Trimin1|347404|estExt_Genemark1.C_Ctg_110133 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|347404
Unique NameTrimin1|347404|estExt_Genemark1.C_Ctg_110133
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length382
Homology
BLAST of jgi.p|Trimin1|347404 vs. uniprot
Match: A0A836CMF3_9STRA (U6 snRNA phosphodiesterase 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMF3_9STRA)

HSP 1 Score: 539 bits (1388), Expect = 5.970e-190
Identity = 381/381 (100.00%), Postives = 381/381 (100.00%), Query Frame = 0
Query:    1 MDLLGAYDSGDSGSDSDAARSFQRAAPHERGRWPSHVHIAVPPSAELRELSAAAIRHLEARLLRAAQAQQAXXXXXXXXXXXXXXXXXXXAPRVIPHDAFAVGGSSANGGGDGLRAXXXXXXXXXGGRGNSCXXXXXXXXXXXAAAXXXXXXXXPRQGXEGEGGAGGVHLSLSRPFALRAHQLEPFAARLRRAAAGARAFRCEVSGAYEVLVNDDRTRSFVCLKVVGGCAPILALIGRVNEALADFQQQTYYEDPKLHISVASXXXXXXXXXXXXXXAAGDITQLLAAGEHTRRSGSHRSGNNTADARSGDAGXXXXXDNDISPCSADDRGISSSLAGSSGXXXXXXVGXXXXXXXXEVIDVDVTAFVLKAGFKTFTIELG 381
            MDLLGAYDSGDSGSDSDAARSFQRAAPHERGRWPSHVHIAVPPSAELRELSAAAIRHLEARLLRAAQAQQAXXXXXXXXXXXXXXXXXXXAPRVIPHDAFAVGGSSANGGGDGLRAXXXXXXXXXGGRGNSCXXXXXXXXXXXAAAXXXXXXXXPRQGXEGEGGAGGVHLSLSRPFALRAHQLEPFAARLRRAAAGARAFRCEVSGAYEVLVNDDRTRSFVCLKVVGGCAPILALIGRVNEALADFQQQTYYEDPKLHISVASXXXXXXXXXXXXXXAAGDITQLLAAGEHTRRSGSHRSGNNTADARSGDAGXXXXXDNDISPCSADDRGISSSLAGSSGXXXXXXVGXXXXXXXXEVIDVDVTAFVLKAGFKTFTIELG
Sbjct:    1 MDLLGAYDSGDSGSDSDAARSFQRAAPHERGRWPSHVHIAVPPSAELRELSAAAIRHLEARLLRAAQAQQAXXXXXXXXXXXXXXXXXXXAPRVIPHDAFAVGGSSANGGGDGLRAXXXXXXXXXGGRGNSCXXXXXXXXXXXAAAXXXXXXXXPRQGXEGEGGAGGVHLSLSRPFALRAHQLEPFAARLRRAAAGARAFRCEVSGAYEVLVNDDRTRSFVCLKVVGGCAPILALIGRVNEALADFQQQTYYEDPKLHISVASXXXXXXXXXXXXXXAAGDITQLLAAGEHTRRSGSHRSGNNTADARSGDAGXXXXXDNDISPCSADDRGISSSLAGSSGXXXXXXVGXXXXXXXXEVIDVDVTAFVLKAGFKTFTIELG 381          
BLAST of jgi.p|Trimin1|347404 vs. uniprot
Match: D7FRL4_ECTSI (U6 snRNA phosphodiesterase 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRL4_ECTSI)

HSP 1 Score: 95.5 bits (236), Expect = 1.120e-18
Identity = 75/235 (31.91%), Postives = 101/235 (42.98%), Query Frame = 0
Query:   24 RAAPHERGRWPSHVHIAVPPSAELRELSAAAIRHLEARLLRAAQAQQAXXXXXXXXXXXXXXXXXXXAPRVIPHDAFAVGGSSANGGGDGLRAXXXXXXXXXGGRGNSCXXXXXXXXXXXAAAXXXXXXXXPRQGXEGEGGAGGVHLSLSRPFALRAHQLEPFAARLRRAAAGARAFRCEVSGAYEVLVNDDRTRSFVCLKVVGGCAPILALIGRVNEALADFQQQTYYEDPKLH 258
            R  PHERG WP+HV I VP SA  + ++ A++ H   RL                                    A+  G   A GG  G +           GR  S            A+A        P         +G  HLSLS+  ALRAHQ+ PF   L+ A   +R+F       Y+VLVN+D+TRSFVCL+V GG   +L+LI +V+  +  F+Q  YYE   +H
Sbjct:   75 RRFPHERGNWPTHVFIPVPNSAAFKSMAEASVSHFRQRLA----------------------------------TAWREGHGRAEGGKGGKKRTRD-------GRQRS----------NQASASSAGKLDPPEVVMNDMDPSGRQHLSLSKTTALRAHQINPFVRGLKEAVKSSRSFTASFVSGYDVLVNEDKTRSFVCLRVRGGRQMVLSLIAKVDPLMRRFKQSEYYEVIIMH 258          
BLAST of jgi.p|Trimin1|347404 vs. uniprot
Match: A0A7S2UZE3_9STRA (U6 snRNA phosphodiesterase 1 n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZE3_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 1.160e-17
Identity = 47/95 (49.47%), Postives = 63/95 (66.32%), Query Frame = 0
Query:  169 HLSLSRPFALRAHQLEPFAARLRRAAAGARAFRCEVSGAYEVLVNDDRTRSFVCLKVVGGCAPILALIGRVNEALADFQQQTYYEDPKLHISVAS 263
            H+SLSRPF LR H ++P  A L++A + A +F  EV G +EVL ND  TRSFVCLK+  G + +  L+ RV+  L  F+   YY++ K HISVAS
Sbjct:   71 HISLSRPFVLRYHHIDPLVAALQQALSSAPSFTVEVQGEWEVLTNDQGTRSFVCLKIGPGSSLLEDLVDRVDGVLQKFRAPVYYQEKKFHISVAS 165          
BLAST of jgi.p|Trimin1|347404 vs. uniprot
Match: A0A5D6XW39_9STRA (U6 snRNA phosphodiesterase 1 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XW39_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 4.050e-15
Identity = 49/98 (50.00%), Postives = 61/98 (62.24%), Query Frame = 0
Query:  166 GGVHLSLSRPFALRAHQLEPFAARLRRAAAGARAFRCEVSGAYEVLVNDDRTRSFVCLKVVGGCAPILALIGRVNEALADFQQQTYYEDPKLHISVAS 263
            GGVHLSLSRPF LR  Q+ PF   LR A    R F   ++GA  VLVND+RTRSF+ L+V  G   +LA +  V+  +  F    YYEDP  H+S+AS
Sbjct:  113 GGVHLSLSRPFTLRYEQITPFVLELRAALKWRRRFVLSLAGA-TVLVNDERTRSFLALRVADGEREVLATLKCVDACMKHFALPVYYEDPIPHVSIAS 209          
BLAST of jgi.p|Trimin1|347404 vs. uniprot
Match: A0A6A4AHD6_9STRA (U6 snRNA phosphodiesterase n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A4AHD6_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 1.010e-12
Identity = 47/97 (48.45%), Postives = 61/97 (62.89%), Query Frame = 0
Query:  167 GVHLSLSRPFALRAHQLEPFAARLRRAAAGARAFRCEVSGAYEVLVNDDRTRSFVCLKVVGGCAPILALIGRVNEALADFQQQTYYEDPKLHISVAS 263
            G+HLSLSRPF L   Q+E F   LR A    + F   + GA  VLVNDDRTRSF+ L+V  G   +  ++  V++ LA F+  TYYEDP  H+S+AS
Sbjct:  122 GLHLSLSRPFVLTFDQIEGFVDSLRSALKWRQRFSVTLQGAL-VLVNDDRTRSFLSLRVSEGEQQLKQVLRCVDQCLARFELPTYYEDPIPHVSIAS 217          
BLAST of jgi.p|Trimin1|347404 vs. uniprot
Match: G4YH94_PHYSP (U6 snRNA phosphodiesterase n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YH94_PHYSP)

HSP 1 Score: 77.4 bits (189), Expect = 1.230e-12
Identity = 46/101 (45.54%), Postives = 61/101 (60.40%), Query Frame = 0
Query:  163 GGAGGVHLSLSRPFALRAHQLEPFAARLRRAAAGARAFRCEVSGAYEVLVNDDRTRSFVCLKVVGGCAPILALIGRVNEALADFQQQTYYEDPKLHISVAS 263
            G  GG+HLSLSR F L   Q+E F   L  A    + F   + GA  VLVNDD+TRSF+ L+V  G      ++  V++ LA F+Q TYY+DP  H+S+AS
Sbjct:  116 GSGGGLHLSLSRAFILTYDQIEGFVDSLHTALKWRQRFSVTLEGAL-VLVNDDKTRSFLALRVSAGAQQFNQVLRCVDQCLACFKQPTYYQDPIPHVSIAS 215          
BLAST of jgi.p|Trimin1|347404 vs. uniprot
Match: A0A8K1FRB5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FRB5_PYTOL)

HSP 1 Score: 77.0 bits (188), Expect = 2.100e-12
Identity = 44/96 (45.83%), Postives = 58/96 (60.42%), Query Frame = 0
Query:  168 VHLSLSRPFALRAHQLEPFAARLRRAAAGARAFRCEVSGAYEVLVNDDRTRSFVCLKVVGGCAPILALIGRVNEALADFQQQTYYEDPKLHISVAS 263
            +H+SLSRPF L   Q+EPF   LR A    R F   V     VLVND+RTRSF+ L++  G    +  +  V++ + DFQ  TYYEDP  H+S+AS
Sbjct:  103 LHMSLSRPFVLTYEQIEPFVEALRAALKWRRRFALTVEEP-TVLVNDERTRSFLALQLDAGKQEFVKTVRCVDQCMQDFQLPTYYEDPIPHVSIAS 197          
BLAST of jgi.p|Trimin1|347404 vs. uniprot
Match: M4B6T3_HYAAE (U6 snRNA phosphodiesterase n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B6T3_HYAAE)

HSP 1 Score: 75.5 bits (184), Expect = 8.350e-12
Identity = 44/96 (45.83%), Postives = 61/96 (63.54%), Query Frame = 0
Query:  168 VHLSLSRPFALRAHQLEPFAARLRRAAAGARAFRCEVSGAYEVLVNDDRTRSFVCLKVVGGCAPILALIGRVNEALADFQQQTYYEDPKLHISVAS 263
            +HLSLSRPF L   Q+  F   LR A    + F   +  +  VL+NDD+TRSF+ L+VV G + I+ L+ RV++ LA F Q  YY+DP  H+S+AS
Sbjct:  121 LHLSLSRPFVLTYDQISAFVDSLRAALKWRQRFSITLRRSL-VLLNDDKTRSFLALRVVEGGSDIVNLLQRVDQCLARFGQPVYYQDPIPHVSIAS 215          
BLAST of jgi.p|Trimin1|347404 vs. uniprot
Match: A0A165P220_EXIGL (U6 snRNA phosphodiesterase 1 n=1 Tax=Exidia glandulosa HHB12029 TaxID=1314781 RepID=A0A165P220_EXIGL)

HSP 1 Score: 74.7 bits (182), Expect = 1.660e-11
Identity = 43/99 (43.43%), Postives = 58/99 (58.59%), Query Frame = 0
Query:  164 GAGGVHLSLSRPFALRAHQLEPFAARLRRAAAGARAFRCEVSGAYEVLVNDDRTRSFVCLKVVGGCAPILALIGRVNEALADFQQQTYYEDPKLHISVA 262
            GA  +H+SLSRP  + A+Q +   A  RR AA  R FR   S  + VL ND+RTR+F+ L V  G   +  ++  VN AL    Q TYY+DP+ H S+A
Sbjct:  113 GAAELHISLSRPVFISANQRDSLRAAARRIAAKHRPFRASFS-TFSVLTNDERTRTFLALDVGAGFQQLNDIVQDVNSALRAMHQDTYYDDPRFHASIA 210          
BLAST of jgi.p|Trimin1|347404 vs. uniprot
Match: A0A8H5FWS7_9AGAR (U6 snRNA phosphodiesterase 1 n=1 Tax=Tetrapyrgos nigripes TaxID=182062 RepID=A0A8H5FWS7_9AGAR)

HSP 1 Score: 73.2 bits (178), Expect = 4.430e-11
Identity = 40/95 (42.11%), Postives = 58/95 (61.05%), Query Frame = 0
Query:  168 VHLSLSRPFALRAHQLEPFAARLRRAAAGARAFRCEVSGAYEVLVNDDRTRSFVCLKVVGGCAPILALIGRVNEALADFQQQTYYEDPKLHISVA 262
            +H+SLS+P  LRAHQ E F   +R  A    AF+   +  + VLVND++TR+F+ L V  G   + AL+  ++  L  F+Q+ YY DPK H S+A
Sbjct:   85 LHISLSKPVFLRAHQREEFKQAIRLLAQRDTAFKLSFT-TFSVLVNDEKTRAFLALDVGAGHHELKALVEGISPTLKSFRQKDYYSDPKFHASIA 178          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|347404 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CMF3_9STRA5.970e-190100.00U6 snRNA phosphodiesterase 1 n=1 Tax=Tribonema min... [more]
D7FRL4_ECTSI1.120e-1831.91U6 snRNA phosphodiesterase 1 n=1 Tax=Ectocarpus si... [more]
A0A7S2UZE3_9STRA1.160e-1749.47U6 snRNA phosphodiesterase 1 n=1 Tax=Fibrocapsa ja... [more]
A0A5D6XW39_9STRA4.050e-1550.00U6 snRNA phosphodiesterase 1 n=1 Tax=Pythium brass... [more]
A0A6A4AHD6_9STRA1.010e-1248.45U6 snRNA phosphodiesterase n=4 Tax=Phytophthora Ta... [more]
G4YH94_PHYSP1.230e-1245.54U6 snRNA phosphodiesterase n=1 Tax=Phytophthora so... [more]
A0A8K1FRB5_PYTOL2.100e-1245.83Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
M4B6T3_HYAAE8.350e-1245.83U6 snRNA phosphodiesterase n=1 Tax=Hyaloperonospor... [more]
A0A165P220_EXIGL1.660e-1143.43U6 snRNA phosphodiesterase 1 n=1 Tax=Exidia glandu... [more]
A0A8H5FWS7_9AGAR4.430e-1142.11U6 snRNA phosphodiesterase 1 n=1 Tax=Tetrapyrgos n... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR027521U6 snRNA phosphodiesterase 1PFAMPF09749HVSLcoord: 168..268
e-value: 5.3E-22
score: 78.4
IPR027521U6 snRNA phosphodiesterase 1PANTHERPTHR13522UNCHARACTERIZEDcoord: 165..280
coord: 17..75
NoneNo IPR availableGENE3D3.90.1140.10Cyclic phosphodiesterasecoord: 25..309
e-value: 3.7E-38
score: 132.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 327..347
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..37
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 64..135
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 287..357

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_11contigContig_11:1193163..1197671 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|347404mRNA_4818Tribonema minus UTEX_B_3156 mRNAContig_11 1193163..1197965 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|347404|estExt_Genemark1.C_Ctg_110133 ID=Trimin1|347404|estExt_Genemark1.C_Ctg_110133|Name=jgi.p|Trimin1|347404|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=382bp
MDLLGAYDSGDSGSDSDAARSFQRAAPHERGRWPSHVHIAVPPSAELREL
SAAAIRHLEARLLRAAQAQQAPPPQQQRARKRPHAAAAPPAPRVIPHDAF
AVGGSSANGGGDGLRAGGGSGGGGSGGRGNSCSSGRGDGLRAGAAAAAAA
AAGGPRQGGEGEGGAGGVHLSLSRPFALRAHQLEPFAARLRRAAAGARAF
RCEVSGAYEVLVNDDRTRSFVCLKVVGGCAPILALIGRVNEALADFQQQT
YYEDPKLHISVASTYYEDPKLRISVASAAGDITQLLAAGEHTRRSGSHRS
GNNTADARSGDAGGGGGGDNDISPCSADDRGISSSLAGSSGAGGNGRVGS
SSEDEEEEVIDVDVTAFVLKAGFKTFTIELG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR027521Usb1