Trimin1|349840|estExt_Genemark1.C_Ctg_500042 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|349840
Unique NameTrimin1|349840|estExt_Genemark1.C_Ctg_500042
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length185
Homology
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BLAST of jgi.p|Trimin1|349840 vs. uniprot
Match: A0A836CD33_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD33_9STRA)

HSP 1 Score: 358 bits (920), Expect = 3.850e-125
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 0 
Query:    1 MSVDKRAEIERVKGETNSALDRIITTAGHANDIGANTQAQLLEQGDRIKSINREVDKTDAVLNSTHKKLKHGFGLRGWFTSHKARVPVLDDTPAYIPSRKPRAVDRKEGDAAPASGADLTDADFDTKLDAIDKLIDNMAVTANGLHSELKAQAEDLDKVGNDVHKVDEKAKKQSRDMARRFKLK 184
            MSVDKRAEIERVKGETNSALDRIITTAGHANDIGANTQAQLLEQGDRIKSINREVDKTDAVLNSTHKKLKHGFGLRGWFTSHKARVPVLDDTPAYIPSRKPRAVDRKEGDAAPASGADLTDADFDTKLDAIDKLIDNMAVTANGLHSELKAQAEDLDKVGNDVHKVDEKAKKQSRDMARRFKLK
Sbjct:    1 MSVDKRAEIERVKGETNSALDRIITTAGHANDIGANTQAQLLEQGDRIKSINREVDKTDAVLNSTHKKLKHGFGLRGWFTSHKARVPVLDDTPAYIPSRKPRAVDRKEGDAAPASGADLTDADFDTKLDAIDKLIDNMAVTANGLHSELKAQAEDLDKVGNDVHKVDEKAKKQSRDMARRFKLK 184
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|349840 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CD33_9STRA3.850e-125100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.20.5.110coord: 3..72
e-value: 9.0E-8
score: 34.0
NoneNo IPR availableGENE3D1.20.5.110coord: 105..182
e-value: 1.8E-6
score: 29.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 165..184
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 99..118
NoneNo IPR availablePANTHERPTHR19305:SF9SYNAPTOSOMAL-ASSOCIATED PROTEIN 29coord: 7..85
NoneNo IPR availablePANTHERPTHR19305:SF9SYNAPTOSOMAL-ASSOCIATED PROTEIN 29coord: 106..179
NoneNo IPR availablePANTHERPTHR19305SYNAPTOSOMAL ASSOCIATED PROTEINcoord: 7..85
NoneNo IPR availablePANTHERPTHR19305SYNAPTOSOMAL ASSOCIATED PROTEINcoord: 106..179
NoneNo IPR availableSUPERFAMILY58038SNARE fusion complexcoord: 7..70
NoneNo IPR availableSUPERFAMILY58038SNARE fusion complexcoord: 118..177
IPR000727Target SNARE coiled-coil homology domainPROSITEPS50192T_SNAREcoord: 118..180
score: 10.111959
IPR000727Target SNARE coiled-coil homology domainPROSITEPS50192T_SNAREcoord: 10..72
score: 11.06585

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_50contigContig_50:307976..308530 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349840mRNA_8901Tribonema minus UTEX_B_3156 mRNAContig_50 307782..308648 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|349840|estExt_Genemark1.C_Ctg_500042 ID=Trimin1|349840|estExt_Genemark1.C_Ctg_500042|Name=jgi.p|Trimin1|349840|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=185bp
MSVDKRAEIERVKGETNSALDRIITTAGHANDIGANTQAQLLEQGDRIKS
INREVDKTDAVLNSTHKKLKHGFGLRGWFTSHKARVPVLDDTPAYIPSRK
PRAVDRKEGDAAPASGADLTDADFDTKLDAIDKLIDNMAVTANGLHSELK
AQAEDLDKVGNDVHKVDEKAKKQSRDMARRFKLK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000727T_SNARE_dom