mRNA_2463 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|152476
Unique NamemRNA_2463
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|152476 vs. uniprot
Match: A0A835Z0D7_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0D7_9STRA)

HSP 1 Score: 571 bits (1472), Expect = 7.640e-206
Identity = 288/288 (100.00%), Postives = 288/288 (100.00%), Query Frame = 1
Query:    1 DASFYQRLLFMTLMPLVPVIFLGCSWLWSTRRSKRLLETAGRAPALIAHVEALRRHWTLFLAWTLFIYGTVSSTVFQAFACDEIEEWSSHPYNWYLRADYSITCYDRRYWLYFAYAAVMVLVYPIGIPALYAHVLRCRRRADQRQHCDIPDAAADTGNTSESDFLMASSFLWDQYTDDAHWWELVECARRVLFTGFVVFVMPGTAGQAAVSMLLAFVAAVSFLAVQPHRQRIMHYQYFLGVVIVFLSSVNALLLKVEVSSDDGQSQVVIGALLKALSVVLVCAAVASS 864
            DASFYQRLLFMTLMPLVPVIFLGCSWLWSTRRSKRLLETAGRAPALIAHVEALRRHWTLFLAWTLFIYGTVSSTVFQAFACDEIEEWSSHPYNWYLRADYSITCYDRRYWLYFAYAAVMVLVYPIGIPALYAHVLRCRRRADQRQHCDIPDAAADTGNTSESDFLMASSFLWDQYTDDAHWWELVECARRVLFTGFVVFVMPGTAGQAAVSMLLAFVAAVSFLAVQPHRQRIMHYQYFLGVVIVFLSSVNALLLKVEVSSDDGQSQVVIGALLKALSVVLVCAAVASS
Sbjct:    1 DASFYQRLLFMTLMPLVPVIFLGCSWLWSTRRSKRLLETAGRAPALIAHVEALRRHWTLFLAWTLFIYGTVSSTVFQAFACDEIEEWSSHPYNWYLRADYSITCYDRRYWLYFAYAAVMVLVYPIGIPALYAHVLRCRRRADQRQHCDIPDAAADTGNTSESDFLMASSFLWDQYTDDAHWWELVECARRVLFTGFVVFVMPGTAGQAAVSMLLAFVAAVSFLAVQPHRQRIMHYQYFLGVVIVFLSSVNALLLKVEVSSDDGQSQVVIGALLKALSVVLVCAAVASS 288          
BLAST of jgi.p|Trimin1|152476 vs. uniprot
Match: A0A835YTR7_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTR7_9STRA)

HSP 1 Score: 439 bits (1128), Expect = 1.590e-153
Identity = 221/281 (78.65%), Postives = 245/281 (87.19%), Query Frame = 1
Query:    7 SFYQRLLFMTLMPLVPVIFLGCSWLWSTRRSKRLLETAGRAPALIAHVEALRRHWTLFLAWTLFIYGTVSSTVFQAFACDEIEEWSSHPYNWYLRADYSITCYDRRYWLYFAYAAVMVLVYPIGIPALYAHVLRCRRRADQ--RQHCDIPDAAADTGNTSESDFLMASSFLWDQYTDDAHWWELVECARRVLFTGFVVFVMPGTAGQAAVSMLLAFVAAVSFLAVQPHRQRIMHYQYFLGVVIVFLSSVNALLLKVEVSSDDGQSQVVIGALLKALSVVLV 843
            SFY+RLLFMTLMPLVPVIFLGCSWLWS RR  RL ETA RAPAL AH ++LRRHWTLFLAWT FIYGTVSSTVFQ FACD+IEEWSS PYNWYLRADYSITCYD+ YW  FAYAAVMVLVYPIGIPALYA+VL  +R ADQ  R + D+    A+TG+  ES F++ASSFLWDQYTD+A+WWELVECARRVLFTGF+VF+MPGTAGQAAVS+LL FVA VSFLAVQP+RQR  HYQYFLG +IVFLSS NALLLKV+ SSD+GQSQV+IGALL  LSVVL+
Sbjct:    1 SFYERLLFMTLMPLVPVIFLGCSWLWSMRRVHRLQETADRAPALAAHAKSLRRHWTLFLAWTFFIYGTVSSTVFQTFACDKIEEWSSRPYNWYLRADYSITCYDQLYWCNFAYAAVMVLVYPIGIPALYAYVLHRKRCADQLERHNSDMSARGANTGSNGESSFIVASSFLWDQYTDEAYWWELVECARRVLFTGFLVFIMPGTAGQAAVSVLLTFVAVVSFLAVQPYRQRARHYQYFLGALIVFLSSFNALLLKVDASSDNGQSQVIIGALLIVLSVVLI 281          
BLAST of jgi.p|Trimin1|152476 vs. uniprot
Match: A0A835ZAX5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAX5_9STRA)

HSP 1 Score: 440 bits (1132), Expect = 2.460e-151
Identity = 222/283 (78.45%), Postives = 245/283 (86.57%), Query Frame = 1
Query:    1 DASFYQRLLFMTLMPLVPVIFLGCSWLWSTRRSKRLLETAGRAPALIAHVEALRRHWTLFLAWTLFIYGTVSSTVFQAFACDEIEEWSSHPYNWYLRADYSITCYDRRYWLYFAYAAVMVLVYPIGIPALYAHVLRCRRRADQ--RQHCDIPDAAADTGNTSESDFLMASSFLWDQYTDDAHWWELVECARRVLFTGFVVFVMPGTAGQAAVSMLLAFVAAVSFLAVQPHRQRIMHYQYFLGVVIVFLSSVNALLLKVEVSSDDGQSQVVIGALLKALSVVLV 843
            DASFY+RLLFMTLMPLVPVIFLGCSWLWS RR  RL ETA RAPAL AH E+LRRHWTLFLAWT FIY TVSSTVFQ FACD+IEEWSS PYNWYLRADYSITCYD+ YW  FAY AVMVLVYPIGIPALYA+VL  +R ADQ  RQ+ D+    A+TG+  ES F++ASSFLWDQYTD+A+WWE VECARRVLFTGF+VF+MPGTAGQAAVS+LL FVA VSFLAVQP+RQR  HYQYFLG +IVFLSS NALLLKV+ SSD+GQSQV+IGALL  LSVVL+
Sbjct:  142 DASFYERLLFMTLMPLVPVIFLGCSWLWSMRRVHRLQETADRAPALAAHAESLRRHWTLFLAWTFFIYSTVSSTVFQTFACDKIEEWSSRPYNWYLRADYSITCYDQLYWCNFAYTAVMVLVYPIGIPALYAYVLHRKRCADQLERQYSDMSARGANTGSNGESSFIVASSFLWDQYTDEAYWWEPVECARRVLFTGFLVFIMPGTAGQAAVSVLLTFVAVVSFLAVQPYRQRARHYQYFLGALIVFLSSFNALLLKVDASSDNGQSQVIIGALLIVLSVVLI 424          
BLAST of jgi.p|Trimin1|152476 vs. uniprot
Match: A0A836CDE4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDE4_9STRA)

HSP 1 Score: 414 bits (1064), Expect = 2.140e-143
Identity = 210/254 (82.68%), Postives = 227/254 (89.37%), Query Frame = 1
Query:  106 LLETAGRAPALIAHVEALRRHWTLFLAWTLFIYGTVSSTVFQAFACDEIEEWSSHPYNWYLRADYSITCYDRRYWLYFAYAAVMVLVYPIGIPALYAHVLRCRRRADQRQHCDIPDAAADTGNTSESDFLMASSFLWDQYTDDAHWWELVECARRVLFTGFVVFVMPGTAGQAAVSMLLAFVAAVSFLAVQPHRQRIMHYQYFLGVVIVFLSSVNALLLKVEVSSDDG-QSQVVIGALLKALSVVLVCAAVASS 864
            L +T GRAPAL AH EALRRH TLFLAWT FIYGT SSTVFQ+FACD+IEEWSSHPYNWYLR DYSITCYDRRYW YF YAA+MVLVY IGIP LYA+VL C+RRADQR H DIPDAAADTGNTSES+FLMASSFLWD YTD+A+WWEL+EC RRVLFTGF+VFVMPG AGQAAVS+LLAFVAA SFLAVQP+RQR MHYQYFLG +IVF SS NALLLKV+VSSDDG QSQVVIGALL ALS+VL+ AAV SS
Sbjct:    4 LQKTTGRAPALAAHAEALRRHRTLFLAWTFFIYGTASSTVFQSFACDKIEEWSSHPYNWYLRVDYSITCYDRRYWFYFTYAALMVLVYSIGIPTLYAYVLHCKRRADQRHHDDIPDAAADTGNTSESNFLMASSFLWDHYTDEAYWWELLECTRRVLFTGFLVFVMPGAAGQAAVSVLLAFVAAASFLAVQPYRQRGMHYQYFLGALIVFFSSFNALLLKVDVSSDDGGQSQVVIGALLIALSIVLIGAAVVSS 257          
BLAST of jgi.p|Trimin1|152476 vs. uniprot
Match: A0A835Z836_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z836_9STRA)

HSP 1 Score: 282 bits (722), Expect = 1.760e-90
Identity = 151/289 (52.25%), Postives = 199/289 (68.86%), Query Frame = 1
Query:    1 DASFYQRLLFMTLMPLVPVIFLGCSWLWSTRRSKRLLETAGRAPALIAHVEALRRHWTLFLAWTLFIYGTVSSTVFQAFACDEIEEWSSHPYNWYLRADYSITCYDR-RYWLYFAYAAVMVLVYPIGIPALYAHVLRCRRRADQRQHCDIPDAAADTGNTSESDFLMASSFLWDQYTDDAHWWELVECARRVLFTGFVVFVMPGTAGQAAVSMLLAFVAAVSFLAVQPHRQRIMHYQYFLGVVIVFLSSVNALLLKVEVSSDDGQSQVVIGALLKALSVVLVCAAVASS 864
            +A+FY++LL MTL PLV V  LGCSWLW+  R  RL   AG   A  A ++ALR+HWT FLA T  +YGTVSS +FQ FACD ++E  ++    YLRADYSI CY+   YW YFAYA  M +VYP+G+PALYA +L  +RR  Q +   +  A +  G     D + ASSFLW QY   A WWE+VECARRV+ TG +VF++PG+AGQAAVS+L AF+  + F+AV+PHR+  M  QY LG VIV+ +S+NALL+K +VS    QSQ+V+G ++  +S  L+ AAVA +
Sbjct:   62 NATFYEKLLAMTLGPLVAVALLGCSWLWAVAREHRLRRVAGADAARAARLKALRKHWTAFLALTFLVYGTVSSIIFQTFACDYMQELDTY----YLRADYSIQCYNNSEYWRYFAYAMTMFVVYPLGVPALYALLLCFKRRQHQARQGAVAAAPSVQGLEPHWDLVHASSFLWAQYKPKAEWWEMVECARRVVLTGVLVFILPGSAGQAAVSVLFAFLLTLIFMAVRPHREHAMQRQYLLGAVIVYFASMNALLIKSQVSG--AQSQLVVGIVMIIISTALIVAAVAQT 344          
BLAST of jgi.p|Trimin1|152476 vs. uniprot
Match: A0A835ZA22_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA22_9STRA)

HSP 1 Score: 272 bits (696), Expect = 4.570e-87
Identity = 144/263 (54.75%), Postives = 183/263 (69.58%), Query Frame = 1
Query:    1 DASFYQRLLFMTLMPLVPVIFLGCSWLWSTRRSKRLLETAGRAPALIAHVEALRRHWTLFLAWTLFIYGTVSSTVFQAFACDEIEEWSSHPYNWYLRADYSITCYDR-RYWLYFAYAAVMVLVYPIGIPALYAHVLRCRRRADQRQHCDIPDAAADTGNTSESDFLMASSFLWDQYTDDAHWWELVECARRVLFTGFVVFVMPGTAGQAAVSMLLAFVAAVSFLAVQPHRQRIMHYQYFLGVVIVFLSSVNALLLKVEVSSDD 786
            +A+FY++LL MTL PLV V  LGCSWLW+  R  R+   AG   A    ++ALR+HWT FLA T  +YGTVSST+FQ FACD ++E  ++    YLRADYSI CY+   YW YFAYA  M +VYP+G+PALYA +L C RR  Q Q      AAA     S  D + ASSFLW QY  +A WWE+VECARRV+ TG +VF++PG+AGQAAVS+L AF  A+ F+AV+P+R+  M  QY LG VIV+ +S+NALL+K +VS D 
Sbjct:   49 NATFYEQLLVMTLGPLVAVALLGCSWLWALVREHRVQRVAGADAARAVRLKALRKHWTAFLALTFLVYGTVSSTIFQTFACDYVQELDTY----YLRADYSIQCYNNLEYWRYFAYAMTMFVVYPLGVPALYA-LLLCSRRRQQHQAQQGLVAAAPN---SHWDLVHASSFLWAQYKPEAEWWEIVECARRVVLTGVLVFILPGSAGQAAVSVLFAFFLALMFMAVRPYREHTMQRQYLLGAVIVYFASMNALLIKSQVSDDQ 303          
BLAST of jgi.p|Trimin1|152476 vs. uniprot
Match: A0A835ZGE0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGE0_9STRA)

HSP 1 Score: 268 bits (686), Expect = 3.460e-79
Identity = 155/325 (47.69%), Postives = 192/325 (59.08%), Query Frame = 1
Query:    4 ASFYQRLLFMTLMPLVPVIFLGCSWLWSTRRSKRLLETAGRAPALI--AHVEALRRHWTLFLAWTLFIYGTVSSTVFQAFACDEIEEWSSHPYNWYLRADYSITCYDRRYWLYFAYAAVMVLVYPIGIPALYAHVLRCRRRADQRQHCDIPDAAADT-------------------------------------GNTSESDF---LMASSFLWDQYTDDAHWWELVECARRVLFTGFVVFVMPGTAGQAAVSMLLAFVAAVSFLAVQPHRQRIMHYQYFLGVVIVFLSSVNALLLKVEVSSDDGQSQVVIGALLKALSVVLVCAA 852
            A+FYQ+LL +TL PL+PV  LGCSWLWS  R                 AH  ALR+HWT  LA+T  +YGT SS +FQ FAC  +EE        YLRADYSI CYDRRYW YFAYA  M+LVYP+G+PAL A +L  +RR ++        A A+                                      G+  E ++   + ASSF+W  YT+ A WWELVECARRVL TG +VF+ PGT GQAAVSML+AFVA ++F+AV+PHR   MH QY LG +IV+ +S NALLL + +S    QSQ V+G LL  LSVVL+ AA
Sbjct:  696 ANFYQKLLVVTLAPLLPVALLGCSWLWSLSRXXXXXXXXXXXXXXXXXAHARALRKHWTALLAFTFLVYGTTSSYIFQTFACASVEELDES----YLRADYSIRCYDRRYWPYFAYAMAMILVYPVGVPALNAVLLYRKRRLNKEAELQAAFARANAAAARRAPAAKMPSQTSQVALPSSHATVSQLELERSNGGSEREQEYSGLVGASSFIWAPYTNAAEWWELVECARRVLLTGILVFIAPGTPGQAAVSMLMAFVALLAFMAVRPHRDHAMHQQYLLGALIVYFASTNALLLDLNIS-QSAQSQTVVGILLVVLSVVLIVAA 1015          
BLAST of jgi.p|Trimin1|152476 vs. uniprot
Match: A0A835ZPJ6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZPJ6_9STRA)

HSP 1 Score: 247 bits (631), Expect = 2.610e-77
Identity = 136/288 (47.22%), Postives = 190/288 (65.97%), Query Frame = 1
Query:    1 DASFYQRLLFMTLMPLVPVIFLGCSWLWSTRRSKRLLETAGRAPALIAHVEALRRHWTLFLAWTLFIYGTVSSTVFQAFACDEIEEWSSHPYNWYLRADYSITCYDRRYWLYFAYAAVMVLVYPIGIPALYAHVLRCRRRADQ-RQHCDIPDAAADTGNTSESDFLM-ASSFLWDQYTDDAHWWELVECARRVLFTGFVVFVMPGTAGQAAVSMLLAFVAAVSFLAVQPHRQRIMHYQYFLGVVIVFLSSVNALLLKVEVS-SDDGQSQVVIGALLKALSVVLVCAAV 855
            D  FY +LL  TL PL+ +  +GCSWL +    +R    AG   A +A ++ALRRHWTLFL      +G+VSS VF+ FAC+  EE       WYLRADYSI C+   YW Y AYA   +LVYPIGIPAL+A ++  +R+  + + +  +P     TG+ S SD L  AS FLW+QY   A +W++ ECARR+L TGF+ F++PG AGQAA+SMLL+F   ++F+  +PHR+R +H+QY LG VI++LS+  ALL+ + +  S++  S+ V+G LL AL+V L+ AAV
Sbjct:   43 DLDFYDKLLATTLAPLMYIALVGCSWLAAQHCVRRARLDAGETAAQLADLDALRRHWTLFLGILFLNFGSVSSVVFRTFACEHFEELGE----WYLRADYSIQCFANGYWWYAAYAFCAMLVYPIGIPALFAVLVWQKRKLRRCKANLLVPATQDSTGSPSRSDRLFEASGFLWEQYKTQAEYWKVFECARRLLLTGFIAFLLPGEAGQAAISMLLSFTLLLAFMIARPHRERQVHWQYLLGAVIIYLSTAAALLISLRLDYSNEPSSRRVVGWLLVALNVALITAAV 326          
BLAST of jgi.p|Trimin1|152476 vs. uniprot
Match: A0A835YJS2_9STRA (TRP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJS2_9STRA)

HSP 1 Score: 248 bits (632), Expect = 1.650e-76
Identity = 130/287 (45.30%), Postives = 189/287 (65.85%), Query Frame = 1
Query:    1 DASFYQRLLFMTLMPLVPVIFLGCSWLWSTRRSKRLLETAGRAPALIAHVEALRRHWTLFLAWTLFIYGTVSSTVFQAFACDEIEEWSSHPYNWYLRADYSITCYDRRYWLYFAYAAVMVLVYPIGIPALYAHVL--RCRRRADQRQHCDIPDAAADTGNTSESDFLMASSFLWDQYTDDAHWWELVECARRVLFTGFVVFVMPGTAGQAAVSMLLAFVAAVSFLAVQPHRQRIMHYQYFLGVVIVFLSSVNALLLKVEVSSDDGQSQVVIGALLKALSVVLVCAAV 855
            + +FYQ+LL MTL PL  V+ LG SWL +  R+++L  + G   A + H EALRRHWT FLA+T  ++G VSS VF  F C+E++         YLRADYS+ CY   YW Y  YAAVM+ VYPIGI ALY+ +L  + + + + + +  I   A+       S  + AS FLW+QYT++  WWE+ EC RR+L TGFV F++PGT  QA V ML+AF + +++L V+PHR R  ++QY  G +I++LS+++ALL K++++ +  QSQ ++G +L  LSV ++ AAV
Sbjct:   90 ELNFYQKLLAMTLAPLAVVVLLGASWLLACWRAQQLQRSDGFEAAYLMHQEALRRHWTAFLAFTFLVFGVVSSVVFLTFVCEELD---------YLRADYSVQCYTSEYWAYAVYAAVMLFVYPIGITALYSVLLWRKSKLKMNNKGNSKIVRVAS---LAPRSRLVEASGFLWEQYTEETPWWEIAECVRRLLITGFVAFILPGTVSQAVVGMLMAFASLMAYLMVRPHRDRRTYWQYITGALILYLSTMSALLQKLDIAKEP-QSQAIVGIVLIVLSVAMIAAAV 363          
BLAST of jgi.p|Trimin1|152476 vs. uniprot
Match: A0A836CEM9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEM9_9STRA)

HSP 1 Score: 254 bits (649), Expect = 3.080e-76
Identity = 151/341 (44.28%), Postives = 198/341 (58.06%), Query Frame = 1
Query:    1 DASFYQRLLFMTLMPLVPVIFLGCSWLWSTRRSKRLLETAGRAPALIAHVEALRRHWTLFLAWTLFIYGTVSSTVFQAFACDEIEEWSSHPYNWYLRADYSITCYDRRYWLYFAYAAVMVLVYPIGIPALYAHVLRCRRRADQRQHCDIP-DAAADTGNTSES--------------------------------------------------------DFLMASSFLWDQYTDDAHWWELVECARRVLFTGFVVFVMPGTAGQAAVSMLLAFVAAVSFLAVQPHRQRIMHYQYFLGVVIVFLSSVNALLLKVEVSSDDGQSQVVIGALLKALSVVLVCAA 852
            DASFY RLLFMTL PLVP+ FLGCSWL++  R  +L      A A  A  +ALRRHWT FLAWT  I+GTVSST+FQAFACDE+ E       W LRADY++ CY   YW YF YA  M++VYPIGI ALYA++L  +R++D++     P +AA    +TS S                                                          + ASSF+WDQY   A  WELVECARR++ TGF+VF+ P +AGQAA S + AF   + +   +PH  R + +QY LG +IV+ +S++ALLLKV+ S+D+G SQ+V+G +L  L+V L+ AA
Sbjct:  200 DASFYTRLLFMTLAPLVPIAFLGCSWLFACARVGQLRRANAHAAAQCARSDALRRHWTAFLAWTFLIFGTVSSTIFQAFACDELPELGQ----WRLRADYAVQCYVDGYWGYFGYAMAMLVVYPIGITALYAYLLYLKRQSDRKLDVLAPVEAATGLRSTSNSAQPAGAAIAMYAGAQPNSATDLSVRSIQGSAAAQLSLRSATALGERQSAAVSQSPPGIVGASSFVWDQYHSKAQAWELVECARRLMLTGFLVFIHPQSAGQAAASTVFAFGFLLLYALYKPHHDRTLGHQYILGALIVYFASLSALLLKVDASADEG-SQLVMGIVLVMLTVALIGAA 535          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|152476 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z0D7_9STRA7.640e-206100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835YTR7_9STRA1.590e-15378.65Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835ZAX5_9STRA2.460e-15178.45Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CDE4_9STRA2.140e-14382.68Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z836_9STRA1.760e-9052.25Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZA22_9STRA4.570e-8754.75Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZGE0_9STRA3.460e-7947.69Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZPJ6_9STRA2.610e-7747.22Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835YJS2_9STRA1.650e-7645.30TRP domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A836CEM9_9STRA3.080e-7644.28Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_5contigContig_5:1772605..1773899 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|152476|gw1.5.300.1
Max annot lvl2759|Eukaryota
EggNOG OGs2BFIX@1|root,2S176@2759|Eukaryota
Evalue1.24e-36
Seed ortholog2880.D8LRF9
Hectar predicted targeting categorysignal anchor
TranscriptId152798
TrackFilteredModels1
ProteinId152476
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|152476gene_2463Tribonema minus UTEX_B_3156 geneContig_5 1772605..1773899 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|152476Trimin1|152476|gw1.5.300.1Tribonema minus UTEX_B_3156 polypeptideContig_5 1772605..1773899 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_2463_2exon_2463_2Tribonema minus UTEX_B_3156 exonContig_5 1772605..1772874 -
exon_2463_1exon_2463_1Tribonema minus UTEX_B_3156 exonContig_5 1773306..1773899 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_2463CDS_2463Tribonema minus UTEX_B_3156 CDSContig_5 1773306..1773899 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_2463 ID=mRNA_2463|Name=jgi.p|Trimin1|152476|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=864bp|location=Sequence derived from alignment at Contig_5:1772605..1773899- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GATGCCAGCTTCTACCAGAGGCTGCTCTTTATGACCCTGATGCCGCTGGT
ACCCGTCATATTTCTGGGGTGCTCATGGCTGTGGTCAACGAGGCGATCGA
AGCGGCTGCTAGAAACTGCCGGCAGAGCGCCGGCACTTATTGCGCATGTA
GAGGCCCTGCGACGGCATTGGACTCTCTTTCTCGCCTGGACACTCTTCAT
CTATGGCACCGTCAGTAGCACCGTGTTTCAAGCTTTTGCATGTGACGAAA
TTGAGGAGTGGTCATCCCACCCGTACAACTGGTACCTGAGGGCTGATTAC
TCCATCACGTGCTACGATCGGCGCTACTGGCTCTACTTCGCTTATGCGGC
GGTGATGGTACTTGTGTACCCCATTGGCATCCCTGCCCTTTACGCACATG
TGCTACGTTGCAGGCGTCGCGCGGATCAGAGACAGCACTGCGACATTCCA
GATGCTGCAGCAGACACAGGCAACACCAGCGAGTCCGATTTTCTCATGGC
TTCCTCCTTTCTTTGGGACCAGTACACGGACGACGCGCACTGGTGGGAGC
TTGTCGAATGCGCACGGCGCGTTCTCTTCACCGGCTTTGTGGTGTTCGTC
ATGCCAGGAACAGCTGGCCAGGCGGCCGTCTCCATGCTCCTGGCATTCGT
TGCAGCTGTGTCATTTCTGGCTGTGCAGCCACACCGGCAGCGGATCATGC
ACTACCAGTACTTCCTGGGTGTGGTCATAGTCTTCTTGTCGAGCGTCAAT
GCTCTGCTGTTGAAGGTTGAAGTATCATCTGACGACGGACAGTCGCAGGT
CGTAATTGGAGCTCTGCTCAAAGCGCTTAGTGTTGTGCTGGTTTGTGCTG
CTGTGGCCAGCAGC
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protein sequence of jgi.p|Trimin1|152476

>Trimin1|152476|gw1.5.300.1 ID=Trimin1|152476|gw1.5.300.1|Name=jgi.p|Trimin1|152476|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=288bp
DASFYQRLLFMTLMPLVPVIFLGCSWLWSTRRSKRLLETAGRAPALIAHV
EALRRHWTLFLAWTLFIYGTVSSTVFQAFACDEIEEWSSHPYNWYLRADY
SITCYDRRYWLYFAYAAVMVLVYPIGIPALYAHVLRCRRRADQRQHCDIP
DAAADTGNTSESDFLMASSFLWDQYTDDAHWWELVECARRVLFTGFVVFV
MPGTAGQAAVSMLLAFVAAVSFLAVQPHRQRIMHYQYFLGVVIVFLSSVN
ALLLKVEVSSDDGQSQVVIGALLKALSVVLVCAAVASS
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mRNA from alignment at Contig_5:1772605..1773899-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2463 ID=mRNA_2463|Name=jgi.p|Trimin1|152476|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1295bp|location=Sequence derived from alignment at Contig_5:1772605..1773899- (Tribonema minus UTEX_B_3156 )
GATGCCAGCTTCTACCAGAGGCTGCTCTTTATGACCCTGATGCCGCTGGT ACCCGTCATATTTCTGGGGTGCTCATGGCTGTGGTCAACGAGGCGATCGA AGCGGCTGCTAGAAACTGCCGGCAGAGCGCCGGCACTTATTGCGCATGTA GAGGCCCTGCGACGGCATTGGACTCTCTTTCTCGCCTGGACACTCTTCAT CTATGGCACCGTCAGTAGCACCGTGTTTCAAGCTTTTGCATGTGACGAAA TTGAGGAGTGGTCATCCCACCCGTACAACTGGTACCTGAGGGCTGATTAC TCCATCACGTGCTACGATCGGCGCTACTGGCTCTACTTCGCTTATGCGGC GGTGATGGTACTTGTGTACCCCATTGGCATCCCTGCCCTTTACGCACATG TGCTACGTTGCAGGCGTCGCGCGGATCAGAGACAGCACTGCGACATTCCA GATGCTGCAGCAGACACAGGCAACACCAGCGAGTCCGATTTTCTCATGGC TTCCTCCTTTCTTTGGGACCAGTACACGGACGACGCGCACTGGTGGGAGC TTGTCGAATGCGCACGGCGCGTTCTCTTCACCGGCTTTGTGGTGGTAAGT TTGGTATCATACTGACAGTGTGTGCATGGTGAAACGCTGATAATCGTGTT GAATCGTAGACTAGCTGCATGCAACCGAAAGGCATGGTACATGTATTTGT CGTGGTGGCTTCTATGTTGCTCATTAGCTCACTCGCCATTGTTGCATGGT CGTCCCTTGTCTTGCATGGTATGTTTTACGCGCCACCGACCCTTGGCATG AGACATTGAATTGATATTTTCTCATGCATCTGAATGGTGGCCTTGGCTGT GTATGGGCCAGGAGGCTCCCACAGGTAGACGGGTCATCAAGTTGATCCTA CTGTACTGGACTACATTCAGCTGGCCTTGCTTGCTGACATGTGGTATGGT GCACTTGATGTACGCTATTTTCAGCATGTACATCATTGAACGGCTCTGTT GCTGCGCTCCCTGTCTGTGCCTCAGTTCGTCATGCCAGGAACAGCTGGCC AGGCGGCCGTCTCCATGCTCCTGGCATTCGTTGCAGCTGTGTCATTTCTG GCTGTGCAGCCACACCGGCAGCGGATCATGCACTACCAGTACTTCCTGGG TGTGGTCATAGTCTTCTTGTCGAGCGTCAATGCTCTGCTGTTGAAGGTTG AAGTATCATCTGACGACGGACAGTCGCAGGTCGTAATTGGAGCTCTGCTC AAAGCGCTTAGTGTTGTGCTGGTTTGTGCTGCTGTGGCCAGCAGC
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Coding sequence (CDS) from alignment at Contig_5:1772605..1773899-

>mRNA_2463 ID=mRNA_2463|Name=jgi.p|Trimin1|152476|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=864bp|location=Sequence derived from alignment at Contig_5:1772605..1773899- (Tribonema minus UTEX_B_3156 )
GATGCCAGCTTCTACCAGAGGCTGCTCTTTATGACCCTGATGCCGCTGGT
ACCCGTCATATTTCTGGGGTGCTCATGGCTGTGGTCAACGAGGCGATCGA
AGCGGCTGCTAGAAACTGCCGGCAGAGCGCCGGCACTTATTGCGCATGTA
GAGGCCCTGCGACGGCATTGGACTCTCTTTCTCGCCTGGACACTCTTCAT
CTATGGCACCGTCAGTAGCACCGTGTTTCAAGCTTTTGCATGTGACGAAA
TTGAGGAGTGGTCATCCCACCCGTACAACTGGTACCTGAGGGCTGATTAC
TCCATCACGTGCTACGATCGGCGCTACTGGCTCTACTTCGCTTATGCGGC
GGTGATGGTACTTGTGTACCCCATTGGCATCCCTGCCCTTTACGCACATG
TGCTACGTTGCAGGCGTCGCGCGGATCAGAGACAGCACTGCGACATTCCA
GATGCTGCAGCAGACACAGGCAACACCAGCGAGTCCGATTTTCTCATGGC
TTCCTCCTTTCTTTGGGACCAGTACACGGACGACGCGCACTGGTGGGAGC
TTGTCGAATGCGCACGGCGCGTTCTCTTCACCGGCTTTGTGGTGTTCGTC
ATGCCAGGAACAGCTGGCCAGGCGGCCGTCTCCATGCTCCTGGCATTCGT
TGCAGCTGTGTCATTTCTGGCTGTGCAGCCACACCGGCAGCGGATCATGC
ACTACCAGTACTTCCTGGGTGTGGTCATAGTCTTCTTGTCGAGCGTCAAT
GCTCTGCTGTTGAAGGTTGAAGTATCATCTGACGACGGACAGTCGCAGGT
CGTAATTGGAGCTCTGCTCAAAGCGCTTAGTGTTGTGCTGGTTTGTGCTG
CTGTGGCCAGCAGC
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