGCTCTCGGAAG
ACACGGAGTACGGCCGGCACAAGTAGCACTTGCGCTAATGCCAGGTATTG
ATGCA
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protein sequence of jgi.p|Trimin1|349902

>Trimin1|349902|estExt_Genemark1.C_Ctg_510051 ID=Trimin1|349902|estExt_Genemark1.C_Ctg_510051|Name=jgi.p|Trimin1|349902|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=592bp
MERLSGIRVNKPTLVDEPSLEALRQGYKFFKLDTLPSIARQALESTDPMH
AWATVGVLVRKSQQRDTSSGKPFVKWGLSGLAAGSKESTLLLSKDALSSH
WSICEGSVLMLLGAHALPKQEQSSAGDPLVFAADASWQVVRIGMSSDYAV
CGGTKANGARCTLAVNKSVSSYCSYHASQGIPGKRGSKAGVAGTSRSGGG
GGMQQQCRVLQRQGANVQHGALGCMASLGAAADALGARASAGGQGRSGTN
PMLANRSNTQVVPHKATVKKASASSEAGGSGDVLGSMLGDSSAARAKSGQ
QATKITSNSSSTSGSGGGATRGSGGGDSSGCSAEGDRMDGRVVVPRESHL
FSQPRRGPLLQQSHGGPTEMVSAELASQIREQQILGAQAVLAEKAKHNTM
LARPLGTIAAAGKRPLPRDLQRRGTVQPTSSLAKRIKGMSATELAVLETR
KSAFADGAADLSYQRTEAALDRLEQKDVAMQQLEECLEMKVKAYKCGVCN
TLQERRGCPRGDRHLALIATVSVTKRFWQCQGCGFRTSSLGRQLCPAESC
EKCRKDKWVRCGAYRGRTTESVATKSAVPVLSEDTEYGRHK*
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mRNA from alignment at Contig_51:550541..553997-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8811 ID=mRNA_8811|Name=jgi.p|Trimin1|349902|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3457bp|location=Sequence derived from alignment at Contig_51:550541..553997- (Tribonema minus UTEX_B_3156 )
ATGGAGCGCCTGTCAGGCATCAGGGTCAACAAGCCCACGCTGGTGGATGA
GCCATCCCTGGAGGCCCTCAGGCAGGGCTACAAGTTCTTCAAGCTGGACA
CCCTCCCATCTATAGCGCGTCAGGCCCTGGAGAGCACAGATCCCATGCAC
GCATGGGCCACAGTGGGTGTCCTGGTACGCAAATCGCAGCAGAGAGACAC
CTCCAGCGGCAAGCCCTTCGTCAAGTGGGGCCTCAGCGGCCTGGCGGCGG
GAAGCAAAGAAAGCACGCTGCTACTCTCCAAAGACGCACTCTCCAGCCAC
TGGTCCATCTGCGAGGGCTCTGTTCTGATGCTGCTGGGAGCTCATGCCCT
GCCCAAGCAGGAGCAGAGCAGCGCAGGCGACCCCCTCGTCTTCGCCGCAG
ACGCCAGCTGGCAGGTGGTGCGGATAGGCATGTCGTCAGACTACGCCGTT
TGCGGCGGCACCAAGGCCAATGGCGCGCGCTGCACGCTGGCAGTCAACAA
GTCGGTGTCCTCGTACTGTTCTTACCACGCGAGCCAGGGCATCCCGGGCA
AGCGCGGCAGCAAAGCGGGCGTCGCTGGCACCAGCAGGAGCGGCGGCGGC
GGCGGCATGCAGCAGCAGTGCCGCGTGCTGCAGCGGCAGGGCGCCAATGT
GCAGCACGGTGCTCTGGGCTGCATGGTGCGTACAGCAGGCCATCACCAGC
AGCAGCAGCAGCAGCAGCTACTGCAGGCAAGAGGCGGTGCCAGGCAGCCT
GCAGCACCACAGGCCGCACAGCGCGGTACAAACAGCCTCCTTGCAGCTGG
ACGCCCACCGCTGTCTACACGCGCCTCGATGATGGGAGGTCGCAGTTCCC
TAGGCAGCAATCAGGTGAGCCGGAAGTAGTACACTTGGCTCACACCTGCA
GGTGTTGCTCACCTATGGTCACGTGGTCTCAATATCATAGAGATCGACAT
CATAGTAAGCGAAGGTAGCAGCACTGTTGTCATGCTGTCATACCATGCTC
AGGCAGCTGGCATACTGACACTGTGCTGCATGGGGGCTGCAGCAAGTGCT
GATTCACAAGTCGCTCAGCGTCAGCTACAAGCTGCTTGTTGCGTCATGTG
TGTCAGTCTTCAGCTTGTGCCATGTTGACATGTCATTGCGGTATGCACAT
GTTCTTGACCATTTCAAGCATGTAGATGCTGCCAGTGATATGAAAACTGA
TGGAGGCCAGTTTTCCTGCAATGCACTTGTAAAATTGTTTGCAGGCATCG
CTAGGTGCTGCAGCAGATGCACTTGGTGCGAGGGCATCAGCGGGCGGCCA
GGGGCGCAGCGGCACCAATCCCATGCTGGCGAATCGGAGCAACACCCAGG
TATGGTCACTTCAGCGCCGCTTCAAGAGGGTGCAACACCTCCTTAACACC
GAGGCTTCCATCAATTCACTGTTGATTGTACATGCAACGTTACCCTGCAA
AACAGAAGGTGTAACTGGAGGTCATAGCTGGTGCGGACAAACTCAACCAG
ATGTCCACTGCTCAAGCGCGCCTTTGGCTCACCGATCTCGCCATTCGATC
ACTCTGCAGGTGGTGCCTCATAAGGCCACTGTGAAGAAAGCAAGCGCTAG
CAGTGAAGCAGGCGGCAGCGGCGACGTGCTTGGCAGCATGCTAGGGGACA
GCAGTGCCGCTCGGGCAAAAAGCGGGCAACAAGCCACGAAAATCACCAGC
AATTCGTCCAGCACCAGCGGCAGCGGCGGCGGTGCCACCAGGGGCAGTGG
AGGCGGCGACAGCAGCGGATGCTCAGCAGAGGGGGACAGGATGGATGGAC
GTGTGGTGGTGCCACGGGAGTCGCACCTGTTTTCACAGCCCAGGCGGGGG
CCGCTGCTGCAGCAGTCACACGGCGGGCCCACAGAGATGGTGTCTGCGGA
GCTCGCGTCGCAGGTATGTACGTGCTTCAACTTGAAGTAGTTGAGTGTGG
TTTCGCGCCGGTACAGTAGCCGCGTTCTGAACGCCTGTGCGCTTCGCATG
CGTGCATGTCACATTACATTACATCAGGAGGCGTGCACCCTTCTGCCTTC
AACTCAACAGCTCTAGTATCTGCCACTGCCATTTGAAAGCTACGTTTAAG
TGAGCATTGTGCTGAGTGTCCCTATGTCATGCCAGCGGGGCTTGGCCTTC
TAAAGGCGCCGCGTAGTGAGTACAGGTTACACGATCATGCCAAGCCATGT
ATGCATCTTGTCGAGATTTCCAACAGCTTTAGCGTGCAGACCCCAGCAAC
ATTGCAAGCGCTTTTTAAATGCTGTTGTTGCTGCAGATCAGGGAGCAGCA
GATTCTCGGTGCGCAGGCGGTGCTGGCTGAGAAGGCGAAGCACAACACAA
TGCTCGCAAGGCCGCTTGGCACGATTGCTGCTGCTGGCAAGAGGCCTTTG
CCTAGGGACTTGCAGCGCAGGGGCACTGTGCAGCCAACCAGCAGCCTGGC
CAAGCGCATCAAGGTGAGTGTCGAGCAATGTCACTTGTGCAATGAGGAAG
TGCTTACTTGTCGTCTGCTCCCCTCACTGGGTACATGAAGCGAGCAGCGC
ATCAACGCGCGCCGGGGTTGCCCATGCACTGCGCAGCTGTGCTTATTCAG
CAAACTTATCCTACCCCCATTGCTCAGCAGTACCTGTGATGACTTCTCGC
GTAGTATGAGTGCCACCGACACGGCGCAGTTTACCGTCAGCGTAGTTGCT
GTCTGCTCCTCTCTCCGGGTACATCAAGCGAGCAGCCTGGCCAGGCGCAT
CACCGCGCGTTGGGGTTGCCGCCCACTGCTCAGTAAATGTTTATTCAACT
CATCCTAACCCATTGCTCAGCAGTACTCTATCAGTACCTGTGATGACTCC
TTGCGCAGTATGAGTGCCACCAACGACGCACAGTCTGATATCAGCCTACT
TGCTGTGCCACCGCGCACACATCTGTGACTTCACCTCGTGCCCCGCCGTT
GCCGTCTGCGCAGGGCATGAGCGCCACGGAGCTGGCGGTGCTGGAGACCC
GGAAGTCCGCCTTTGCGGACGGGGCCGCGGACCTGTCGTACCAGCGCACG
GAGGCAGCGCTCGACAGGCTGGAGCAGAAGGACGTCGCCATGCAGCAGCT
CGAGGAGTGCCTCGAGATGAAGGTCAAGGCCTACAAGTGCGGCGTCTGCA
ACACGCTGCAAGAGAGGCGGGGGTGCCCGCGCGGCGACAGGCACCTCGCC
CTCATCGCCACGGTGTCGGTGACCAAGCGCTTCTGGCAGTGCCAGGGGTG
CGGCTTTCGTACCAGCTCGCTGGGGCGGCAGCTGTGCCCCGCCGAGAGCT
GCGAGAAGTGCAGGAAGGACAAGTGGGTGCGGTGCGGCGCTTACAGGGGT
CGGACAACAGAGTCGGTCGCGACGAAGTCGGCGGTTCCGGTGCTCTCGGA
AGACACGGAGTACGGCCGGCACAAGTAGCACTTGCGCTAATGCCAGGTAT
TGATGCA
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Coding sequence (CDS) from alignment at Contig_51:550541..553997-

>mRNA_8811 ID=mRNA_8811|Name=jgi.p|Trimin1|349902|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1776bp|location=Sequence derived from alignment at Contig_51:550541..553997- (Tribonema minus UTEX_B_3156 )
ATGGAGCGCCTGTCAGGCATCAGGGTCAACAAGCCCACGCTGGTGGATGA
GCCATCCCTGGAGGCCCTCAGGCAGGGCTACAAGTTCTTCAAGCTGGACA
CCCTCCCATCTATAGCGCGTCAGGCCCTGGAGAGCACAGATCCCATGCAC
GCATGGGCCACAGTGGGTGTCCTGGTACGCAAATCGCAGCAGAGAGACAC
CTCCAGCGGCAAGCCCTTCGTCAAGTGGGGCCTCAGCGGCCTGGCGGCGG
GAAGCAAAGAAAGCACGCTGCTACTCTCCAAAGACGCACTCTCCAGCCAC
TGGTCCATCTGCGAGGGCTCTGTTCTGATGCTGCTGGGAGCTCATGCCCT
GCCCAAGCAGGAGCAGAGCAGCGCAGGCGACCCCCTCGTCTTCGCCGCAG
ACGCCAGCTGGCAGGTGGTGCGGATAGGCATGTCGTCAGACTACGCCGTT
TGCGGCGGCACCAAGGCCAATGGCGCGCGCTGCACGCTGGCAGTCAACAA
GTCGGTGTCCTCGTACTGTTCTTACCACGCGAGCCAGGGCATCCCGGGCA
AGCGCGGCAGCAAAGCGGGCGTCGCTGGCACCAGCAGGAGCGGCGGCGGC
GGCGGCATGCAGCAGCAGTGCCGCGTGCTGCAGCGGCAGGGCGCCAATGT
GCAGCACGGTGCTCTGGGCTGCATGGCATCGCTAGGTGCTGCAGCAGATG
CACTTGGTGCGAGGGCATCAGCGGGCGGCCAGGGGCGCAGCGGCACCAAT
CCCATGCTGGCGAATCGGAGCAACACCCAGGTGGTGCCTCATAAGGCCAC
TGTGAAGAAAGCAAGCGCTAGCAGTGAAGCAGGCGGCAGCGGCGACGTGC
TTGGCAGCATGCTAGGGGACAGCAGTGCCGCTCGGGCAAAAAGCGGGCAA
CAAGCCACGAAAATCACCAGCAATTCGTCCAGCACCAGCGGCAGCGGCGG
CGGTGCCACCAGGGGCAGTGGAGGCGGCGACAGCAGCGGATGCTCAGCAG
AGGGGGACAGGATGGATGGACGTGTGGTGGTGCCACGGGAGTCGCACCTG
TTTTCACAGCCCAGGCGGGGGCCGCTGCTGCAGCAGTCACACGGCGGGCC
CACAGAGATGGTGTCTGCGGAGCTCGCGTCGCAGATCAGGGAGCAGCAGA
TTCTCGGTGCGCAGGCGGTGCTGGCTGAGAAGGCGAAGCACAACACAATG
CTCGCAAGGCCGCTTGGCACGATTGCTGCTGCTGGCAAGAGGCCTTTGCC
TAGGGACTTGCAGCGCAGGGGCACTGTGCAGCCAACCAGCAGCCTGGCCA
AGCGCATCAAGGGCATGAGCGCCACGGAGCTGGCGGTGCTGGAGACCCGG
AAGTCCGCCTTTGCGGACGGGGCCGCGGACCTGTCGTACCAGCGCACGGA
GGCAGCGCTCGACAGGCTGGAGCAGAAGGACGTCGCCATGCAGCAGCTCG
AGGAGTGCCTCGAGATGAAGGTCAAGGCCTACAAGTGCGGCGTCTGCAAC
ACGCTGCAAGAGAGGCGGGGGTGCCCGCGCGGCGACAGGCACCTCGCCCT
CATCGCCACGGTGTCGGTGACCAAGCGCTTCTGGCAGTGCCAGGGGTGCG
GCTTTCGTACCAGCTCGCTGGGGCGGCAGCTGTGCCCCGCCGAGAGCTGC
GAGAAGTGCAGGAAGGACAAGTGGGTGCGGTGCGGCGCTTACAGGGGTCG
GACAACAGAGTCGGTCGCGACGAAGTCGGCGGTTCCGGTGCTCTCGGAAG
ACACGGAGTACGGCCGGCACAAGTAG
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