mRNA_2424 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|158339
Unique NamemRNA_2424
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|158339 vs. uniprot
Match: A0A836CB44_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB44_9STRA)

HSP 1 Score: 281 bits (718), Expect = 1.900e-89
Identity = 345/345 (100.00%), Postives = 345/345 (100.00%), Query Frame = 1 
Query:    1 MPAKLCSIDDCTKQAVKGGDATEFCVKHGGGDRCQYIDAEGNSCGSASKTDKKTETGAVGMXXXXXXXXXXXXXXXXXXXXXASAVTSKTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQIDHCCAGDSFAYGSHPEDGRGMCTHAMRCLVRDQTDEDERKALMRHFGFKQDLVMRGEHAFYHRVAQLVPDVIRCDGTGIRPSPGQGVHDAAC 1035
            MPAKLCSIDDCTKQAVKGGDATEFCVKHGGGDRCQYIDAEGNSCGSASKTDKKTETGAVGMXXXXXXXXXXXXXXXXXXXXXASAVTSKTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQIDHCCAGDSFAYGSHPEDGRGMCTHAMRCLVRDQTDEDERKALMRHFGFKQDLVMRGEHAFYHRVAQLVPDVIRCDGTGIRPSPGQGVHDAAC
Sbjct:    1 MPAKLCSIDDCTKQAVKGGDATEFCVKHGGGDRCQYIDAEGNSCGSASKTDKKTETGAVGMXXXXXXXXXXXXXXXXXXXXXASAVTSKTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQIDHCCAGDSFAYGSHPEDGRGMCTHAMRCLVRDQTDEDERKALMRHFGFKQDLVMRGEHAFYHRVAQLVPDVIRCDGTGIRPSPGQGVHDAAC 345
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BLAST of jgi.p|Trimin1|158339 vs. uniprot
Match: A0A836CIX9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIX9_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 3.970e-8
Identity = 25/39 (64.10%), Postives = 30/39 (76.92%), Query Frame = 1 
Query:   16 CSIDDCTKQAVKGGDATEFCVKHGGGDRCQYIDAEGNSC 132
            C ++ CTKQAV    +TEFCV HGGGDRCQ++D  GNSC
Sbjct:    1 CEVNGCTKQAVLRSGSTEFCVMHGGGDRCQHVDEGGNSC 39
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|158339 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A836CB44_9STRA1.900e-89100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CIX9_9STRA3.970e-864.10Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_5contigContig_5:1431990..1433027 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|158339|e_gw1.5.222.1
Hectar predicted targeting categoryother localisation
TranscriptId158661
TrackFilteredModels1
ProteinId158339
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|158339gene_2424Tribonema minus UTEX_B_3156 geneContig_5 1431990..1433027 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_2424_1exon_2424_1Tribonema minus UTEX_B_3156 exonContig_5 1431990..1433027 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_2424CDS_2424Tribonema minus UTEX_B_3156 CDSContig_5 1431990..1433027 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|158339Trimin1|158339|e_gw1.5.222.1Tribonema minus UTEX_B_3156 polypeptideContig_5 1431990..1433027 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_2424 ID=mRNA_2424|Name=jgi.p|Trimin1|158339|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1038bp|location=Sequence derived from alignment at Contig_5:1431990..1433027- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTGCCAAGCTGTGTTCAATCGATGACTGCACAAAGCAAGCCGTAAA
GGGCGGTGACGCCACAGAGTTTTGTGTGAAGCATGGTGGCGGTGATCGCT
GCCAGTACATTGATGCAGAAGGCAACTCCTGTGGGTCCGCATCGAAGACT
GACAAGAAGACTGAAACTGGTGCTGTCGGCATGTGCATCAAGCACGGTGG
CGGCGATCGCTGTCAGCACGACGACGAAGGACACAAGCCTTGTGGCGCAT
CTGCTGTAACCAGTAAGACCGGGACCGGCGTCGTCGGCATGTGTGTTAAG
CACGGCGGCGACGATCGCTGCCAATATGTCGATGAAGAAATCAACGCTTG
CGGATCCTCTGTGACACGCAGTAAGACAGGGGTCGGCGCTGTCGGTATGT
GCTTCAAGCACGGTAACGGCGATCGCTGTCAGCACGTCGACGAAGTCGGT
AACATTTGTGTGTCCTCTATGGAGAGCAGCAAGACCGGAACTGGCACAGC
CGGCATGTGCATCAAGCATGGTGGCGGCGATCGCTGTCAGTACATTGACG
ATGGAGGCAACTCTTGTAAGGCATCATCTGCAACTAGTAAGGCCGGAACC
GGCGTTGTGGGTATGTGTAAGAGGCATGGTGGCGGTGATCGCTGTCGGCA
TGTTGACGAAGAAGGCAACTCTTGTGGGTCCTCTGCACAGACTAGCAAGA
CCGGAACTGGCGCAGCTAACATGTGCACCACACACGGTGGCGGCGATCGC
TGCCAGATCGACCATTGCTGCGCAGGAGATTCATTTGCATATGGAAGTCA
TCCTGAGGATGGGAGGGGCATGTGCACACACGCCATGCGCTGCCTCGTGC
GCGACCAGACCGACGAGGACGAGAGGAAGGCGTTGATGCGCCACTTCGGC
TTCAAGCAGGACCTGGTCATGAGAGGAGAGCACGCCTTCTACCACCGTGT
AGCGCAGCTGGTACCTGATGTGATCAGATGTGATGGAACCGGCATTCGCC
CATCACCTGGCCAAGGTGTTCACGACGCTGCTTGTTGA
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protein sequence of jgi.p|Trimin1|158339

>Trimin1|158339|e_gw1.5.222.1 ID=Trimin1|158339|e_gw1.5.222.1|Name=jgi.p|Trimin1|158339|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=346bp
MPAKLCSIDDCTKQAVKGGDATEFCVKHGGGDRCQYIDAEGNSCGSASKT
DKKTETGAVGMCIKHGGGDRCQHDDEGHKPCGASAVTSKTGTGVVGMCVK
HGGDDRCQYVDEEINACGSSVTRSKTGVGAVGMCFKHGNGDRCQHVDEVG
NICVSSMESSKTGTGTAGMCIKHGGGDRCQYIDDGGNSCKASSATSKAGT
GVVGMCKRHGGGDRCRHVDEEGNSCGSSAQTSKTGTGAANMCTTHGGGDR
CQIDHCCAGDSFAYGSHPEDGRGMCTHAMRCLVRDQTDEDERKALMRHFG
FKQDLVMRGEHAFYHRVAQLVPDVIRCDGTGIRPSPGQGVHDAAC*
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mRNA from alignment at Contig_5:1431990..1433027-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2424 ID=mRNA_2424|Name=jgi.p|Trimin1|158339|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1038bp|location=Sequence derived from alignment at Contig_5:1431990..1433027- (Tribonema minus UTEX_B_3156 )
ATGCCTGCCAAGCTGTGTTCAATCGATGACTGCACAAAGCAAGCCGTAAA
GGGCGGTGACGCCACAGAGTTTTGTGTGAAGCATGGTGGCGGTGATCGCT
GCCAGTACATTGATGCAGAAGGCAACTCCTGTGGGTCCGCATCGAAGACT
GACAAGAAGACTGAAACTGGTGCTGTCGGCATGTGCATCAAGCACGGTGG
CGGCGATCGCTGTCAGCACGACGACGAAGGACACAAGCCTTGTGGCGCAT
CTGCTGTAACCAGTAAGACCGGGACCGGCGTCGTCGGCATGTGTGTTAAG
CACGGCGGCGACGATCGCTGCCAATATGTCGATGAAGAAATCAACGCTTG
CGGATCCTCTGTGACACGCAGTAAGACAGGGGTCGGCGCTGTCGGTATGT
GCTTCAAGCACGGTAACGGCGATCGCTGTCAGCACGTCGACGAAGTCGGT
AACATTTGTGTGTCCTCTATGGAGAGCAGCAAGACCGGAACTGGCACAGC
CGGCATGTGCATCAAGCATGGTGGCGGCGATCGCTGTCAGTACATTGACG
ATGGAGGCAACTCTTGTAAGGCATCATCTGCAACTAGTAAGGCCGGAACC
GGCGTTGTGGGTATGTGTAAGAGGCATGGTGGCGGTGATCGCTGTCGGCA
TGTTGACGAAGAAGGCAACTCTTGTGGGTCCTCTGCACAGACTAGCAAGA
CCGGAACTGGCGCAGCTAACATGTGCACCACACACGGTGGCGGCGATCGC
TGCCAGATCGACCATTGCTGCGCAGGAGATTCATTTGCATATGGAAGTCA
TCCTGAGGATGGGAGGGGCATGTGCACACACGCCATGCGCTGCCTCGTGC
GCGACCAGACCGACGAGGACGAGAGGAAGGCGTTGATGCGCCACTTCGGC
TTCAAGCAGGACCTGGTCATGAGAGGAGAGCACGCCTTCTACCACCGTGT
AGCGCAGCTGGTACCTGATGTGATCAGATGTGATGGAACCGGCATTCGCC
CATCACCTGGCCAAGGTGTTCACGACGCTGCTTGTTGA
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Coding sequence (CDS) from alignment at Contig_5:1431990..1433027-

>mRNA_2424 ID=mRNA_2424|Name=jgi.p|Trimin1|158339|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1038bp|location=Sequence derived from alignment at Contig_5:1431990..1433027- (Tribonema minus UTEX_B_3156 )
ATGCCTGCCAAGCTGTGTTCAATCGATGACTGCACAAAGCAAGCCGTAAA
GGGCGGTGACGCCACAGAGTTTTGTGTGAAGCATGGTGGCGGTGATCGCT
GCCAGTACATTGATGCAGAAGGCAACTCCTGTGGGTCCGCATCGAAGACT
GACAAGAAGACTGAAACTGGTGCTGTCGGCATGTGCATCAAGCACGGTGG
CGGCGATCGCTGTCAGCACGACGACGAAGGACACAAGCCTTGTGGCGCAT
CTGCTGTAACCAGTAAGACCGGGACCGGCGTCGTCGGCATGTGTGTTAAG
CACGGCGGCGACGATCGCTGCCAATATGTCGATGAAGAAATCAACGCTTG
CGGATCCTCTGTGACACGCAGTAAGACAGGGGTCGGCGCTGTCGGTATGT
GCTTCAAGCACGGTAACGGCGATCGCTGTCAGCACGTCGACGAAGTCGGT
AACATTTGTGTGTCCTCTATGGAGAGCAGCAAGACCGGAACTGGCACAGC
CGGCATGTGCATCAAGCATGGTGGCGGCGATCGCTGTCAGTACATTGACG
ATGGAGGCAACTCTTGTAAGGCATCATCTGCAACTAGTAAGGCCGGAACC
GGCGTTGTGGGTATGTGTAAGAGGCATGGTGGCGGTGATCGCTGTCGGCA
TGTTGACGAAGAAGGCAACTCTTGTGGGTCCTCTGCACAGACTAGCAAGA
CCGGAACTGGCGCAGCTAACATGTGCACCACACACGGTGGCGGCGATCGC
TGCCAGATCGACCATTGCTGCGCAGGAGATTCATTTGCATATGGAAGTCA
TCCTGAGGATGGGAGGGGCATGTGCACACACGCCATGCGCTGCCTCGTGC
GCGACCAGACCGACGAGGACGAGAGGAAGGCGTTGATGCGCCACTTCGGC
TTCAAGCAGGACCTGGTCATGAGAGGAGAGCACGCCTTCTACCACCGTGT
AGCGCAGCTGGTACCTGATGTGATCAGATGTGATGGAACCGGCATTCGCC
CATCACCTGGCCAAGGTGTTCACGACGCTGCTTGTTGA
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