mRNA_8800 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|349894
Unique NamemRNA_8800
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|349894 vs. uniprot
Match: A0A835YZN2_9STRA (HAD-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZN2_9STRA)

HSP 1 Score: 588 bits (1515), Expect = 2.610e-211
Identity = 297/297 (100.00%), Postives = 297/297 (100.00%), Query Frame = 1
Query:    1 MAPGGAGRLVRAGVQELAVPLPPAPKLITFDAEGTLLQLASPKGLILRESLLKAHGYLARLPGPDLFQASHAAYDKALNAATAAQPCYGCGTGVTSHQWWYGVVYDALVETLEAHNIPPSEMVDPVMEELFDELFYETFTGPEAYELRPDAARTLEKLAEWREAGTGPLLGIVTNADERLPTVLLNLGILEVFDFVLTSRQIGSELPARAIFDVALDKAGLTNAAEALHCGDDLERDIGGAAAAGWQSCLIANPPAPQGPQAYTVMGISGLLPRLGLPALSGPVPTTRRRGQFVDGE 891
            MAPGGAGRLVRAGVQELAVPLPPAPKLITFDAEGTLLQLASPKGLILRESLLKAHGYLARLPGPDLFQASHAAYDKALNAATAAQPCYGCGTGVTSHQWWYGVVYDALVETLEAHNIPPSEMVDPVMEELFDELFYETFTGPEAYELRPDAARTLEKLAEWREAGTGPLLGIVTNADERLPTVLLNLGILEVFDFVLTSRQIGSELPARAIFDVALDKAGLTNAAEALHCGDDLERDIGGAAAAGWQSCLIANPPAPQGPQAYTVMGISGLLPRLGLPALSGPVPTTRRRGQFVDGE
Sbjct:    1 MAPGGAGRLVRAGVQELAVPLPPAPKLITFDAEGTLLQLASPKGLILRESLLKAHGYLARLPGPDLFQASHAAYDKALNAATAAQPCYGCGTGVTSHQWWYGVVYDALVETLEAHNIPPSEMVDPVMEELFDELFYETFTGPEAYELRPDAARTLEKLAEWREAGTGPLLGIVTNADERLPTVLLNLGILEVFDFVLTSRQIGSELPARAIFDVALDKAGLTNAAEALHCGDDLERDIGGAAAAGWQSCLIANPPAPQGPQAYTVMGISGLLPRLGLPALSGPVPTTRRRGQFVDGE 297          
BLAST of jgi.p|Trimin1|349894 vs. uniprot
Match: A0A7S2G2K6_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G2K6_9STRA)

HSP 1 Score: 200 bits (508), Expect = 8.140e-58
Identity = 108/259 (41.70%), Postives = 153/259 (59.07%), Query Frame = 1
Query:   49 LAVPLPPAPKLITFDAEGTLLQLASPKGLILRESLLKAHGYLARLPGPDLFQASHAAYDKALNAATAAQPCYGCGTGVTSHQWWYGVVYDALVETLEAHNIPPSEMVDPVMEELFDELFYETFTGPEAYELRPDAARTLEKLAEWREAGTGPLLGIVTNADERLPTVLLNLGILEVFDFVLTSRQIGSELPARAIFDVALDKAGLTNAAEALHCGDDLERDIGGAAAAGWQSCLIANP-----PAPQGPQAYTVMGISG 810
            L  P+   P+LITFDA GTL+QLA P G+  R+ L+K  G   RLP PD+F     A+ +  +A   A PC+GC   +++  WW  VV D   +        PS+++DP+   LFDEL++E FTG + +EL  D    L+KL EW+E G GP LG+++N DERLP +L  LGI + FD ++TS++ G E P R IFD+AL + G+     A+H G+D + D+ GA AAGW +  +  P     PA      +TV+G  G
Sbjct:   83 LPPPITQKPQLITFDATGTLIQLAEPVGMHYRQVLMKHTGI--RLPRPDIFTD---AFKEVYDAKCQASPCFGCSDSISAQDWWASVVRDTYTKVGV-----PSDIIDPLFPLLFDELYHEVFTGTDGWELNADTMMVLDKLKEWQETGDGPRLGVISNFDERLPKLLEALGIADYFDIIITSKECGMEKPCRQIFDIALTRLGIYERDAAVHVGNDYDTDVKGATAAGWNALYVKEPAYTNLPAQTTDTPFTVVGDLG 331          
BLAST of jgi.p|Trimin1|349894 vs. uniprot
Match: A0A7S2STH1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2STH1_9STRA)

HSP 1 Score: 179 bits (455), Expect = 1.040e-49
Identity = 105/250 (42.00%), Postives = 147/250 (58.80%), Query Frame = 1
Query:   34 AGVQELAVPLPP---APKLITFDAEGTLLQLASPKGLILRESLLKAHGYLARLPGPDLFQASHAAYDKALNAATAAQPCYGCGTGVTSHQWWYGVVYDALVETLEAHNIPPSEMVDPVMEELFDELFYETFTGPEAYELRPDAARTLEKLAEWRE--AGTGPL-LGIVTNADERLPTVLLNLGILEVFDFVLTSRQIGSELPARAIFDVALDKAGLTNAAEALHCGDDLERDIGGAAAAGWQSCLIANPP 765
            A VQ+   P PP    P+++TFDA GTL+QL  P G+  RE+LL+A G   RLP PD F A   A+ +   A +   PC+GCG  + S  WWY VV D  ++T       P +++DP++ E+FD L+   F G E +EL   A   L+ L E +E  A   PL LG+++N DERL  +L NLGI   FD VLTS++   E P   IFD+AL + G+ + + A+H GD  ++D+ GAA AGW +  +  PP
Sbjct:   85 ASVQKAWTPGPPKILTPRVVTFDATGTLMQLTEPVGMHYREALLQASGL--RLPSPDHFDA---AFKEVYKAQSEEFPCFGCGAAMPSRDWWYPVVRDTYLKTGV-----PEKILDPLLPEIFDSLYDNVFAGSEGWELNEQAIYVLDTLIELKESRAEDDPLYLGVISNFDERLHKLLDNLGIAHYFDIVLTSKECCVEKPNSPIFDMALSRLGIYDRSRAVHIGDTFDKDVAGAARAGWNAIFVRAPP 324          
BLAST of jgi.p|Trimin1|349894 vs. uniprot
Match: A0A7S2PCP1_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PCP1_9STRA)

HSP 1 Score: 168 bits (425), Expect = 3.840e-45
Identity = 108/292 (36.99%), Postives = 158/292 (54.11%), Query Frame = 1
Query:   64 PPAPKLITFDAEGTLLQLASPKGLILRESLLKAHGYLARLPGPDLFQASHAAYDKALNAATAAQPCYGCGTGVTSHQWWYGVVYD--ALVETLEAHNIPPSEMVDPVMEELFDELFYETFTGPEAYELRPDAARTLEKLAEWREAGTGPLLGIVTNADERLPTVLLNLGILEVFDFVLTSRQIGSELPARAIFDVALDKAGLTNAAEALHCGDDLERDIGGAAAAGWQSCLIA-----NPPAPQGPQA--------YTVMGISGLLPRLGLPALSGPVPTTR---RRGQFVD 885
            P  P+LITFDA  TL+QL S  G+  R  L +A  + +RLP P +F +   A+++A        PC+GCG G+TS +WW        ALVE ++        M  P+ + + + L+ + F   EA+EL+P     L +   WRE G GP L +++N DERL ++L  +G+ + FDFVLTSR+IGSE P R+ F+VA+ +AG+ + +  +H GD  + D+ GA+ AGW S  I      + P    P          + V+ I GL P   L      +PTTR    RG F+D
Sbjct:   86 PNVPQLITFDATDTLIQLKSEVGMTYRLILHEATRFRSRLPTPAVFTS---AFNQAFTETNEKYPCFGCGLGMTSREWWAECTKRTYALVEHIDYERGLRDRMDGPLGDAVAEVLYNQVFASTEAWELKPGVLDALSRFKMWREEG-GPQLAVLSNFDERLHSILDQVGVADAFDFVLTSREIGSEKPNRSAFEVAMSRAGVADPSLCMHVGDGFDSDVVGASNAGWHSVWIPPINGDDVPTNIDPDLMFSMCGDLFAVLDIFGLDPHFRL------IPTTRFVDERGNFMD 367          
BLAST of jgi.p|Trimin1|349894 vs. uniprot
Match: A0A7S1C225_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1C225_9STRA)

HSP 1 Score: 167 bits (424), Expect = 1.100e-44
Identity = 106/233 (45.49%), Postives = 137/233 (58.80%), Query Frame = 1
Query:   76 KLITFDAEGTLLQLASPKGLILRESLLKAHGYLARLPGPDLFQASHAAYDKALNAATAAQPCYGCGTGVTSHQWWYGVVYDA------------LVETLEAHNIPPSEMVDPVMEELFDELFYETFTGPEAYELRPDAARTLEKLAEWREAGTGPLLGIVTNADERLPTVLLNLGILEVFDFVLTSRQIGSELPARAIFDVALDKAGLTNAAEALHCGDDLERDIGGAAAAGW 738
            KLITFDA GTL+++ +  G+  RE+L +A GY+ RLP PDLF A   A+ +A     AA PCYG   G+T  +WW  VV D             LVE LE+ +         V E +F +L+ E FTG EA+EL PDA RTL +LA WRE G GP +GIV+N+D RL  +L  LGI E FDFVLT+   GS  P   +F +AL +A + +   A H G+D  +D   AA AGW
Sbjct:  129 KLITFDAVGTLIRMTTSVGMFYREALNQAFGYV-RLPRPDLFTA---AFREAHRQQNAAYPCYGKNDGMTGEEWWRTVVRDTYRNMYDLFDDADLVEELESED-------GEVFEAVFQQLYNEDFTGEEAWELLPDAYRTLRRLALWREQG-GPRIGIVSNSDARLSRILYALGIEEYFDFVLTAEGTGSAKPDGDMFRIALREAQVEDPRLAAHVGNDFGKDCRCAAEAGW 349          
BLAST of jgi.p|Trimin1|349894 vs. uniprot
Match: A0A7R9U3B9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U3B9_9STRA)

HSP 1 Score: 164 bits (414), Expect = 1.940e-42
Identity = 103/249 (41.37%), Postives = 142/249 (57.03%), Query Frame = 1
Query:   67 PAPKLITFDAEGTLLQLASPKGLILRESLLKAHGYLARLPGPDLFQASHAAYDKALNAATAAQPCYGCGTGVTSHQWWYGVV---YDALVETL-----EAHNIPPSEMVDPVMEELFDELFYETFT-GPEA--YELRPDAARTLEKLAEWREAGTGPLLGIVTNADERLPTVLLNLGILEVFDFVLTSRQIGSELPARAIFDVALDKAGLT-------NAAEALHCGDDLERDIGGAAAAGWQSCLIAN 759
            P PKLITFDA GTL+QL S  G+I R++LL+ H    RLP PD+F     A+ +A  +   A PC+GCG+G+ S  WW  V+   YD++  +      E       E  + VME LF +L++  F  GP    +ELRP     L+ L      G G  LG+++N D+RLP +L +LGI + FDFVLTSR+ G E P++ +FD+A +  GL+          E LH GD L  D+ GA  AGWQS  I++
Sbjct:  276 PRPKLITFDATGTLMQLRSHIGVIYRDTLLE-HATTLRLPRPDVFSI---AFKEAYASQCKAMPCFGCGSGIASFDWWRPVMQGTYDSVFSSFGVTDEEVAEAGGMESKEEVMEMLFQDLYFNIFAKGPPEGMWELRPGVEAVLQNLRSAESCG-GLRLGVLSNFDDRLPGILESLGIAKYFDFVLTSREAGQEKPSQVMFDLARNALGLSADGSGPIETRECLHAGDTLGTDVRGALDAGWQSAFISD 519          
BLAST of jgi.p|Trimin1|349894 vs. uniprot
Match: A0A8J5XU42_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XU42_DIALT)

HSP 1 Score: 133 bits (334), Expect = 1.630e-32
Identity = 103/297 (34.68%), Postives = 156/297 (52.53%), Query Frame = 1
Query:   49 LAVPLPPAPKLITFDAEGTLLQLASPKGLILRESLLKAHGYLARLPGPDLFQASHAA-----------YDKALNAATAAQPCYGCGTGVTSHQWWYGVVYDALVETLEAHNIPPSEMVDPVMEELFDELFYETFTGPEAYELRPDAARTLEKLAEWR-EAGTGPL-LGIVTNADERLPTVLLNLGILEVFDFVLTSRQIGSELPARAIFDVALDKAGLTNA----AEALHCGDDLERDIGGAAAAGWQSCLIANPPA--PQGPQAYTVMGIS--------GLLPRL-GLPALSGPVP 855
            LAV     P+L+TFDA GTL+++  P G I R++L+ +          DL  A  AA           + +A  A  AA PC+G G+ ++S  WW  VV +A V    +  +  +EM  P+   LF  L YE+F     +EL   +A  +++LA WR +   G L +G+++N D+RLP +L +LG+   FDFVLTSR+ G E P R+IF+ A ++AGL          +H GD    D+ GA+ AGW++  +A+  A     P+A+  M  +        G +PR+ G PA +   P
Sbjct:    2 LAVVAATRPRLVTFDATGTLMRVQRPVGAIYRDALISSLSASKLARTADLSAAELAACNVDPVAIGRAFGRAYAAQCAAHPCFGAGS-LSSRDWWSSVVREAFVGAGVSEAVVRAEM--PL---LFPTL-YESFASTATWELLDASAGVVQQLARWRAQLPPGELTIGVISNFDDRLPALLNSLGLGRYFDFVLTSREHGDEKPCRSIFERASERAGLATVDVSPRTCVHVGDTFGTDVLGASRAGWRAVFVASDDALGELMPEAFVAMAETEHERIPSLGFVPRIVGAPAATALPP 291          
BLAST of jgi.p|Trimin1|349894 vs. uniprot
Match: A0A812QRQ7_SYMMI (Hdhd3 protein n=3 Tax=Symbiodinium TaxID=2949 RepID=A0A812QRQ7_SYMMI)

HSP 1 Score: 130 bits (327), Expect = 9.430e-32
Identity = 86/231 (37.23%), Postives = 127/231 (54.98%), Query Frame = 1
Query:   73 PKLITFDAEGTLLQLASPKGLILRESLLKAHGYLARLPGPDLFQASHAAYDKALNAATAAQ----PCYGCGTGVTSHQWWYGVVYDALVETLEAHNIPPSEMVDPVMEELFDELFYETFTGPEAYELRPDAARTLEKLAEWREAGTGPLLGIVTNADERLPTVLLNLGILEVFDFVLTSRQIGSELPARAIFDVALDKAGLTNAAEALHCGDDLERDIGGAAAAGWQSCLI 753
            P+LI+ D+ GTL+++  P G +  ++L +          PD+ Q S A   +   A  + Q    P +G G G    +WW  VV      T+    I  S++ +   E +FD+L+   F G EA+EL P   R+LE L EW  A    +LG+++N D+RL  +L NLGIL+ FDFVLTS +  +E P+  IF  AL+ AGL   + ALHCGD  +RD+ GA +  W + L+
Sbjct:   48 PRLISLDSTGTLMRVRRPIGDLYADALHRVR--------PDV-QVSAAEMTRVFPAIFSRQSSLSPSFGAG-GCGCREWWRAVVEG----TMGGAGIAVSDLGES-FEAVFDDLYGHVFCGQEAWELLPRTVRSLESLREWC-AANDCVLGVMSNMDDRLSVILQNLGILDKFDFVLTSYEARAEKPSAIIFTKALEVAGLAPTSHALHCGDSYKRDLIGATSVNWMAVLV 262          
BLAST of jgi.p|Trimin1|349894 vs. uniprot
Match: A0A1Q9ERX8_SYMMI (Haloacid dehalogenase-like hydrolase domain-containing protein 3 n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9ERX8_SYMMI)

HSP 1 Score: 130 bits (327), Expect = 9.040e-30
Identity = 86/231 (37.23%), Postives = 127/231 (54.98%), Query Frame = 1
Query:   73 PKLITFDAEGTLLQLASPKGLILRESLLKAHGYLARLPGPDLFQASHAAYDKALNAATAAQ----PCYGCGTGVTSHQWWYGVVYDALVETLEAHNIPPSEMVDPVMEELFDELFYETFTGPEAYELRPDAARTLEKLAEWREAGTGPLLGIVTNADERLPTVLLNLGILEVFDFVLTSRQIGSELPARAIFDVALDKAGLTNAAEALHCGDDLERDIGGAAAAGWQSCLI 753
            P+LI+ D+ GTL+++  P G +  ++L +          PD+ Q S A   +   A  + Q    P +G G G    +WW  VV      T+    I  S++ +   E +FD+L+   F G EA+EL P   R+LE L EW  A    +LG+++N D+RL  +L NLGIL+ FDFVLTS +  +E P+  IF  AL+ AGL   + ALHCGD  +RD+ GA +  W + L+
Sbjct:  545 PRLISLDSTGTLMRVRRPIGDLYADALHRVR--------PDV-QVSAAEMTRVFPAIFSRQSSLSPSFGAG-GCGCREWWRAVVEG----TMGGAGIAVSDLGES-FEAVFDDLYGHVFCGQEAWELLPRTVRSLESLREWC-AANDCVLGVMSNMDDRLSVILQNLGILDKFDFVLTSYEARAEKPSAIIFTKALEVAGLAPTSHALHCGDSYKRDLIGATSVNWMAVLV 759          
BLAST of jgi.p|Trimin1|349894 vs. uniprot
Match: A0A812J2P4_9DINO (HDHD3 protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812J2P4_9DINO)

HSP 1 Score: 127 bits (318), Expect = 1.500e-28
Identity = 85/231 (36.80%), Postives = 125/231 (54.11%), Query Frame = 1
Query:   73 PKLITFDAEGTLLQLASPKGLILRESLLKAHGYLARLPGPDLFQASHAAYDKALNAATAAQ----PCYGCGTGVTSHQWWYGVVYDALVETLEAHNIPPSEMVDPVMEELFDELFYETFTGPEAYELRPDAARTLEKLAEWREAGTGPLLGIVTNADERLPTVLLNLGILEVFDFVLTSRQIGSELPARAIFDVALDKAGLTNAAEALHCGDDLERDIGGAAAAGWQSCLI 753
            P+LIT D+ GTL+++  P G +  ++L +          PD+ Q S +   +A   A + Q    P +G   G    +WW  VV      T+    I  S + D   + +FD+L+ + F+G  A+EL P+  R+LE L  W  A    L G+++N D RL  +L NLGIL+ FDFVLTS    +E P+  IF  AL+ AGL   ++ALHCGD  +RD+ GA A  W + L+
Sbjct:  701 PRLITLDSTGTLMRVRKPIGDLYVDALRRVR--------PDI-QVSASEMTRAFPIAFSRQSSLSPSFGAD-GPGCREWWRAVVEG----TMAGAGITVSNL-DESFDAIFDDLYGKVFSGKAAWELLPNTLRSLESLRTWCSANDCRL-GVMSNMDSRLSLILQNLGILQNFDFVLTSYDARAEKPSPIIFHKALEAAGLAPTSQALHCGDSFKRDLLGATAVNWMAALV 915          
BLAST of jgi.p|Trimin1|349894 vs. uniprot
Match: A0A835YS88_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS88_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 7.050e-22
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 3
Query:    3 AAAVIPFPTCLQRRRSRDVDGRCGRGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSGRDGRLSXXXXXXXXXXVTGLPAAAGQLAKWSR 290
            AAAVIPFPTCLQRRRSRDVDGRCGRGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSGRDGRLSXXXXXXXXXXVTGLPAAAGQLAKWSR
Sbjct:    1 AAAVIPFPTCLQRRRSRDVDGRCGRGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSGRDGRLSXXXXXXXXXXVTGLPAAAGQLAKWSR 96          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|349894 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YZN2_9STRA2.610e-211100.00HAD-like domain-containing protein n=1 Tax=Tribone... [more]
A0A7S2G2K6_9STRA8.140e-5841.70Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2STH1_9STRA1.040e-4942.00Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2PCP1_9STRA3.840e-4536.99Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S1C225_9STRA1.100e-4445.49Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
A0A7R9U3B9_9STRA1.940e-4241.37Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A8J5XU42_DIALT1.630e-3234.68Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
A0A812QRQ7_SYMMI9.430e-3237.23Hdhd3 protein n=3 Tax=Symbiodinium TaxID=2949 RepI... [more]
A0A1Q9ERX8_SYMMI9.040e-3037.23Haloacid dehalogenase-like hydrolase domain-contai... [more]
A0A812J2P4_9DINO1.500e-2836.80HDHD3 protein n=1 Tax=Symbiodinium natans TaxID=87... [more]

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BLAST of jgi.p|Trimin1|349894 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YS88_9STRA7.050e-22100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_51contigContig_51:490077..493364 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|349894|estExt_Genemark1.C_Ctg_510041
DescriptionHaloacid dehalogenase-like hydrolase
COG categoryS
Max annot lvl4751|Fungi
EggNOG OGsCOG1011@1|root,KOG3085@2759|Eukaryota,38CID@33154|Opisthokonta,3Q28A@4751|Fungi,1GX6G@112252|Fungi incertae sedis
Evalue1.06e-29
Seed ortholog36080.S2K6T9
Hectar predicted targeting categoryother localisation
TranscriptId350216
TrackFilteredModels1
ProteinId349894
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349894gene_8800Tribonema minus UTEX_B_3156 geneContig_51 490077..493364 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349894Trimin1|349894|estExt_Genemark1.C_Ctg_510041Tribonema minus UTEX_B_3156 polypeptideContig_51 490210..493364 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_8800_4exon_8800_4Tribonema minus UTEX_B_3156 exonContig_51 490077..490500 -
exon_8800_3exon_8800_3Tribonema minus UTEX_B_3156 exonContig_51 490972..491145 -
exon_8800_2exon_8800_2Tribonema minus UTEX_B_3156 exonContig_51 491817..492032 -
exon_8800_1exon_8800_1Tribonema minus UTEX_B_3156 exonContig_51 493152..493364 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_8800UTR3_8800Tribonema minus UTEX_B_3156 three_prime_UTRContig_51 490077..490209 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_8800CDS_8800Tribonema minus UTEX_B_3156 CDSContig_51 493152..493364 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_8800 ID=mRNA_8800|Name=jgi.p|Trimin1|349894|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1027bp|location=Sequence derived from alignment at Contig_51:490077..493364- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCCGGGCGGCGCGGGGAGGCTGGTGAGGGCTGGCGTGCAGGAGTT
GGCAGTGCCTCTGCCGCCGGCGCCAAAGCTTATCACCTTTGATGCTGAGG
GCACTCTGCTGCAGCTGGCGTCACCAAAGGGACTGATCCTGAGGGAGAGC
CTGCTGAAGGCACATGGGTACCTAGCACGGCTCCCTGGACCCGACCTTTT
CCAGGCAAGCCACGCCGCATATGACAAGGCACTCAACGCAGCCACAGCAG
CACAGCCGTGCTATGGCTGCGGGACAGGCGTGACATCGCACCAGTGGTGG
TACGGCGTGGTGTACGACGCGCTGGTGGAGACGCTGGAGGCGCACAACAT
TCCGCCCAGTGAGATGGTTGACCCTGTGATGGAGGAGCTGTTTGATGAGC
TGTTCTATGAAACATTCACAGGCCCTGAGGCTTACGAGCTTCGGCCGGAT
GCTGCCAGGACCCTGGAGAAGCTGGCTGAATGGCGAGAGGCGGGCACAGG
GCCTCTCCTGGGTATAGTGACCAATGCGGATGAGCGGCTGCCTACTGTGC
TGCTCAACCTGGGGATACTGGAGGTGTTTGACTTTGTGCTCACCTCAAGA
CAGATTGGATCAGAGCTTCCGGCTCGCGCCATATTTGACGTGGCGCTGGA
CAAAGCAGGCCTCACCAACGCTGCCGAAGCGCTGCACTGCGGCGACGACT
TGGAGCGCGACATTGGAGGCGCAGCAGCAGCGGGCTGGCAGTCGTGCCTC
ATTGCCAACCCGCCCGCACCACAGGGGCCACAAGCCTACACAGTCATGGG
CATCTCGGGACTGCTCCCCAGGCTGGGTCTCCCTGCTCTATCGGGGCCTG
TACCGACGACACGACGGCGTGGGCAGTTTGTGGATGGAGAATGAGGGGGG
GGGGGGGGGTTGTATCAGGTAGGGGGGGAATGGGCAGTGCGTTTGGGGGG
GGACCGCATTGCGCCATAGAGCGCAACACACAGCCGTTTCCACATCTATG
GTCAATGTGAACATTGGCATTTCGCTG
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protein sequence of jgi.p|Trimin1|349894

>Trimin1|349894|estExt_Genemark1.C_Ctg_510041 ID=Trimin1|349894|estExt_Genemark1.C_Ctg_510041|Name=jgi.p|Trimin1|349894|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=298bp
MAPGGAGRLVRAGVQELAVPLPPAPKLITFDAEGTLLQLASPKGLILRES
LLKAHGYLARLPGPDLFQASHAAYDKALNAATAAQPCYGCGTGVTSHQWW
YGVVYDALVETLEAHNIPPSEMVDPVMEELFDELFYETFTGPEAYELRPD
AARTLEKLAEWREAGTGPLLGIVTNADERLPTVLLNLGILEVFDFVLTSR
QIGSELPARAIFDVALDKAGLTNAAEALHCGDDLERDIGGAAAAGWQSCL
IANPPAPQGPQAYTVMGISGLLPRLGLPALSGPVPTTRRRGQFVDGE*
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mRNA from alignment at Contig_51:490077..493364-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8800 ID=mRNA_8800|Name=jgi.p|Trimin1|349894|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3288bp|location=Sequence derived from alignment at Contig_51:490077..493364- (Tribonema minus UTEX_B_3156 )
ATGGCGCCGGGCGGCGCGGGGAGGCTGGTGAGGGCTGGCGTGCAGGAGTT GGCAGTGCCTCTGCCGCCGGCGCCAAAGCTTATCACCTTTGATGCTGAGG GCACTCTGCTGCAGCTGGCGTCACCAAAGGGACTGATCCTGAGGGAGAGC CTGCTGAAGGCACATGGGTACCTAGCACGGCTCCCTGGACCCGACCTTTT CCAGGCAAGCCACGTAACCAGTGTGCACCGCGACGTTGCTGTATTCTTCG TCGAGAATAGCACCTTCCTTAATCTTTCAAAATCATAACAGATGGCAGCT TGTACATTGGTTGTTTGCTGCCATGGCTGCTTCATGTCAATGCGTTTACC TTGTGCTAATACTGTGAAGCCGTCCAATCATACATGTAGAAGTACGATGC ATGCTTGTATACAGCGAGCTTGGTCTCAAGCGTCGTCAGTTTTCTGGAGC TGTTTGCGGTGACGGTCACAGTGCACTGTCCCAGCAAGCACTACCCCCAG GACTCATTGTTCAGCCACTGCCGAGTTTTAAAGCTGGCACTGGTGTTACC GGAAGCATAGTTTGCAGCCTCATGCGAAATGGAGAGCTCAGCGACGCTTT GTGCAAGGCAGTCTCGTGACGACACGTTGAGTGCTCCTCGGCAACTTCAT CTGCCGCTGCTGTGGTGCACCTTGCACGGCACTGTGGCTTGAACGTGCAC ACGACCGTTTGCCTCTGGAAGCATTCGGAATCAACCCCTGATTTGAATGT TGCTTTATGCAGTAGCACAACTACAAGTACCTCAGCGTTCGTTTGCAAAG CCTAGCGGCATCTGCCTGACGCCTTGCCGCAAATCGCAAATGGCAGACTA CAGCAAAAGCGGCGTCAGCTGTCTGTGTGTCTCTGGTACTATCATCTTCT TGTCGATCATGCAGCTAACAAAAATCAATTGGTCGCTGTTAGTCAGGAGC AGCTCGCAAAGTGGTACTGCAAATGGTAGGCAGGCAACTGTGTGGGATAG GCCTGCCCGAGTCCCTGAGCATTCCGCACAATTGCGCGGTATACCCACAC GATGGCGAAGCAGCAGCCATCTTTGGTCGCGCATTGCACTAGTATGTATG AGATGGCCATCTTAGGTGCCCATGGTCACTTCAATGTTCACATGTACAAA TTCTGCCATCAGATCAGACCTTTGAAGCCGAAAACCCAGCCCATGGGTGT TCCTTTTCATGGTATGGAACACTGAAATGGAGCTGCTATTGCGTCTGTCA AGTCGTATTTCAACAACGTGTTTGTTGGAGCAACTGCACCATCTGACTTG TTTACATCCTGCTCGCCAATTGCGCATCACAGGCCGCATATGACAAGGCA CTCAACGCAGCCACAGCAGCACAGCCGTGCTATGGCTGCGGGACAGGCGT GACATCGCACCAGTGGTGGTACGGCGTGGTGTACGACGCGCTGGTGGAGA CGCTGGAGGCGCACAACATTCCGCCCAGTGAGATGGTTGACCCTGTGATG GAGGAGCTGTTTGATGAGCTGTTCTATGAAACATTCACAGGCCCTGAGGT GAGCCAACTTGGCCAGGCAGGCTCTGGTGTGAGCAGAAATAGTGTTGTCG TTTCCAACCAATTGCAGTATTGCCTGCTGATTCATATATATTTGGACATG CTGATTGAAGTAATTGTGAAAAGCACAGATATTGCAGTCATTCACCATTC GTTGCATTGCCAGCTTATATGCAATATGTCAATCATTGAAATGCAGTTTG TCATTTTTGTGTCTGGGTGTGAAGTCCAGACAAAACGCCTAGTTGAACAC GAGCGCCTTCTCATATTTTATGACCCTCGTCATCCTGAGCCAATGTGAGC ATGACAATCATGTTGCAACCCCTACAGCGCTTTGCTCCAGCACCTACCAC AGATTCGCATAGTTGCAAGGTATGGACTGTGGCCAGTATCTGATGACTGT TGTATACCGTTGTACTGGAACGACCACTGCAACGTGTGTGAGACTTTGCA GCACCCTTGTTTCTCTCATGTCACACACTCTCTAGCTATGCCAAGCCAGC GTTTGCCGGTGCTTTTGGTGTGACCCATAGCCACGGCTCACGAAAAAGCT GCCACAGCAATGTCGTAACCTTGTAAAGGCTTTCACACTCTCCACAGCAT CATCTGTAGCATGAAATATCTTGCATTATGGTGCCAAGGATCTGACGTTG ATTTCACTTCCATTGGCAGGCTTACGAGCTTCGGCCGGATGCTGCCAGGA CCCTGGAGAAGCTGGCTGAATGGCGAGAGGCGGGCACAGGGCCTCTCCTG GGTATAGTGACCAATGCGGATGAGCGGCTGCCTACTGTGCTGCTCAACCT GGGGATACTGGAGGTGTTTGACTTTGTGCTCACCTCAAGACAGGTCAGGC CATACTTCTACTGCTGATGATGCCTTGTCAATTCAGCAGTACTCAGGTTG ATTACACGCATGGTGCAGAGGTCTGCTTTATCTGGGGGCTGTTTGCGCTT CTGCTGGTCCTGCATAAACAGCTGTGACTTGCTCGTTGGGGTCACGTTTC TCTATGCTAACAATACCTAAACTTCATTGCACTCCATCATACGAAAATGT CTGGTGTCATTGTCAGCAAATCATAGGATGTCTGGCAACAAGTGGCAACA AGCGTTGTGCGACTTTGAGAGGTGTATGGGTACGCATATGATGCGTCATA TAGGCCATCTACTTGGTATGCTGCACCATCATGAGATGATGACCACTCGC ACGTCCATACAAATGTTATATCAAGCATTGTCAGAAGTGCGACCAGACTG TGTGCATGTCTGACATTGCACCTGAGGCTGAATCATCTGGAATGCTTGCA TTCACATCTCGCAGATTGGATCAGAGCTTCCGGCTCGCGCCATATTTGAC GTGGCGCTGGACAAAGCAGGCCTCACCAACGCTGCCGAAGCGCTGCACTG CGGCGACGACTTGGAGCGCGACATTGGAGGCGCAGCAGCAGCGGGCTGGC AGTCGTGCCTCATTGCCAACCCGCCCGCACCACAGGGGCCACAAGCCTAC ACAGTCATGGGCATCTCGGGACTGCTCCCCAGGCTGGGTCTCCCTGCTCT ATCGGGGCCTGTACCGACGACACGACGGCGTGGGCAGTTTGTGGATGGAG AATGAGGGGGGGGGGGGGGGTTGTATCAGGTAGGGGGGGAATGGGCAGTG CGTTTGGGGGGGGACCGCATTGCGCCATAGAGCGCAACACACAGCCGTTT CCACATCTATGGTCAATGTGAACATTGGCATTTCGCTG
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Coding sequence (CDS) from alignment at Contig_51:490077..493364-

>mRNA_8800 ID=mRNA_8800|Name=jgi.p|Trimin1|349894|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=894bp|location=Sequence derived from alignment at Contig_51:490077..493364- (Tribonema minus UTEX_B_3156 )
ATGGCGCCGGGCGGCGCGGGGAGGCTGGTGAGGGCTGGCGTGCAGGAGTT
GGCAGTGCCTCTGCCGCCGGCGCCAAAGCTTATCACCTTTGATGCTGAGG
GCACTCTGCTGCAGCTGGCGTCACCAAAGGGACTGATCCTGAGGGAGAGC
CTGCTGAAGGCACATGGGTACCTAGCACGGCTCCCTGGACCCGACCTTTT
CCAGGCAAGCCACGCCGCATATGACAAGGCACTCAACGCAGCCACAGCAG
CACAGCCGTGCTATGGCTGCGGGACAGGCGTGACATCGCACCAGTGGTGG
TACGGCGTGGTGTACGACGCGCTGGTGGAGACGCTGGAGGCGCACAACAT
TCCGCCCAGTGAGATGGTTGACCCTGTGATGGAGGAGCTGTTTGATGAGC
TGTTCTATGAAACATTCACAGGCCCTGAGGCTTACGAGCTTCGGCCGGAT
GCTGCCAGGACCCTGGAGAAGCTGGCTGAATGGCGAGAGGCGGGCACAGG
GCCTCTCCTGGGTATAGTGACCAATGCGGATGAGCGGCTGCCTACTGTGC
TGCTCAACCTGGGGATACTGGAGGTGTTTGACTTTGTGCTCACCTCAAGA
CAGATTGGATCAGAGCTTCCGGCTCGCGCCATATTTGACGTGGCGCTGGA
CAAAGCAGGCCTCACCAACGCTGCCGAAGCGCTGCACTGCGGCGACGACT
TGGAGCGCGACATTGGAGGCGCAGCAGCAGCGGGCTGGCAGTCGTGCCTC
ATTGCCAACCCGCCCGCACCACAGGGGCCACAAGCCTACACAGTCATGGG
CATCTCGGGACTGCTCCCCAGGCTGGGTCTCCCTGCTCTATCGGGGCCTG
TACCGACGACACGACGGCGTGGGCAGTTTGTGGATGGAGAATGA
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