mRNA_8767 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|349882
Unique Name	mRNA_8767
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

[Close]

BLAST of jgi.p|Trimin1|349882 vs. uniprot
Match: A0A835YQ20_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ20_9STRA)

HSP 1 Score: 434 bits (1117), Expect = 4.730e-151
Identity = 229/229 (100.00%), Postives = 229/229 (100.00%), Query Frame = 1

Query:    1 MRWVGAIALLAAAGLRSAHGAAFGEAQAAIILCLKPDVTAPDATEAMVEGAARSALGLSADVPVKASLAVDVCTANAAWQARISVWNTATAVNSASGIASAQVDGIYYNRTLFFRSMSTGLTDAGATNVPDPSQLTLESLGYLVVWLDGTNGSSGGTTGGTSSNDTLEIGGTTVYWPGWMWAVYVAVVVCLVCPCMGFIFAYRRKXXVXEEADAQAAQPKAMSDNEAVF 687
            MRWVGAIALLAAAGLRSAHGAAFGEAQAAIILCLKPDVTAPDATEAMVEGAARSALGLSADVPVKASLAVDVCTANAAWQARISVWNTATAVNSASGIASAQVDGIYYNRTLFFRSMSTGLTDAGATNVPDPSQLTLESLGYLVVWLDGTNGSSGGTTGGTSSNDTLEIGGTTVYWPGWMWAVYVAVVVCLVCPCMGFIFAYRRKXXVXEEADAQAAQPKAMSDNEAVF
Sbjct:    1 MRWVGAIALLAAAGLRSAHGAAFGEAQAAIILCLKPDVTAPDATEAMVEGAARSALGLSADVPVKASLAVDVCTANAAWQARISVWNTATAVNSASGIASAQVDGIYYNRTLFFRSMSTGLTDAGATNVPDPSQLTLESLGYLVVWLDGTNGSSGGTTGGTSSNDTLEIGGTTVYWPGWMWAVYVAVVVCLVCPCMGFIFAYRRKXXVXEEADAQAAQPKAMSDNEAVF 229

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|349882 vs. uniprot

BLAST of jgi.p|Trimin1|349882 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A835YQ20_9STRA	4.730e-151	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_51	contig	Contig_51:162428..166665 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|349882\|estExt_Genemark1.C_Ctg_510010
Hectar predicted targeting category	signal peptide
TranscriptId	350204
Track	FilteredModels1
ProteinId	349882

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|349882	gene_8767	Tribonema minus UTEX_B_3156	gene	Contig_51 162428..166665 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|349882	Trimin1\|349882\|estExt_Genemark1.C_Ctg_510010	Tribonema minus UTEX_B_3156	polypeptide	Contig_51 162898..166665 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_8767_5	exon_8767_5	Tribonema minus UTEX_B_3156	exon	Contig_51 162428..162954 -
exon_8767_4	exon_8767_4	Tribonema minus UTEX_B_3156	exon	Contig_51 163350..163550 -
exon_8767_3	exon_8767_3	Tribonema minus UTEX_B_3156	exon	Contig_51 163835..163960 -
exon_8767_2	exon_8767_2	Tribonema minus UTEX_B_3156	exon	Contig_51 164982..165200 -
exon_8767_1	exon_8767_1	Tribonema minus UTEX_B_3156	exon	Contig_51 166579..166665 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR3_8767	UTR3_8767	Tribonema minus UTEX_B_3156	three_prime_UTR	Contig_51 162428..162897 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_8767	CDS_8767	Tribonema minus UTEX_B_3156	CDS	Contig_51 166579..166665 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_51:162428..166665-
coding sequence from alignment at Contig_51:162428..166665-

spliced messenger RNA

>mRNA_8767 ID=mRNA_8767|Name=jgi.p|Trimin1|349882|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1160bp|location=Sequence derived from alignment at Contig_51:162428..166665- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGAGGTGGGTAGGGGCCATAGCGCTGCTGGCGGCGGCAGGATTACGAAG
TGCGCATGGTGCAGCCTTCGGCGAAGCGCAGGCGGCGATCATCCTCTGCT
TGAAACCGGACGTCACGGCGCCGGACGCGACGGAGGCCATGGTCGAGGGT
GCGGCGCGCTCGGCGCTGGGGCTGAGCGCTGACGTACCAGTAAAGGCGTC
GCTCGCGGTGGACGTGTGCACTGCCAACGCGGCGTGGCAGGCGCGGATCA
GCGTGTGGAACACGGCCACGGCGGTCAACAGCGCGAGCGGCATCGCGAGC
GCGCAGGTGGACGGCATCTACTACAACAGGACGCTGTTCTTCCGCTCCAT
GAGCACCGGACTCACGGATGCGGGTGCGACCAACGTGCCCGACCCCTCTC
AGCTCACGCTGGAATCGCTGGGGTACCTCGTGGTCTGGTTGGACGGCACC
AACGGCAGCAGTGGCGGCACCACTGGCGGAACCAGCAGCAACGACACCCT
CGAGATCGGGGGGACGACGGTGTACTGGCCGGGGTGGATGTGGGCCGTCT
ACGTCGCCGTCGTGGTGTGCTTGGTGTGCCCGTGCATGGGCTTCATCTTT
GCGTACCGGCGCAAGCGCGAGGTGGAGGAGGAGGCGGACGCTCAGGCGGC
GCAACCAAAGGCCATGTCAGACAACGAGGCCGTGTTCTGACCGCAACAGC
AAGCCGACGAGGAGGTCCTGAGCTAGGAGTAGGGTTAGGGTTGCTCCTAA
CCCCAAGCTCACTCACGGCCCTGTGCACAGGCCTTAGAAACACGACCGCC
TGACCACTAGCATCAAGGCTGGTGATCCTGGCCACAGAAGTTCGATGGGT
TCGCCACAATCACAAGTGCCAGCGCTAGCGGCCTTGGAAAGAGTGCGGCA
GCACACTGCCTGCACACCGAATATATATTTCGCAGCAGCGCGCACGCAGG
ATAGGGTGCGCACACGCGTGAGTACATAGCGCGAGGCGATGCCCGTGTGG
CACACAGCACGGCGGAGGCGCAAGCCATCGCGCGCGATTGGTGGCTGTAT
GCTTTGTTTAGCGGCTTACCCATTTACCGCTGGTCGTGCGTATACCGTTG
CGAAGATGTTGTGCGTTGCACTGTCACAGTTGTAACAAGGCAGTCGGTTT
TGTCATTCAA

protein sequence of jgi.p|Trimin1|349882

>Trimin1|349882|estExt_Genemark1.C_Ctg_510010 ID=Trimin1|349882|estExt_Genemark1.C_Ctg_510010|Name=jgi.p|Trimin1|349882|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=230bp
MRWVGAIALLAAAGLRSAHGAAFGEAQAAIILCLKPDVTAPDATEAMVEG
AARSALGLSADVPVKASLAVDVCTANAAWQARISVWNTATAVNSASGIAS
AQVDGIYYNRTLFFRSMSTGLTDAGATNVPDPSQLTLESLGYLVVWLDGT
NGSSGGTTGGTSSNDTLEIGGTTVYWPGWMWAVYVAVVVCLVCPCMGFIF
AYRRKREVEEEADAQAAQPKAMSDNEAVF*

mRNA from alignment at Contig_51:162428..166665-

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8767 ID=mRNA_8767|Name=jgi.p|Trimin1|349882|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4238bp|location=Sequence derived from alignment at Contig_51:162428..166665- (Tribonema minus UTEX_B_3156 )
ATGAGGTGGGTAGGGGCCATAGCGCTGCTGGCGGCGGCAGGATTACGAAG
TGCGCATGGTGCAGCCTTCGGCGAAGCGCAGGCGGCGGTGAGGGCGGCGC
AAAGCGATGAGAGGGAGCTTGCGAGTGCAGATGTCACTTTTGCAACACAA
ACAGAGGTGCGTCCACTGCATCAGCATGTCACTCAGTGCCAGAAGTAGCA
CAGGATCAAAAGCGTCGGCACACTGCTCGGACTGTGTGTGTGTCGCGTGC
TGACAATTGCATGCAAAGCTTTGCCTCTGAAGACATTGTGAACATGAGCT
TTCGTTGTGCACTCGTAGTACCCCGAAGCCCGCGTGACAGCAAACAGCGA
CGCCTGCTCTCAATTCACCCGCGCTCTTCCCACTGGCCTCTTGCTGCACA
CGCCATTTTTTTTGCTGGAGACATGAAAACCTATAGCCGGTTACAGAAGT
TGCGTATCAGGAAGCTCACCGACTGTACGAATAGACACTAATAGTCCGTG
ACTTCTGGTCCTTGGTTCTGCTCTGAACATTCTAGTCAGTTTCTTAGCTT
CAAACAACAGTGCACGGTTAGATTGCATTCACCTTCCATTCTCTTTCGAT
GTAAAAATTGGTATTCTGCATTTTTAAAGAGATACATCAACTTCAACACA
CTACAAGCCTAGCCGTGCTCATAAATAGTCCCCCTGGCCGTGTGACTGGC
GACGGCTGCCGCAACTGCTGTCTGCACTCCTGCTGTACCACCTTCAATAG
CACTGCAAGTCAGGTGAAAGTACGGTGTGACTGCCTGGTCTGTTGTGGCA
AGGCTTCACTGGCTGCCTCCCGCTGCTGCAAGCGGCGAACAACTCAGCCG
CCGTAGCAGCTGTCGCTACAGAGTTTACGCATCAACTTGCGCTCCGCCGT
CATCTGTGAGTACCGCTGCAGGCAAGGATGGCACACTGTACTCATGCGGT
ATGTGCTGCGTATACGTGCAGCTCAGCAGTCCTTGTGCCATTCCTTGGCC
GGGGCCATTCAGTTTGTTCTGCATCCTTGCCGCAGTTCAAGATGCTGCTG
CAGCGTCGATTCAGTGCCCCCCCCCCCCCCCCCCCGGTTCACGCGCTGCA
TTTGGCCAACAACAACGCTTTACGTGCGCAGCAAGTAGAGCAAATAGAAA
CCGTCTCATCTTGTCTGGTCACAAGCACTCTTGGAAATTTTGCGCACCCC
GGCCGCACCCTCATTTGAACGCATGGCTGTAGATGATCCCATATGGCGAG
TCTAGCCATGGCGCATGGTCAAGTGTGTGACGCGACTTGCAAGCATGCTC
AGGCACAAGGAAACGCACGACGAAGGGCGCCCAGCGTGCCCCGTCATCAC
AACTTCAACTTGTAATTGTAACCCTCCTCACACACACACACACACACACA
CACGCACGCGCACGCCCCTACACTTGTGACGTTGCTCAACTCCCCCCCCC
CCCTTCCCCCTTCAGATCATCCTCTGCTTGAAACCGGACGTCACGGCGCC
GGACGCGACGGAGGCCATGGTCGAGGGTGCGGCGCGCTCGGCGCTGGGGC
TGAGCGCTGACGTACCAGTAAAGGCGTCGCTCGCGGTGGACGTGTGCACT
GCCAACGCGGCGTGGCAGGCGCGGATCAGCGTGTGGAACACGGCCACGGC
GGTCAACAGCGCGAGCGGCATCGCGAGCGCGCAGGTGAGTGTGCATGCCC
TACATACCCCAATGCGCTCCTCTTGTGCACATGTTGACGTGATTCGTTGA
CGTGACACGATGGACACTGTGGTCATGCAGGTGAGCGCGCCTGCGGGGGG
GGTCACTTGGTCCGGGGCTAGGGTCGGGGCTAGTGCGTAGGTCGGTGCGA
GGAACAGGAGGAGGGGGGGCGGGGGGCATTTGGACTTGGGAGGGGTGTGG
GGGTGGGGGGGGGGGGGGGGCTGTGGCTTTGCACACCGCTCACACAGGGC
GATGCGTGCACGTCAGCGTGATGAACGCAGTGGCTATGGTTGGCAGCGCT
CAGCAGCAGTGCCAGCGCTCGGGCAAGAGTGTCGCGCGCAGTTGGGATTA
CAGGGGGCGAGGCCTGTGCAACACGAGGCGCCTCGCGCGCATCAGCGCTC
TGCTCGCGCAACGGCGGCAGTTGACACAGCGCCACGCTGGCATCAGGCGA
GAGCATTGAAGCCCCTGTTGTCAGGTTTGCGGTCGTGTGGGCTGGCGAGG
TGCTCGCGTTTGCGTACTTCAAGTGTGCAGTGCGGGCCGAGGCGCGTTGA
AGTCGACGACGCGACGTCAGGTACTTCAAGTACTTGAAGATGGCATGAGG
CAGCTCGGAAAAGGCGACGGAGCGGCACAGCCAGTTCTCAGATGTAGGGG
GGGGAGCGGGGAGGGCAGTGTGCGGCTGCGGCACCTTGCAGCTCCTGCTC
ATCGGCGGCGACGGGTCCAGGGTTGACCGCCGCGGCTGCCAGTGCGCCGC
CGGCAGACTGTGGGCGTGAGCCACACTTGACACTTATCGGCAGCAGCAGC
GGATGCGTTCCTTCAAGACCTCTCTGACCGCCCCCCCCCCCGCCCCACCC
CCGCCCCGCAACATTCAGAATCATACTGGCGTTGCAGCGGTCAGTACCCC
CCCCCCACCCCACCCGCACCCCTTAAGAATCGCACAAGCGTCGCAGCGCT
CAGCACGAAGGAGCTCACTCTGCCACTGCGTGCTCTGATCGCCTTGACAC
GACAGGTGGACGGCATCTACTACAACAGGACGCTGTTCTTCCGCTCCATG
AGCACCGGACTCACGGATGCGGGTGCGACCAACGTGCCCGACCCCTCTCA
GCTCACGCTGGAATCGCTGGGGTACCTCGTGGTGAGTTCAAGTGCACGCC
TCGCAGTAATTGACATGGTCCTTATGACACTTTTCTTCAGGCTGCGGCAC
CGCGGCGCCTGTTGAAGTTGGTGCATGAGGCGCGGTGACGTGCCACCGCA
GACTGGCCTAGCCGTGATACTCCAACTGACATGTTCTGGGCAATTATGAG
TCTGGGTGATTCAGCTCTGAGTCTGGGTACTCACTCCCTGCCTGTGAGCG
GCGCGTTGCCACACCGCCGCCAAGATTGCAAACACTAAGTGATGCCCGTC
TTGCTCTCTGCGCAGGTCTGGTTGGACGGCACCAACGGCAGCAGTGGCGG
CACCACTGGCGGAACCAGCAGCAACGACACCCTCGAGATCGGGGGGACGA
CGGTGTACTGGCCGGGGTGGATGTGGGCCGTCTACGTCGCCGTCGTGGTG
TGCTTGGTGTGCCCGTGCATGGGCTTCATCTTTGCGTACCGGCGCAAGCG
CGAGGTGGAGGAGGAGGTGCGTCACCAGCAGCTGTTCATTTGTCAAGTTG
AAGTTGCCTGGTGGTCGTTCGCCGTATTTGCCATGGCCCATGTGGGCCAT
GCGCTGCTCTCGCACCGTCTTTGTCCTTGTTGCACGAGGATTGATCTCAA
TTTTTTTGGGGAAGAGGTCCGCCGGCATCAGCATTCAGCTGCAGGGGCAG
CTTGCTGCTGGTGTGCACGTGCATGTGTGCCGAGGCGCATCTCACGTCTC
TCAATTACTTCGCCTTGCCCGCCTTGCCCCCCTCCGTGCGGTAGACTAAT
CAGGCAAGTAGTTGTTCATCAGTGAGCCATGCCCATAATCATTTGGTCAT
GCGCTCGCCGCTCACCCACTGCTCTGCTTGCGCTGCCGCCGCCGCGTGCA
TCGCGCCTCAGGCGGACGCTCAGGCGGCGCAACCAAAGGCCATGTCAGAC
AACGAGGCCGTGTTCTGACCGCAACAGCAAGCCGACGAGGAGGTCCTGAG
CTAGGAGTAGGGTTAGGGTTGCTCCTAACCCCAAGCTCACTCACGGCCCT
GTGCACAGGCCTTAGAAACACGACCGCCTGACCACTAGCATCAAGGCTGG
TGATCCTGGCCACAGAAGTTCGATGGGTTCGCCACAATCACAAGTGCCAG
CGCTAGCGGCCTTGGAAAGAGTGCGGCAGCACACTGCCTGCACACCGAAT
ATATATTTCGCAGCAGCGCGCACGCAGGATAGGGTGCGCACACGCGTGAG
TACATAGCGCGAGGCGATGCCCGTGTGGCACACAGCACGGCGGAGGCGCA
AGCCATCGCGCGCGATTGGTGGCTGTATGCTTTGTTTAGCGGCTTACCCA
TTTACCGCTGGTCGTGCGTATACCGTTGCGAAGATGTTGTGCGTTGCACT
GTCACAGTTGTAACAAGGCAGTCGGTTTTGTCATTCAA

Coding sequence (CDS) from alignment at Contig_51:162428..166665-

>mRNA_8767 ID=mRNA_8767|Name=jgi.p|Trimin1|349882|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=690bp|location=Sequence derived from alignment at Contig_51:162428..166665- (Tribonema minus UTEX_B_3156 )
ATGAGGTGGGTAGGGGCCATAGCGCTGCTGGCGGCGGCAGGATTACGAAG
TGCGCATGGTGCAGCCTTCGGCGAAGCGCAGGCGGCGATCATCCTCTGCT
TGAAACCGGACGTCACGGCGCCGGACGCGACGGAGGCCATGGTCGAGGGT
GCGGCGCGCTCGGCGCTGGGGCTGAGCGCTGACGTACCAGTAAAGGCGTC
GCTCGCGGTGGACGTGTGCACTGCCAACGCGGCGTGGCAGGCGCGGATCA
GCGTGTGGAACACGGCCACGGCGGTCAACAGCGCGAGCGGCATCGCGAGC
GCGCAGGTGGACGGCATCTACTACAACAGGACGCTGTTCTTCCGCTCCAT
GAGCACCGGACTCACGGATGCGGGTGCGACCAACGTGCCCGACCCCTCTC
AGCTCACGCTGGAATCGCTGGGGTACCTCGTGGTCTGGTTGGACGGCACC
AACGGCAGCAGTGGCGGCACCACTGGCGGAACCAGCAGCAACGACACCCT
CGAGATCGGGGGGACGACGGTGTACTGGCCGGGGTGGATGTGGGCCGTCT
ACGTCGCCGTCGTGGTGTGCTTGGTGTGCCCGTGCATGGGCTTCATCTTT
GCGTACCGGCGCAAGCGCGAGGTGGAGGAGGAGGCGGACGCTCAGGCGGC
GCAACCAAAGGCCATGTCAGACAACGAGGCCGTGTTCTGA