mRNA_4818 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|347404
Unique NamemRNA_4818
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|347404 vs. uniprot
Match: A0A836CMF3_9STRA (U6 snRNA phosphodiesterase 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMF3_9STRA)

HSP 1 Score: 538 bits (1385), Expect = 6.980e-188
Identity = 381/381 (100.00%), Postives = 381/381 (100.00%), Query Frame = 1 
Query:    1 MDLLGAYDSGDSGSDSDAARSFQRAAPHERGRWPSHVHIAVPPSAELRELSAAAIRHLEARLLRAAQAQQAXXXXXXXXXXXXXXXXXXXAPRVIPHDAFAVGGSSANGGGDGLRAXXXXXXXXXGGRGNSCXXXXXXXXXXXAAAXXXXXXXXPRQGXEGEGGAGGVHLSLSRPFALRAHQLEPFAARLRRAAAGARAFRCEVSGAYEVLVNDDRTRSFVCLKVVGGCAPILALIGRVNEALADFQQQTYYEDPKLHISVASXXXXXXXXXXXXXXAAGDITQLLAAGEHTRRSGSHRSGNNTADARSGDAGXXXXXDNDISPCSADDRGISSSLAGSSGXXXXXXVGXXXXXXXXEVIDVDVTAFVLKAGFKTFTIELG 1143
            MDLLGAYDSGDSGSDSDAARSFQRAAPHERGRWPSHVHIAVPPSAELRELSAAAIRHLEARLLRAAQAQQAXXXXXXXXXXXXXXXXXXXAPRVIPHDAFAVGGSSANGGGDGLRAXXXXXXXXXGGRGNSCXXXXXXXXXXXAAAXXXXXXXXPRQGXEGEGGAGGVHLSLSRPFALRAHQLEPFAARLRRAAAGARAFRCEVSGAYEVLVNDDRTRSFVCLKVVGGCAPILALIGRVNEALADFQQQTYYEDPKLHISVASXXXXXXXXXXXXXXAAGDITQLLAAGEHTRRSGSHRSGNNTADARSGDAGXXXXXDNDISPCSADDRGISSSLAGSSGXXXXXXVGXXXXXXXXEVIDVDVTAFVLKAGFKTFTIELG
Sbjct:    1 MDLLGAYDSGDSGSDSDAARSFQRAAPHERGRWPSHVHIAVPPSAELRELSAAAIRHLEARLLRAAQAQQAXXXXXXXXXXXXXXXXXXXAPRVIPHDAFAVGGSSANGGGDGLRAXXXXXXXXXGGRGNSCXXXXXXXXXXXAAAXXXXXXXXPRQGXEGEGGAGGVHLSLSRPFALRAHQLEPFAARLRRAAAGARAFRCEVSGAYEVLVNDDRTRSFVCLKVVGGCAPILALIGRVNEALADFQQQTYYEDPKLHISVASXXXXXXXXXXXXXXAAGDITQLLAAGEHTRRSGSHRSGNNTADARSGDAGXXXXXDNDISPCSADDRGISSSLAGSSGXXXXXXVGXXXXXXXXEVIDVDVTAFVLKAGFKTFTIELG 381
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BLAST of jgi.p|Trimin1|347404 vs. uniprot
Match: D7FRL4_ECTSI (U6 snRNA phosphodiesterase 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRL4_ECTSI)

HSP 1 Score: 95.5 bits (236), Expect = 2.740e-18
Identity = 75/235 (31.91%), Postives = 101/235 (42.98%), Query Frame = 1 
Query:   70 RAAPHERGRWPSHVHIAVPPSAELRELSAAAIRHLEARLLRAAQAQQAXXXXXXXXXXXXXXXXXXXAPRVIPHDAFAVGGSSANGGGDGLRAXXXXXXXXXGGRGNSCXXXXXXXXXXXAAAXXXXXXXXPRQGXEGEGGAGGVHLSLSRPFALRAHQLEPFAARLRRAAAGARAFRCEVSGAYEVLVNDDRTRSFVCLKVVGGCAPILALIGRVNEALADFQQQTYYEDPKLH 774
            R  PHERG WP+HV I VP SA  + ++ A++ H   RL                                    A+  G   A GG  G +           GR  S            A+A        P         +G  HLSLS+  ALRAHQ+ PF   L+ A   +R+F       Y+VLVN+D+TRSFVCL+V GG   +L+LI +V+  +  F+Q  YYE   +H
Sbjct:   75 RRFPHERGNWPTHVFIPVPNSAAFKSMAEASVSHFRQRLA----------------------------------TAWREGHGRAEGGKGGKKRTRD-------GRQRS----------NQASASSAGKLDPPEVVMNDMDPSGRQHLSLSKTTALRAHQINPFVRGLKEAVKSSRSFTASFVSGYDVLVNEDKTRSFVCLRVRGGRQMVLSLIAKVDPLMRRFKQSEYYEVIIMH 258
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BLAST of jgi.p|Trimin1|347404 vs. uniprot
Match: A0A7S2UZE3_9STRA (U6 snRNA phosphodiesterase 1 n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZE3_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 2.500e-17
Identity = 47/95 (49.47%), Postives = 63/95 (66.32%), Query Frame = 1 
Query:  505 HLSLSRPFALRAHQLEPFAARLRRAAAGARAFRCEVSGAYEVLVNDDRTRSFVCLKVVGGCAPILALIGRVNEALADFQQQTYYEDPKLHISVAS 789
            H+SLSRPF LR H ++P  A L++A + A +F  EV G +EVL ND  TRSFVCLK+  G + +  L+ RV+  L  F+   YY++ K HISVAS
Sbjct:   71 HISLSRPFVLRYHHIDPLVAALQQALSSAPSFTVEVQGEWEVLTNDQGTRSFVCLKIGPGSSLLEDLVDRVDGVLQKFRAPVYYQEKKFHISVAS 165
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BLAST of jgi.p|Trimin1|347404 vs. uniprot
Match: A0A5D6XW39_9STRA (U6 snRNA phosphodiesterase 1 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XW39_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 7.760e-15
Identity = 49/98 (50.00%), Postives = 61/98 (62.24%), Query Frame = 1 
Query:  496 GGVHLSLSRPFALRAHQLEPFAARLRRAAAGARAFRCEVSGAYEVLVNDDRTRSFVCLKVVGGCAPILALIGRVNEALADFQQQTYYEDPKLHISVAS 789
            GGVHLSLSRPF LR  Q+ PF   LR A    R F   ++GA  VLVND+RTRSF+ L+V  G   +LA +  V+  +  F    YYEDP  H+S+AS
Sbjct:  113 GGVHLSLSRPFTLRYEQITPFVLELRAALKWRRRFVLSLAGA-TVLVNDERTRSFLALRVADGEREVLATLKCVDACMKHFALPVYYEDPIPHVSIAS 209
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BLAST of jgi.p|Trimin1|347404 vs. uniprot
Match: A0A6A4AHD6_9STRA (U6 snRNA phosphodiesterase n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A4AHD6_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 1.730e-12
Identity = 47/97 (48.45%), Postives = 61/97 (62.89%), Query Frame = 1 
Query:  499 GVHLSLSRPFALRAHQLEPFAARLRRAAAGARAFRCEVSGAYEVLVNDDRTRSFVCLKVVGGCAPILALIGRVNEALADFQQQTYYEDPKLHISVAS 789
            G+HLSLSRPF L   Q+E F   LR A    + F   + GA  VLVNDDRTRSF+ L+V  G   +  ++  V++ LA F+  TYYEDP  H+S+AS
Sbjct:  122 GLHLSLSRPFVLTFDQIEGFVDSLRSALKWRQRFSVTLQGAL-VLVNDDRTRSFLSLRVSEGEQQLKQVLRCVDQCLARFELPTYYEDPIPHVSIAS 217
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BLAST of jgi.p|Trimin1|347404 vs. uniprot
Match: G4YH94_PHYSP (U6 snRNA phosphodiesterase n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YH94_PHYSP)

HSP 1 Score: 77.4 bits (189), Expect = 2.050e-12
Identity = 46/101 (45.54%), Postives = 61/101 (60.40%), Query Frame = 1 
Query:  487 GGAGGVHLSLSRPFALRAHQLEPFAARLRRAAAGARAFRCEVSGAYEVLVNDDRTRSFVCLKVVGGCAPILALIGRVNEALADFQQQTYYEDPKLHISVAS 789
            G  GG+HLSLSR F L   Q+E F   L  A    + F   + GA  VLVNDD+TRSF+ L+V  G      ++  V++ LA F+Q TYY+DP  H+S+AS
Sbjct:  116 GSGGGLHLSLSRAFILTYDQIEGFVDSLHTALKWRQRFSVTLEGAL-VLVNDDKTRSFLALRVSAGAQQFNQVLRCVDQCLACFKQPTYYQDPIPHVSIAS 215
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BLAST of jgi.p|Trimin1|347404 vs. uniprot
Match: A0A8K1FRB5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FRB5_PYTOL)

HSP 1 Score: 77.0 bits (188), Expect = 3.530e-12
Identity = 44/96 (45.83%), Postives = 58/96 (60.42%), Query Frame = 1 
Query:  502 VHLSLSRPFALRAHQLEPFAARLRRAAAGARAFRCEVSGAYEVLVNDDRTRSFVCLKVVGGCAPILALIGRVNEALADFQQQTYYEDPKLHISVAS 789
            +H+SLSRPF L   Q+EPF   LR A    R F   V     VLVND+RTRSF+ L++  G    +  +  V++ + DFQ  TYYEDP  H+S+AS
Sbjct:  103 LHMSLSRPFVLTYEQIEPFVEALRAALKWRRRFALTVEEP-TVLVNDERTRSFLALQLDAGKQEFVKTVRCVDQCMQDFQLPTYYEDPIPHVSIAS 197
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BLAST of jgi.p|Trimin1|347404 vs. uniprot
Match: M4B6T3_HYAAE (U6 snRNA phosphodiesterase n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B6T3_HYAAE)

HSP 1 Score: 75.5 bits (184), Expect = 1.380e-11
Identity = 44/96 (45.83%), Postives = 61/96 (63.54%), Query Frame = 1 
Query:  502 VHLSLSRPFALRAHQLEPFAARLRRAAAGARAFRCEVSGAYEVLVNDDRTRSFVCLKVVGGCAPILALIGRVNEALADFQQQTYYEDPKLHISVAS 789
            +HLSLSRPF L   Q+  F   LR A    + F   +  +  VL+NDD+TRSF+ L+VV G + I+ L+ RV++ LA F Q  YY+DP  H+S+AS
Sbjct:  121 LHLSLSRPFVLTYDQISAFVDSLRAALKWRQRFSITLRRSL-VLLNDDKTRSFLALRVVEGGSDIVNLLQRVDQCLARFGQPVYYQDPIPHVSIAS 215
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BLAST of jgi.p|Trimin1|347404 vs. uniprot
Match: A0A165P220_EXIGL (U6 snRNA phosphodiesterase 1 n=1 Tax=Exidia glandulosa HHB12029 TaxID=1314781 RepID=A0A165P220_EXIGL)

HSP 1 Score: 74.7 bits (182), Expect = 2.730e-11
Identity = 43/99 (43.43%), Postives = 58/99 (58.59%), Query Frame = 1 
Query:  490 GAGGVHLSLSRPFALRAHQLEPFAARLRRAAAGARAFRCEVSGAYEVLVNDDRTRSFVCLKVVGGCAPILALIGRVNEALADFQQQTYYEDPKLHISVA 786
            GA  +H+SLSRP  + A+Q +   A  RR AA  R FR   S  + VL ND+RTR+F+ L V  G   +  ++  VN AL    Q TYY+DP+ H S+A
Sbjct:  113 GAAELHISLSRPVFISANQRDSLRAAARRIAAKHRPFRASFS-TFSVLTNDERTRTFLALDVGAGFQQLNDIVQDVNSALRAMHQDTYYDDPRFHASIA 210
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BLAST of jgi.p|Trimin1|347404 vs. uniprot
Match: A0A8H5FWS7_9AGAR (U6 snRNA phosphodiesterase 1 n=1 Tax=Tetrapyrgos nigripes TaxID=182062 RepID=A0A8H5FWS7_9AGAR)

HSP 1 Score: 73.2 bits (178), Expect = 7.070e-11
Identity = 40/95 (42.11%), Postives = 58/95 (61.05%), Query Frame = 1 
Query:  502 VHLSLSRPFALRAHQLEPFAARLRRAAAGARAFRCEVSGAYEVLVNDDRTRSFVCLKVVGGCAPILALIGRVNEALADFQQQTYYEDPKLHISVA 786
            +H+SLS+P  LRAHQ E F   +R  A    AF+   +  + VLVND++TR+F+ L V  G   + AL+  ++  L  F+Q+ YY DPK H S+A
Sbjct:   85 LHISLSKPVFLRAHQREEFKQAIRLLAQRDTAFKLSFT-TFSVLVNDEKTRAFLALDVGAGHHELKALVEGISPTLKSFRQKDYYSDPKFHASIA 178
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|347404 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CMF3_9STRA6.980e-188100.00U6 snRNA phosphodiesterase 1 n=1 Tax=Tribonema min... [more]
D7FRL4_ECTSI2.740e-1831.91U6 snRNA phosphodiesterase 1 n=1 Tax=Ectocarpus si... [more]
A0A7S2UZE3_9STRA2.500e-1749.47U6 snRNA phosphodiesterase 1 n=1 Tax=Fibrocapsa ja... [more]
A0A5D6XW39_9STRA7.760e-1550.00U6 snRNA phosphodiesterase 1 n=1 Tax=Pythium brass... [more]
A0A6A4AHD6_9STRA1.730e-1248.45U6 snRNA phosphodiesterase n=4 Tax=Phytophthora Ta... [more]
G4YH94_PHYSP2.050e-1245.54U6 snRNA phosphodiesterase n=1 Tax=Phytophthora so... [more]
A0A8K1FRB5_PYTOL3.530e-1245.83Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
M4B6T3_HYAAE1.380e-1145.83U6 snRNA phosphodiesterase n=1 Tax=Hyaloperonospor... [more]
A0A165P220_EXIGL2.730e-1143.43U6 snRNA phosphodiesterase 1 n=1 Tax=Exidia glandu... [more]
A0A8H5FWS7_9AGAR7.070e-1142.11U6 snRNA phosphodiesterase 1 n=1 Tax=Tetrapyrgos n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_11contigContig_11:1193163..1197965 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|347404|estExt_Genemark1.C_Ctg_110133
GOsGO:0000175,GO:0002376,GO:0002520,GO:0002521,GO:0002573,GO:0003674,GO:0003824,GO:0004518,GO:0004527,GO:0004532,GO:0004540,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0006139,GO:0006396,GO:0006725,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0008380,GO:0008408,GO:0009987,GO:0010467,GO:0010468,GO:0016070,GO:0016073,GO:0016180,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0019219,GO:0019222,GO:0030097,GO:0030099,GO:0030154,GO:0030223,GO:0030851,GO:0031123,GO:0031323,GO:0032501,GO:0032502,GO:0034470,GO:0034472,GO:0034477,GO:0034641,GO:0034660,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043484,GO:0043628,GO:0044237,GO:0044238,GO:0044421,GO:0044424,GO:0044444,GO:0044464,GO:0045171,GO:0046483,GO:0048513,GO:0048534,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0140098,GO:1901360,GO:1990838
Preferred nameUSB1
DescriptionU6 snRNA 3'-end processing
COG categoryJ
Max annot lvl2759|Eukaryota
EggNOG OGsKOG3102@1|root,KOG3102@2759|Eukaryota
Evalue1.83e-19
Seed ortholog2880.D7FRL4
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionU6 snRNA phosphodiesterase Usb1
Ec32 orthologEc-12_002600.1
TranscriptId347726
TrackFilteredModels1
ProteinId347404
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|347404gene_4818Tribonema minus UTEX_B_3156 geneContig_11 1193163..1197965 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|347404Trimin1|347404|estExt_Genemark1.C_Ctg_110133Tribonema minus UTEX_B_3156 polypeptideContig_11 1193163..1197671 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_4818_1exon_4818_1Tribonema minus UTEX_B_3156 exonContig_11 1193163..1193219 +
exon_4818_2exon_4818_2Tribonema minus UTEX_B_3156 exonContig_11 1193762..1194178 +
exon_4818_3exon_4818_3Tribonema minus UTEX_B_3156 exonContig_11 1194199..1194389 +
exon_4818_4exon_4818_4Tribonema minus UTEX_B_3156 exonContig_11 1195442..1195485 +
exon_4818_5exon_4818_5Tribonema minus UTEX_B_3156 exonContig_11 1195962..1196041 +
exon_4818_6exon_4818_6Tribonema minus UTEX_B_3156 exonContig_11 1196132..1196173 +
exon_4818_7exon_4818_7Tribonema minus UTEX_B_3156 exonContig_11 1197357..1197965 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_4818CDS_4818Tribonema minus UTEX_B_3156 CDSContig_11 1193163..1193219 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_4818UTR3_4818Tribonema minus UTEX_B_3156 three_prime_UTRContig_11 1197672..1197965 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_4818 ID=mRNA_4818|Name=jgi.p|Trimin1|347404|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1440bp|location=Sequence derived from alignment at Contig_11:1193163..1197965+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGATCTGCTCGGCGCTTATGATTCAGGAGACTCTGGATCCGACAGCGA
TGCGGCGCGCAGCTTCCAGCGCGCCGCGCCGCACGAGCGCGGCCGCTGGC
CGTCCCACGTGCACATCGCCGTGCCGCCGAGCGCAGAGCTGCGCGAGCTG
AGCGCTGCTGCAATCCGCCACCTTGAGGCGCGGCTGCTGCGCGCAGCGCA
GGCCCAGCAGGCGCCGCCGCCGCAGCAGCAGCGCGCGCGCAAGCGGCCCC
ACGCCGCCGCCGCGCCGCCGGCCCCCCGCGTCATCCCCCACGACGCCTTT
GCCGTTGGTGGCAGCTCTGCCAATGGCGGAGGTGATGGGCTGCGAGCAGG
TGGCGGCAGCGGCGGCGGCGGCAGCGGCGGCAGGGGCAACAGCTGCAGCA
GTGGGCGGGGTGATGGGCTGCGAGCGGGGGCGGCGGCGGCGGCGGCGGCG
GCGGCAGGGGGGCCAAGGCAGGGGGGGGAGGGGGAGGGGGGGGCGGGGGG
CGTGCACCTGAGCCTGAGCCGGCCGTTTGCGCTGCGCGCGCACCAGCTGG
AGCCATTCGCGGCGCGGCTGCGGCGCGCGGCGGCGGGCGCGCGCGCATTC
CGCTGCGAGGTCTCCGGCGCGTACGAAGTGCTCGTGAACGACGACCGGAC
GCGCTCGTTCGTGTGCCTGAAGGTGGTCGGCGGCTGCGCGCCGATCCTGG
CACTCATAGGGAGGGTGAACGAGGCCCTGGCGGACTTCCAGCAGCAGACG
TACTACGAGGACCCCAAGCTGCACATCAGCGTCGCCTCGACGTACTATGA
GGATCCCAAGCTGCGCATCAGCGTCGCCTCGGCCGCAGGCGACATCACGC
AGCTCCTCGCGGCAGGAGAACACACGCGCCGCAGCGGCAGCCATCGCAGC
GGTAACAACACCGCCGACGCACGCAGCGGCGATGCCGGCGGCGGCGGCGG
CGGCGACAATGACATCAGCCCGTGCAGCGCCGATGACAGGGGCATCAGCA
GCAGCCTTGCGGGAAGTAGCGGTGCTGGTGGGAATGGCCGCGTCGGTAGC
AGCTCAGAGGATGAAGAGGAGGAGGTCATAGACGTCGATGTGACCGCGTT
TGTGCTGAAGGCGGGGTTCAAGACGTTCACCATCGAGCTGGGGTAGGCCG
CGGGCGTTGTGGCGCGGTGTGCGCCACGTGGCGCTGATGATGCTGCGCTC
AGGCTTTGCTGCAATCCCGGTCAATCGTACTTGCTTCAACGGCTGTGTGG
CCCGCGGCGATGACCGCTGCTTCTGCTCGTGTCACGATTGCCCGCAGGGA
TGCACACGTCCTCTCGCAGTGTACTTCACGGTGCGGTGCACGTGCTGAGC
GCTGATGGTGATGATGATGCGCTCAGGCTCGTCTGCATCCAGGTCAATCA
TTATTCAAAGAGATTCACCTCTCAACAAGGCACATCAAAG
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protein sequence of jgi.p|Trimin1|347404

>Trimin1|347404|estExt_Genemark1.C_Ctg_110133 ID=Trimin1|347404|estExt_Genemark1.C_Ctg_110133|Name=jgi.p|Trimin1|347404|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=382bp
MDLLGAYDSGDSGSDSDAARSFQRAAPHERGRWPSHVHIAVPPSAELREL
SAAAIRHLEARLLRAAQAQQAPPPQQQRARKRPHAAAAPPAPRVIPHDAF
AVGGSSANGGGDGLRAGGGSGGGGSGGRGNSCSSGRGDGLRAGAAAAAAA
AAGGPRQGGEGEGGAGGVHLSLSRPFALRAHQLEPFAARLRRAAAGARAF
RCEVSGAYEVLVNDDRTRSFVCLKVVGGCAPILALIGRVNEALADFQQQT
YYEDPKLHISVASTYYEDPKLRISVASAAGDITQLLAAGEHTRRSGSHRS
GNNTADARSGDAGGGGGGDNDISPCSADDRGISSSLAGSSGAGGNGRVGS
SSEDEEEEVIDVDVTAFVLKAGFKTFTIELG*
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mRNA from alignment at Contig_11:1193163..1197965+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4818 ID=mRNA_4818|Name=jgi.p|Trimin1|347404|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4803bp|location=Sequence derived from alignment at Contig_11:1193163..1197965+ (Tribonema minus UTEX_B_3156 )
ATGGATCTGCTCGGCGCTTATGATTCAGGAGACTCTGGATCCGACAGCGA
TGCGGCGGTACCGACTGCATCACCAGCGCGTGAGGTGTCATCAGCGATTC
TCACACAGAGTCTGCTGCCACCTCTGCCCAGCGATGTTGCATCCCTCTTC
AGCCAGAGCGAGTATGATCCCGCCAATGCCAGCAGAATGGCAAACCAAAG
GAAGGGACCGCACCCTCACGGGTGAGCTTCGCACCCTGATTGTCTGCTGA
ACGCTTGCATCCACGCGCCGTTCTTGCTGCAACATGGCAACATTCTTTTT
TGGCAATAGGTGTCTGAATGACATAGGCAATTGGTGTCTAAATGACATGG
TTGAATGGCATTAGTTGAACAGACTGCAGTCTCACATGCTGCAAGGAAGC
TACGAAACCTAGCTGAAGCGAGTTCAGTTACACCGCTGTCTCACGGCAGA
TGCTCATTCCTAACGCATATGCTACAAGCAGCAACAGCATTACAGCCCCA
ACTGGTTCTCACGTTCCTCGCCGCGGAGGTCAAATGCATCAGGGCTGTCA
CCATTTCACACTCACCCCCCCTCCCCTCGCCCCCCACGCGCGCGCGCAGC
GCAGCTTCCAGCGCGCCGCGCCGCACGAGCGCGGCCGCTGGCCGTCCCAC
GTGCACATCGCCGTGCCGCCGAGCGCAGAGCTGCGCGAGCTGAGCGCTGC
TGCAATCCGCCACCTTGAGGCGCGGCTGCTGCGCGCAGCGCAGGCCCAGC
AGGCGCCGCCGCCGCAGCAGCAGCGCGCGCGCAAGCGGCCCCACGCCGCC
GCCGCGCCGCCGGCCCCCCGCGTCATCCCCCACGACGCCTTTGCCGTTGG
TGGCAGCTCTGCCAATGGCGGAGGTGATGGGCTGCGAGCAGGTGGCGGCA
GCGGCGGCGGCGGCAGCGGCGGCAGGGGCAACAGCTGCAGCAGTGGGCGG
GGTGATGGGCTGCGAGCGGGGGCGGCGGCGGCGGCGGCGGCGGCGGCAGG
GGGGCCAAGGCAGGGGGTCGGGGTGCGGGCGCGGAGGGGGAGGGGGAGGG
GGGGGCGGGGGGCGTGCACCTGAGCCTGAGCCGGCCGTTTGCGCTGCGCG
CGCACCAGCTGGAGCCATTCGCGGCGCGGCTGCGGCGCGCGGCGGCGGGC
GCGCGCGCATTCCGCTGCGAGGTCTCCGGCGCGTACGAAGTGCTCGTGAA
CGACGACCGGACGCGCTCGTTCGTGTGGTGAGTGAGTACGCGAGTGACCG
AGTGAGTGTGTGGGCGAGCGAGTAAGTGAGTGAGTCCGCAACGGGGGCTG
GTCGGGATCCTGGGAGGGCGGGGTGGGAGCGCACGGTGCGCGTGCGTCGC
CTGCTGCGCTGCGTCATGGAGTAATGTGTCGATGACAGCCGCAAGCGCTC
GTTTGCGTGCGGCATTCGTGCCACATGTATGCCTTCAAGCACGCACGGCA
TTCGTGCACCATATGCTATCGGCGCGGCATGTGCTTTAGGGGGTGGCGTA
GCGTCACGGGTTGAAGTCCACAAATTGAAGTGATCGGCGGAACGCCGAGG
CCGGGGGCCCAACCTCGTGGTGGTGGTCGTGAGGCGACAGAGTATTGTGC
ACTGCAGGGTGCCCTCCGAGAAACGTATCTGTCGAAGCAACCATGCGTGC
AACAGCAGATTGGCCCATACGGATCTGTCGCTGGTCTGTCGTCGCCCGCG
TGTGCAGCATGAATCGTCTGTAGTAGGCGTAGAAGTCCCCGCACCCGACA
TGAAGTTGGGAGCGTGCAACCGCAAAGTGCTCAGGTTGTTGAAGGTGAGT
GCTGAAGTGACGCTGGCTCCGTCCGTACGCGCCAGACAGGGGAGTCAGCA
GCTTGCTGCTCTCACGCCATCTGCCCTGAGCGGCGGTGCGCCTTTTTAGC
TCATTGTTCCGCCAGAGATGGACAAACGAGAGACCCAGGCAGACGCGAGA
CTTGCGGCCACTCATCGATCAGTTTCTTGTTGCTAATAGTGATCATTGAG
CACCAGTAAAGCAAGAAAATTCCTGCATGAACAGGAACGTGAGTGCTCAG
CAGAACCCAACCTCAACATGTGCTCAGCTATGTGCTGTGAAGTAAGAAGC
GACCCCCCCCCCCCCCCCCTCCCCCCCCCCCCCCCCCCCCCCCCCAGCGG
TTGCCAACCTGCCGTTGCCCCTCGCTTCTCGTCTGCATCCGCTGGACTGG
GTGTTACGTGACAGAGACGGGATGCTGACGTTCGTCATGTTTTTGCCTCT
GCTGCGGTGTCTGCTTTTGCGCTACGCAGCCTGAAGGTGGTCGGCGGCTG
CGCGCCGATCCTGGCACTCATAGGTGAGTGAGTGAGTGAGTGAGTCATGG
AGTCATGGAGTCATGGTCGATCCACGCAGTACCTCCAAACGCGTACACAC
TGGCAGCCAGAGTGTACGGGTGGGCAGGAGTGAGGGCAGCTTGGGTGGAA
TTTGGGGCGGAGCAATCGGCCGTTGCATGCGGCACTTCGCAGCAGCCAAA
GTGCCCAGGAACGACACGCAGTGCTTATGACATTTAATGTGTTTCGCGTG
CAGGAGAGCAAGCGTCGCCGCAGCCGGAGCGCGGCGTCACCGGCATGCAG
CAGCGTCGTGTAAGTGCAGCTTTGCGCCCCTCATGCACCTCTGCCGAGCG
CTGCCATCCGGACGCCGTGCGCTCCACGTGAGTTTCCAACTGCCGCAGAG
GCGCGCTGTCTAACTTCAGCTATGACCCTCGAGTTCACACTGCGTGCGCC
CCTTCGATGCCCCCTCCCCCCCCCCCCGTGTGTGTGCACGCGCGTGCAGG
GAGGGTGAACGAGGCCCTGGCGGACTTCCAGCAGCAGACGTACTACGAGG
ACCCCAAGCTGCACATCAGCGTCGCCTCGGTACGTGATGGTGGCGCGACG
CTCCCATTGTTGAAGTTCGTCAGGTGGTGCCTGCCTGCAACTGCCGCACC
AATCTTGGACCTGAAGCAGACGTACTATGAGGATCCCAAGCTGCGCATCA
GCGTCGCCTCGGTACGTGACGGCGGCGACGTTCCATTTGTTGAAGTTTGA
CAGGCGGCTGTTCGCAACTGCCGCGCCATTCTTGGACCGCAAGTTGCCAC
ATCAGCGGGACCATGGTGCGCACGATGGAGGGGCATGTGTCTGCTGGCTT
GACAGGGACCGCCAGCTGCAGGGACACGGAGCAGTTGATGTGCGCAACAA
GCTGCATTTCAGCGTCGCCTCGGAGCGTGACGACGGTGACGCTCCTGCAT
CATTTGTCGCTCTGACCGTCACGGTTCTGTGGCGCACCTAACCCCAACCT
AACCCTAAACCTACTCCTAGACCTAAAGCTAACCCTAGTGCCCCCCCCTC
TTCGGACCGCGCGGCAGGGCCCATTCAGGTTTCGGATTAGGGTGAGGGTC
ATATTAGGGTTGATGATAGGTTAGCGCTTTCTCGCCAACTATAACGCTAC
TTCAGCTGCTGGATGCATCGATTGCACAGGCATACCATCTGGTAGATGCT
GTGACAAGCAAACTGGGCTGCAAAAAGCGGATGGCAAACCCTAATATGTC
ATCTAACTTGTCCGTACGGCCCGTAGGTGACCGCCGCCAGCTTTCAGAAC
CCGCCAGACTGGCGTTGTTGCCAGAGGTGTCTACGTTGGTTTTCTGATTC
TGCGATGGCCATACACCCTCTTAGTGTAGTGCCCGCTTCGCGTGCTTGAT
GCGCGCTGCCATCCCACGCTCTTAGGGTTAGGGTTAGGGCTAGGGTTAGC
CGCCCACTTGAGGTTAGGTCAGACTCAGGTTAGCTGAGGCTTGGGCTCCC
ATGTGGGTTAGCGTAAGGTTAGTGTTAGGCCGCGGCACCACCTCACATTG
TACAACATAATACAAAACACATGGTGGATGCAAGCGGTGACATGCTTGTG
ACTGCAGCCCGTTCGCTCAGGAGCCGTACCACGTGCACTGCAGTGCGCGC
CATGCTGGTGCTCGGGTCGAATGCGTGGCCGTCCAGACCGAGCCTGTCGG
CGTGAAGTGCGCAGCCTAACCCTAACCCCAACTGTATCACCAGGCACCCG
TACGCGCGGTTACAGCGGTTGACTTGCCTTGCGTCAACGCGCGCGTGTGT
CGTGTCGTGGCATTGGCGTGGCTGCGCGCGCAGTGCATGTGCCACTCCTC
AATTGCGACCTCACTGCCGCTCGTGCGCTGCATCGCCCATGCAGGCCGCA
GGCGACATCACGCAGCTCCTCGCGGCAGGAGAACACACGCGCCGCAGCGG
CAGCCATCGCAGCGGTAACAACACCGCCGACGCACGCAGCGGCGATGCCG
GCGGCGGCGGCGGCGGCGACAATGACATCAGCCCGTGCAGCGCCGATGAC
AGGGGCATCAGCAGCAGCCTTGCGGGAAGTAGCGGTGCTGGTGGGAATGG
CCGCGTCGGTAGCAGCTCAGAGGATGAAGAGGAGGAGGTCATAGACGTCG
ATGTGACCGCGTTTGTGCTGAAGGCGGGGTTCAAGACGTTCACCATCGAG
CTGGGGTAGGCCGCGGGCGTTGTGGCGCGGTGTGCGCCACGTGGCGCTGA
TGATGCTGCGCTCAGGCTTTGCTGCAATCCCGGTCAATCGTACTTGCTTC
AACGGCTGTGTGGCCCGCGGCGATGACCGCTGCTTCTGCTCGTGTCACGA
TTGCCCGCAGGGATGCACACGTCCTCTCGCAGTGTACTTCACGGTGCGGT
GCACGTGCTGAGCGCTGATGGTGATGATGATGCGCTCAGGCTCGTCTGCA
TCCAGGTCAATCATTATTCAAAGAGATTCACCTCTCAACAAGGCACATCA
AAG
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Coding sequence (CDS) from alignment at Contig_11:1193163..1197965+

>mRNA_4818 ID=mRNA_4818|Name=jgi.p|Trimin1|347404|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1146bp|location=Sequence derived from alignment at Contig_11:1193163..1197965+ (Tribonema minus UTEX_B_3156 )
ATGGATCTGCTCGGCGCTTATGATTCAGGAGACTCTGGATCCGACAGCGA
TGCGGCGCGCAGCTTCCAGCGCGCCGCGCCGCACGAGCGCGGCCGCTGGC
CGTCCCACGTGCACATCGCCGTGCCGCCGAGCGCAGAGCTGCGCGAGCTG
AGCGCTGCTGCAATCCGCCACCTTGAGGCGCGGCTGCTGCGCGCAGCGCA
GGCCCAGCAGGCGCCGCCGCCGCAGCAGCAGCGCGCGCGCAAGCGGCCCC
ACGCCGCCGCCGCGCCGCCGGCCCCCCGCGTCATCCCCCACGACGCCTTT
GCCGTTGGTGGCAGCTCTGCCAATGGCGGAGGTGATGGGCTGCGAGCAGG
TGGCGGCAGCGGCGGCGGCGGCAGCGGCGGCAGGGGCAACAGCTGCAGCA
GTGGGCGGGGTGATGGGCTGCGAGCGGGGGCGGCGGCGGCGGCGGCGGCG
GCGGCAGGGGGGCCAAGGCAGGGGGGGGAGGGGGAGGGGGGGGCGGGGGG
CGTGCACCTGAGCCTGAGCCGGCCGTTTGCGCTGCGCGCGCACCAGCTGG
AGCCATTCGCGGCGCGGCTGCGGCGCGCGGCGGCGGGCGCGCGCGCATTC
CGCTGCGAGGTCTCCGGCGCGTACGAAGTGCTCGTGAACGACGACCGGAC
GCGCTCGTTCGTGTGCCTGAAGGTGGTCGGCGGCTGCGCGCCGATCCTGG
CACTCATAGGGAGGGTGAACGAGGCCCTGGCGGACTTCCAGCAGCAGACG
TACTACGAGGACCCCAAGCTGCACATCAGCGTCGCCTCGACGTACTATGA
GGATCCCAAGCTGCGCATCAGCGTCGCCTCGGCCGCAGGCGACATCACGC
AGCTCCTCGCGGCAGGAGAACACACGCGCCGCAGCGGCAGCCATCGCAGC
GGTAACAACACCGCCGACGCACGCAGCGGCGATGCCGGCGGCGGCGGCGG
CGGCGACAATGACATCAGCCCGTGCAGCGCCGATGACAGGGGCATCAGCA
GCAGCCTTGCGGGAAGTAGCGGTGCTGGTGGGAATGGCCGCGTCGGTAGC
AGCTCAGAGGATGAAGAGGAGGAGGTCATAGACGTCGATGTGACCGCGTT
TGTGCTGAAGGCGGGGTTCAAGACGTTCACCATCGAGCTGGGGTAG
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