mRNA_2363 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|140995
Unique NamemRNA_2363
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|140995 vs. uniprot
Match: A0A835YSD6_9STRA (GIY-YIG domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSD6_9STRA)

HSP 1 Score: 359 bits (921), Expect = 7.680e-126
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 1
Query:    1 VYTLKLRGGKFYVGFTKNLPKRLEQHFTGTDSAMWTKYYPMERVIDIEYNGNKFMEGTKVLMLMALHGIDNVRGGAFVTARFTPDERQAIEKQLWGATDACLKCGDPTHFAVDCTSYNKRARMDTTYEDLPPVDEGLFAARRELLRSPHVVCTRCGRGKHNAAVCFAK 504
            VYTLKLRGGKFYVGFTKNLPKRLEQHFTGTDSAMWTKYYPMERVIDIEYNGNKFMEGTKVLMLMALHGIDNVRGGAFVTARFTPDERQAIEKQLWGATDACLKCGDPTHFAVDCTSYNKRARMDTTYEDLPPVDEGLFAARRELLRSPHVVCTRCGRGKHNAAVCFAK
Sbjct:    1 VYTLKLRGGKFYVGFTKNLPKRLEQHFTGTDSAMWTKYYPMERVIDIEYNGNKFMEGTKVLMLMALHGIDNVRGGAFVTARFTPDERQAIEKQLWGATDACLKCGDPTHFAVDCTSYNKRARMDTTYEDLPPVDEGLFAARRELLRSPHVVCTRCGRGKHNAAVCFAK 168          
BLAST of jgi.p|Trimin1|140995 vs. uniprot
Match: A0A835YZI4_9STRA (CCHC-type domain-containing protein (Fragment) n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZI4_9STRA)

HSP 1 Score: 217 bits (552), Expect = 2.310e-70
Identity = 95/114 (83.33%), Postives = 107/114 (93.86%), Query Frame = 1
Query:    1 VYTLKLRGGKFYVGFTKNLPKRLEQHFTGTDSAMWTKYYPMERVIDIEYNGNKFMEGTKVLMLMALHGIDNVRGGAFVTARFTPDERQAIEKQLWGATDACLKCGDPTHFAVDC 342
            VYTLKLRGGK+YVGFT NLPKRLEQHFTGTD AMWTK+YPMERV++IEYNGNKF E T  LMLMA+HG++NVRGG+++TARFTP+ER+AIEKQLWGATDACLKCGDPTHFA DC
Sbjct:    2 VYTLKLRGGKYYVGFTTNLPKRLEQHFTGTDGAMWTKHYPMERVVNIEYNGNKFKEATATLMLMAIHGLNNVRGGSYITARFTPEERRAIEKQLWGATDACLKCGDPTHFAADC 115          
BLAST of jgi.p|Trimin1|140995 vs. uniprot
Match: A0A6C0E0W1_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0E0W1_9ZZZZ)

HSP 1 Score: 99.8 bits (247), Expect = 3.460e-23
Identity = 60/178 (33.71%), Postives = 81/178 (45.51%), Query Frame = 1
Query:    1 VYTLKLRGGKFYVGFTKNLPKRLEQHFTGTDSAMWTKYYPMERVIDIEYNGNKFMEGTKVLMLMALHGIDNVRGGAFVTARFTPDERQAIEKQLWGATDACLKCGDPTHFAVDCTSYNKRARMDTTYEDLPPVDEGLFAARRELLRSPH-----------VVCTRCGRGKHNAAVCFA 501
            +Y L+L  GK+YVG T N   RL+ HF    SA WTK Y   ++I++  N + + E     M M  +GIDNVRGG+FV+          + +   G  D C KCG   HFA DC    +       Y D   +DE          +  +           V+C RCGR  H A  C+A
Sbjct:    4 IYILQLEQGKYYVGKTINPSFRLDSHFNSNGSA-WTKLYKPIKMIELIPNCDDYDEDKYTRMFMDKYGIDNVRGGSFVSVELEQSTINHLTQMKNGTNDKCFKCGTSGHFAKDCKKIKEEIVWCCEYCDKEFIDENKCEYHERNCKYNNEDSESEDECDDVICFRCGREGHYANSCYA 180          
BLAST of jgi.p|Trimin1|140995 vs. uniprot
Match: A0A6C0DJP0_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0DJP0_9ZZZZ)

HSP 1 Score: 95.1 bits (235), Expect = 2.500e-21
Identity = 58/179 (32.40%), Postives = 87/179 (48.60%), Query Frame = 1
Query:    1 VYTLKLRGGKFYVGFTKNLPKRLEQHFTGTDSAMWTKYYPMERVIDIEYNGNKFMEGTKVLMLMALHGIDNVRGGAFVTARFTPDERQAIEKQLWGATDACLKCGDPTHFAVDC---TSYNKRARMDTTYEDLPPV--DEGLFAA------RRELLRSPHVVCTRCGRGKHNAAVCFAK 504
            +Y LKL+GGK+YVG + ++  R +QH  G  S+ WTK Y    +++     +  ME       M  +GI+NVRGGA+VT      +   ++K+LW A+D C +CG   H+A  C   T  N  +      E+      DE    A      RR     P   C  CG+  H A+ C+++
Sbjct:    6 IYVLKLQGGKYYVGKSSDVIGRFQQHMNGQGSS-WTKKYKPMSLVESRDGVSPLMEDMITKEYMVKYGIENVRGGAYVTEELDEVQEYNLQKELWAASDCCTECGRKGHWAKTCRATTDVNGNSLCSWECENCSKEFDDEKECEAHERMCGRRVNTIQPGNKCYSCGKYGHYASSCYSR 183          
BLAST of jgi.p|Trimin1|140995 vs. uniprot
Match: A0A3G5A8D2_9VIRU (GIY-YIG nuclease n=1 Tax=Hyperionvirus sp. TaxID=2487770 RepID=A0A3G5A8D2_9VIRU)

HSP 1 Score: 94.7 bits (234), Expect = 5.400e-21
Identity = 49/116 (42.24%), Postives = 65/116 (56.03%), Query Frame = 1
Query:    1 VYTLKLRGGKFYVGFTKNLPKRLEQHFTGTDSAMWTKYYPMERVIDIEYNGNKFMEGTKVLMLMALHGIDNVRGGAFVTARFTPDERQAIEKQLWGATDACLKCGDPTHFAVDCTS 348
            +Y LKL  GK+YVG T    KR+E+H     S  WT+ Y    V+DI  N + F E    L LM+  GI+NVRGG+FV+     ++ Q+I   L  A + C KCG   HFA DC +
Sbjct:    3 IYLLKLEAGKYYVGRTNKEEKRIEEHIELFGSE-WTRKYKYVEVMDIIKNADSFDEDKYTLKLMSEFGIENVRGGSFVSVTLNDEQIQSISLMLRNAENKCFKCGGIGHFAADCVN 117          
BLAST of jgi.p|Trimin1|140995 vs. uniprot
Match: A0A6C0LNL3_9ZZZZ (GIY-YIG domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0LNL3_9ZZZZ)

HSP 1 Score: 93.6 bits (231), Expect = 9.830e-21
Identity = 45/114 (39.47%), Postives = 68/114 (59.65%), Query Frame = 1
Query:    1 VYTLKLRGGKFYVGFTKNLPKRLEQHFTGTDSAMWTKYYPMERVIDIEYNGNKFMEGTKVLMLMALHGIDNVRGGAFVTARFTPDERQAIEKQLWGATDACLKCGDPTHFAVDC 342
            +Y LKLR GK+Y+G TKN+ KR E+H TGT S  WTK +    +I    + ++F E   V   MA +GI+NVRGG++       +    +EK++  + + C++CG  TH+  DC
Sbjct:    4 IYILKLRAGKYYIGKTKNIEKRYEEHLTGTGSG-WTKKHKPVSLIKTIKSTSQFDEDKYVKEYMAKYGIENVRGGSYSNIVLDENSIAVLEKEIRHSNNVCMRCGRDTHYIKDC 116          
BLAST of jgi.p|Trimin1|140995 vs. uniprot
Match: A0A6C0JPV8_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0JPV8_9ZZZZ)

HSP 1 Score: 93.2 bits (230), Expect = 1.120e-20
Identity = 55/176 (31.25%), Postives = 86/176 (48.86%), Query Frame = 1
Query:    1 VYTLKLRGGKFYVGFTKNLPKRLEQHFTGTDSAMWTKYYPMERVIDIEYNGNKFMEGTKVLMLMALHGIDNVRGGAFVTARFTPDERQAIEKQLWGATDACLKCGDPTHFAVDCTSYNKRARMDTTYEDLPPVDE------GLFAARRELLRSPHVV---CTRCGRGKHNAAVCFA 501
            +Y L+L+GG++YVG T ++ +R +QH  G  SA WTK Y    +     N + F E   V   M ++GI NVRGG++V+ + T ++  A++ ++  ATD C +CG   HFA +C +  +         +    D       G     +        V   C RCGR  H +  C+A
Sbjct:    5 IYILRLQGGRYYVGKTDDVDRRYQQHMKGYGSA-WTKKYSPICIAKQIPNASPFDEDRYVKEYMDIYGIQNVRGGSYVSIKLTEEQENALKLEIRAATDKCTRCGRDGHFAKNCYATTELVESFDEEWECDYCDRTFTTKFGCGVHEKSCKEKNSRVSGKCYRCGREGHYSPECYA 179          
BLAST of jgi.p|Trimin1|140995 vs. uniprot
Match: A0A6C0E9U8_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0E9U8_9ZZZZ)

HSP 1 Score: 92.4 bits (228), Expect = 1.840e-20
Identity = 53/171 (30.99%), Postives = 84/171 (49.12%), Query Frame = 1
Query:    1 VYTLKLRGGKFYVGFTKNLPKRLEQHFTGTDSAMWTKYYPMERVIDIEYNGNKFMEGTKVLMLMALHGIDNVRGGAFVTARFTPDERQAIEKQLWGATDACLKCGDPTHFAVDCTSYNKRARMDTTYEDLPPVDEGLFAARRELLRSPHVV----CTRCGRGKHNAAVCFA 501
            +Y L+L  GK+YVG T N   RLE HF   + + WTK Y   +V++I++N + + E     + M  +GI+NVRGG+FV+ + +  ++  + +   G  D C  CG   HFA  C   N++  ++T  +D                          C RCGR  H ++ C+A
Sbjct:    4 IYILQLEKGKYYVGKTNNPQFRLETHFN-LNGSEWTKIYKPLKVLEIKHNCDDYDEDKYTRIYMDKYGINNVRGGSFVSVKLSKSQKDILHQMRNGTHDKCFICGKGGHFAKYC---NEKECVETNNDDESXXXXXXXXXXXXXXXXXXXXXXDCCFRCGRKGHYSSSCYA 170          
BLAST of jgi.p|Trimin1|140995 vs. uniprot
Match: A0A6C0JC79_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0JC79_9ZZZZ)

HSP 1 Score: 90.9 bits (224), Expect = 1.170e-19
Identity = 56/189 (29.63%), Postives = 90/189 (47.62%), Query Frame = 1
Query:    1 VYTLKLRGGKFYVGFTKNLPKRLEQHFTGTDSAMWTKYYPMERVIDIEYNGNKFMEGTKVLMLMALHGIDNVRGGAFVTARFTPDERQAIEKQLWGATDACLKCGDPTHFAVDCTSYNK-RARMDTTYEDLPPVD---------------EGLFAARR--ELLRSPH----VVCTRCGRGKHNAAVCFA 501
            +YT++L  GK+Y+G T N   RL+ HF    S  WTK Y   +V++I  N + + E    +  M  +GI+NVRGG+FV+ +        ++K   GA + C  CG   HFA DC          D  YE++   +               E ++  ++  +++   +      C RCGR  H+A+ C+A
Sbjct:    4 IYTIQLDKGKYYIGKTNNPQFRLKSHFNSNGSE-WTKIYKPLKVLEITPNCDDYDEDKITIQYMDKYGINNVRGGSFVSVKLDRSTIDTLKKMSNGANNKCFICGKGGHFAKDCKENECWETDSDEDYEEVWGCEYCGKEFDTQKGAIYHENIYCKKKYKQIIYKSNDRKISSCFRCGRESHSASYCYA 191          
BLAST of jgi.p|Trimin1|140995 vs. uniprot
Match: A0A6C0HQA0_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0HQA0_9ZZZZ)

HSP 1 Score: 88.6 bits (218), Expect = 1.380e-19
Identity = 46/114 (40.35%), Postives = 61/114 (53.51%), Query Frame = 1
Query:    1 VYTLKLRGGKFYVGFTKNLPKRLEQHFTGTDSAMWTKYYPMERVIDIEYNGNKFMEGTKVLMLMALHGIDNVRGGAFVTARFTPDERQAIEKQLWGATDACLKCGDPTHFAVDC 342
            +Y L+L  GKFYVG T N   RL+ HF    SA WTK Y   ++I++  N + + E     M M  +GIDNVRGG+FV+       +  + +   G  D C  CG   HFA DC
Sbjct:    4 IYILQLEKGKFYVGKTINPSFRLDSHFNSNGSA-WTKLYKPIKMIELIPNCDDYDEDKYTRMFMDKYGIDNVRGGSFVSVELEQSTKTHLTQMKNGTNDKCFNCGKSGHFAKDC 116          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|140995 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YSD6_9STRA7.680e-126100.00GIY-YIG domain-containing protein (Fragment) n=1 T... [more]
A0A835YZI4_9STRA2.310e-7083.33CCHC-type domain-containing protein (Fragment) n=2... [more]
A0A6C0E0W1_9ZZZZ3.460e-2333.71Uncharacterized protein n=1 Tax=viral metagenome T... [more]
A0A6C0DJP0_9ZZZZ2.500e-2132.40Uncharacterized protein n=1 Tax=viral metagenome T... [more]
A0A3G5A8D2_9VIRU5.400e-2142.24GIY-YIG nuclease n=1 Tax=Hyperionvirus sp. TaxID=2... [more]
A0A6C0LNL3_9ZZZZ9.830e-2139.47GIY-YIG domain-containing protein n=1 Tax=viral me... [more]
A0A6C0JPV8_9ZZZZ1.120e-2031.25Uncharacterized protein n=1 Tax=viral metagenome T... [more]
A0A6C0E9U8_9ZZZZ1.840e-2030.99Uncharacterized protein n=1 Tax=viral metagenome T... [more]
A0A6C0JC79_9ZZZZ1.170e-1929.63Uncharacterized protein n=1 Tax=viral metagenome T... [more]
A0A6C0HQA0_9ZZZZ1.380e-1940.35Uncharacterized protein n=1 Tax=viral metagenome T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_5contigContig_5:1017325..1017828 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|140995|gw1.5.120.1
BRITEko00000,ko03000
KEGG koko:K09250
Descriptionzinc finger
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGs2E365@1|root,2SAAX@2759|Eukaryota
Evalue1.03e-23
Seed ortholog4792.ETI40842
Hectar predicted targeting categoryother localisation
TranscriptId141317
TrackFilteredModels1
ProteinId140995
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|140995gene_2363Tribonema minus UTEX_B_3156 geneContig_5 1017325..1017828 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_2363_1exon_2363_1Tribonema minus UTEX_B_3156 exonContig_5 1017325..1017828 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_2363CDS_2363Tribonema minus UTEX_B_3156 CDSContig_5 1017325..1017828 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|140995Trimin1|140995|gw1.5.120.1Tribonema minus UTEX_B_3156 polypeptideContig_5 1017325..1017828 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_2363 ID=mRNA_2363|Name=jgi.p|Trimin1|140995|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=504bp|location=Sequence derived from alignment at Contig_5:1017325..1017828- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GTCTACACACTGAAGCTGCGGGGGGGCAAATTCTATGTGGGGTTCACAAA
AAACCTCCCCAAGCGACTCGAGCAGCACTTCACCGGCACCGACAGCGCCA
TGTGGACCAAGTATTATCCCATGGAGCGCGTCATCGACATTGAGTACAAT
GGCAACAAATTCATGGAAGGTACAAAAGTGCTCATGTTGATGGCGCTTCA
TGGCATTGACAACGTGAGAGGGGGGGCGTTCGTCACAGCGCGGTTCACGC
CAGATGAGAGGCAGGCGATCGAGAAGCAACTGTGGGGAGCGACGGACGCA
TGCCTTAAGTGCGGCGACCCCACGCACTTCGCGGTGGACTGTACATCCTA
CAACAAGCGTGCGCGCATGGATACGACGTACGAGGATTTGCCACCCGTCG
ACGAGGGGCTGTTCGCGGCGAGGCGGGAGTTGCTGCGATCGCCACACGTG
GTGTGCACGAGGTGCGGCAGGGGGAAGCACAATGCAGCAGTATGCTTTGC
GAAG
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protein sequence of jgi.p|Trimin1|140995

>Trimin1|140995|gw1.5.120.1 ID=Trimin1|140995|gw1.5.120.1|Name=jgi.p|Trimin1|140995|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=168bp
VYTLKLRGGKFYVGFTKNLPKRLEQHFTGTDSAMWTKYYPMERVIDIEYN
GNKFMEGTKVLMLMALHGIDNVRGGAFVTARFTPDERQAIEKQLWGATDA
CLKCGDPTHFAVDCTSYNKRARMDTTYEDLPPVDEGLFAARRELLRSPHV
VCTRCGRGKHNAAVCFAK
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mRNA from alignment at Contig_5:1017325..1017828-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2363 ID=mRNA_2363|Name=jgi.p|Trimin1|140995|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=504bp|location=Sequence derived from alignment at Contig_5:1017325..1017828- (Tribonema minus UTEX_B_3156 )
GTCTACACACTGAAGCTGCGGGGGGGCAAATTCTATGTGGGGTTCACAAA AAACCTCCCCAAGCGACTCGAGCAGCACTTCACCGGCACCGACAGCGCCA TGTGGACCAAGTATTATCCCATGGAGCGCGTCATCGACATTGAGTACAAT GGCAACAAATTCATGGAAGGTACAAAAGTGCTCATGTTGATGGCGCTTCA TGGCATTGACAACGTGAGAGGGGGGGCGTTCGTCACAGCGCGGTTCACGC CAGATGAGAGGCAGGCGATCGAGAAGCAACTGTGGGGAGCGACGGACGCA TGCCTTAAGTGCGGCGACCCCACGCACTTCGCGGTGGACTGTACATCCTA CAACAAGCGTGCGCGCATGGATACGACGTACGAGGATTTGCCACCCGTCG ACGAGGGGCTGTTCGCGGCGAGGCGGGAGTTGCTGCGATCGCCACACGTG GTGTGCACGAGGTGCGGCAGGGGGAAGCACAATGCAGCAGTATGCTTTGC GAAG
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Coding sequence (CDS) from alignment at Contig_5:1017325..1017828-

>mRNA_2363 ID=mRNA_2363|Name=jgi.p|Trimin1|140995|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=504bp|location=Sequence derived from alignment at Contig_5:1017325..1017828- (Tribonema minus UTEX_B_3156 )
GTCTACACACTGAAGCTGCGGGGGGGCAAATTCTATGTGGGGTTCACAAA
AAACCTCCCCAAGCGACTCGAGCAGCACTTCACCGGCACCGACAGCGCCA
TGTGGACCAAGTATTATCCCATGGAGCGCGTCATCGACATTGAGTACAAT
GGCAACAAATTCATGGAAGGTACAAAAGTGCTCATGTTGATGGCGCTTCA
TGGCATTGACAACGTGAGAGGGGGGGCGTTCGTCACAGCGCGGTTCACGC
CAGATGAGAGGCAGGCGATCGAGAAGCAACTGTGGGGAGCGACGGACGCA
TGCCTTAAGTGCGGCGACCCCACGCACTTCGCGGTGGACTGTACATCCTA
CAACAAGCGTGCGCGCATGGATACGACGTACGAGGATTTGCCACCCGTCG
ACGAGGGGCTGTTCGCGGCGAGGCGGGAGTTGCTGCGATCGCCACACGTG
GTGTGCACGAGGTGCGGCAGGGGGAAGCACAATGCAGCAGTATGCTTTGC
GAAG
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