mRNA_2359 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|158382
Unique NamemRNA_2359
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|158382 vs. uniprot
Match: A0A836CBN4_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBN4_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 3.320e-15
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 1 
Query:    1 MKTVHHGIKDVCCLQEGCGKMFSAKGNMKVHYNS 102
            MKTVHHGIKDVCCLQEGCGKMFSAKGNMKVHYNS
Sbjct:    1 MKTVHHGIKDVCCLQEGCGKMFSAKGNMKVHYNS 34
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|158382 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CBN4_9STRA3.320e-15100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_5contigContig_5:1008473..1009066 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|158382|e_gw1.5.121.1
Hectar predicted targeting categoryother localisation
TranscriptId158704
TrackFilteredModels1
ProteinId158382
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|158382gene_2359Tribonema minus UTEX_B_3156 geneContig_5 1008473..1009066 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_2359_1exon_2359_1Tribonema minus UTEX_B_3156 exonContig_5 1008473..1009066 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_2359CDS_2359Tribonema minus UTEX_B_3156 CDSContig_5 1008473..1009066 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|158382Trimin1|158382|e_gw1.5.121.1Tribonema minus UTEX_B_3156 polypeptideContig_5 1008473..1009066 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_2359 ID=mRNA_2359|Name=jgi.p|Trimin1|158382|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=594bp|location=Sequence derived from alignment at Contig_5:1008473..1009066+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGACCGTCCACCATGGCATCAAAGATGTTTGCTGCCTGCAGGAGGG
TTGTGGTAAGATGTTCTCTGCCAAGGGTAACATGAAAGTTCACTACAACT
CTGTCCACCTTGGCATCAAGAATATATCCTGCCCACAGGAAGGATGCAGT
CAGACGTTCACCACCACACAGAACATGGATGTTCACGTAAAAGCGGTCCA
CCTTGGCATTAAGGATATATCCTGCCCGCAAGAAGGCTGCAGCCAGACGT
TCACTACTCAACAGAGCATGACAAACCATGTGAATGGGGTTCATCTTGGC
ATGAGGGACGTCCGTTGCCCGCAGGAGGGATGTGGCCAAATGTTTTTCAA
CAAGAGCGCTGTGCAGAAGCATGTCAATGTGGTTCACCTGGGCATCAAAG
ACATCCCCTGCTCACATGGATGTGGGAAGGTGTTCTCCAACACCAGCAAC
ATGCAAGCCCATGTGAAAGGAGTGCACCTCGGCACCAAGGACATCGCCTG
TTCACACGAGGGATGCAAGAAGATGTTCTCCGCGAAGGCAGACATGCAGA
AGCATGTCAAATGCGTCCACCTCGGTGTGAAGGACATCGACTGC
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protein sequence of jgi.p|Trimin1|158382

>Trimin1|158382|e_gw1.5.121.1 ID=Trimin1|158382|e_gw1.5.121.1|Name=jgi.p|Trimin1|158382|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=198bp
MKTVHHGIKDVCCLQEGCGKMFSAKGNMKVHYNSVHLGIKNISCPQEGCS
QTFTTTQNMDVHVKAVHLGIKDISCPQEGCSQTFTTQQSMTNHVNGVHLG
MRDVRCPQEGCGQMFFNKSAVQKHVNVVHLGIKDIPCSHGCGKVFSNTSN
MQAHVKGVHLGTKDIACSHEGCKKMFSAKADMQKHVKCVHLGVKDIDC
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mRNA from alignment at Contig_5:1008473..1009066+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2359 ID=mRNA_2359|Name=jgi.p|Trimin1|158382|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=594bp|location=Sequence derived from alignment at Contig_5:1008473..1009066+ (Tribonema minus UTEX_B_3156 )
ATGAAGACCGTCCACCATGGCATCAAAGATGTTTGCTGCCTGCAGGAGGG
TTGTGGTAAGATGTTCTCTGCCAAGGGTAACATGAAAGTTCACTACAACT
CTGTCCACCTTGGCATCAAGAATATATCCTGCCCACAGGAAGGATGCAGT
CAGACGTTCACCACCACACAGAACATGGATGTTCACGTAAAAGCGGTCCA
CCTTGGCATTAAGGATATATCCTGCCCGCAAGAAGGCTGCAGCCAGACGT
TCACTACTCAACAGAGCATGACAAACCATGTGAATGGGGTTCATCTTGGC
ATGAGGGACGTCCGTTGCCCGCAGGAGGGATGTGGCCAAATGTTTTTCAA
CAAGAGCGCTGTGCAGAAGCATGTCAATGTGGTTCACCTGGGCATCAAAG
ACATCCCCTGCTCACATGGATGTGGGAAGGTGTTCTCCAACACCAGCAAC
ATGCAAGCCCATGTGAAAGGAGTGCACCTCGGCACCAAGGACATCGCCTG
TTCACACGAGGGATGCAAGAAGATGTTCTCCGCGAAGGCAGACATGCAGA
AGCATGTCAAATGCGTCCACCTCGGTGTGAAGGACATCGACTGC
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Coding sequence (CDS) from alignment at Contig_5:1008473..1009066+

>mRNA_2359 ID=mRNA_2359|Name=jgi.p|Trimin1|158382|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=594bp|location=Sequence derived from alignment at Contig_5:1008473..1009066+ (Tribonema minus UTEX_B_3156 )
ATGAAGACCGTCCACCATGGCATCAAAGATGTTTGCTGCCTGCAGGAGGG
TTGTGGTAAGATGTTCTCTGCCAAGGGTAACATGAAAGTTCACTACAACT
CTGTCCACCTTGGCATCAAGAATATATCCTGCCCACAGGAAGGATGCAGT
CAGACGTTCACCACCACACAGAACATGGATGTTCACGTAAAAGCGGTCCA
CCTTGGCATTAAGGATATATCCTGCCCGCAAGAAGGCTGCAGCCAGACGT
TCACTACTCAACAGAGCATGACAAACCATGTGAATGGGGTTCATCTTGGC
ATGAGGGACGTCCGTTGCCCGCAGGAGGGATGTGGCCAAATGTTTTTCAA
CAAGAGCGCTGTGCAGAAGCATGTCAATGTGGTTCACCTGGGCATCAAAG
ACATCCCCTGCTCACATGGATGTGGGAAGGTGTTCTCCAACACCAGCAAC
ATGCAAGCCCATGTGAAAGGAGTGCACCTCGGCACCAAGGACATCGCCTG
TTCACACGAGGGATGCAAGAAGATGTTCTCCGCGAAGGCAGACATGCAGA
AGCATGTCAAATGCGTCCACCTCGGTGTGAAGGACATCGACTGC
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