mRNA_2397 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|140324
Unique NamemRNA_2397
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|140324 vs. uniprot
Match: A0A835YR09_9STRA (Kinase-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR09_9STRA)

HSP 1 Score: 135 bits (341), Expect = 1.280e-40
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 1 
Query:    1 QLFDRIVATQFYTEKEARDLCKTLLDAIKYCHDKNIVHGNVKLENLLLTSNDDDASIKLADFGFAK 198
            QLFDRIVATQFYTEKEARDLCKTLLDAIKYCHDKNIVHGNVKLENLLLTSNDDDASIKLADFGFAK
Sbjct:    1 QLFDRIVATQFYTEKEARDLCKTLLDAIKYCHDKNIVHGNVKLENLLLTSNDDDASIKLADFGFAK 66
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BLAST of jgi.p|Trimin1|140324 vs. uniprot
Match: A0A835YZ60_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ60_9STRA)

HSP 1 Score: 116 bits (290), Expect = 8.150e-30
Identity = 56/66 (84.85%), Postives = 61/66 (92.42%), Query Frame = 1 
Query:    1 QLFDRIVATQFYTEKEARDLCKTLLDAIKYCHDKNIVHGNVKLENLLLTSNDDDASIKLADFGFAK 198
            +LFDRIV  QFYTEKEARDLCK LLDAIKYCHD++IVH ++K ENLLLTSNDDDASIKLADFGFAK
Sbjct:  125 ELFDRIVKKQFYTEKEARDLCKILLDAIKYCHDRDIVHRDLKPENLLLTSNDDDASIKLADFGFAK 190
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BLAST of jgi.p|Trimin1|140324 vs. uniprot
Match: D0P204_PHYIT (Calcium/calmodulin dependent protein kinase, putative n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0P204_PHYIT)

HSP 1 Score: 105 bits (261), Expect = 2.020e-26
Identity = 51/66 (77.27%), Postives = 57/66 (86.36%), Query Frame = 1 
Query:    1 QLFDRIVATQFYTEKEARDLCKTLLDAIKYCHDKNIVHGNVKLENLLLTSNDDDASIKLADFGFAK 198
            +LFDRIV   FYTEKEARDL K L+DAIKYCHD+N+VH ++K ENLLL S DDDASIKLADFGFAK
Sbjct:  135 ELFDRIVEKTFYTEKEARDLVKILIDAIKYCHDQNVVHRDLKPENLLLMSADDDASIKLADFGFAK 200
[Close]
BLAST of jgi.p|Trimin1|140324 vs. uniprot
Match: G4ZAF6_PHYSP (Protein kinase domain-containing protein n=7 Tax=Phytophthora TaxID=4783 RepID=G4ZAF6_PHYSP)

HSP 1 Score: 105 bits (261), Expect = 2.520e-25
Identity = 51/66 (77.27%), Postives = 57/66 (86.36%), Query Frame = 1 
Query:    1 QLFDRIVATQFYTEKEARDLCKTLLDAIKYCHDKNIVHGNVKLENLLLTSNDDDASIKLADFGFAK 198
            +LFDRIV   FYTEKEARDL K L+DAIKYCHD+N+VH ++K ENLLL S DDDASIKLADFGFAK
Sbjct:  158 ELFDRIVEKTFYTEKEARDLVKILIDAIKYCHDQNVVHRDLKPENLLLMSADDDASIKLADFGFAK 223
[Close]
BLAST of jgi.p|Trimin1|140324 vs. uniprot
Match: A0A3R7H0L7_9STRA (Protein kinase domain-containing protein n=13 Tax=Phytophthora TaxID=4783 RepID=A0A3R7H0L7_9STRA)

HSP 1 Score: 105 bits (261), Expect = 2.670e-25
Identity = 51/66 (77.27%), Postives = 57/66 (86.36%), Query Frame = 1 
Query:    1 QLFDRIVATQFYTEKEARDLCKTLLDAIKYCHDKNIVHGNVKLENLLLTSNDDDASIKLADFGFAK 198
            +LFDRIV   FYTEKEARDL K L+DAIKYCHD+N+VH ++K ENLLL S DDDASIKLADFGFAK
Sbjct:  162 ELFDRIVEKTFYTEKEARDLVKILIDAIKYCHDQNVVHRDLKPENLLLMSADDDASIKLADFGFAK 227
[Close]
BLAST of jgi.p|Trimin1|140324 vs. uniprot
Match: A0A662YHU2_9STRA (Protein kinase domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YHU2_9STRA)

HSP 1 Score: 105 bits (261), Expect = 3.180e-25
Identity = 51/66 (77.27%), Postives = 57/66 (86.36%), Query Frame = 1 
Query:    1 QLFDRIVATQFYTEKEARDLCKTLLDAIKYCHDKNIVHGNVKLENLLLTSNDDDASIKLADFGFAK 198
            +LFDRIV   FYTEKEARDL K L+DAIKYCHD+N+VH ++K ENLLL S DDDASIKLADFGFAK
Sbjct:  177 ELFDRIVEKTFYTEKEARDLVKILIDAIKYCHDQNVVHRDLKPENLLLMSADDDASIKLADFGFAK 242
[Close]
BLAST of jgi.p|Trimin1|140324 vs. uniprot
Match: A0A6A3XPI0_9STRA (Protein kinase domain-containing protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3XPI0_9STRA)

HSP 1 Score: 105 bits (261), Expect = 6.400e-25
Identity = 51/66 (77.27%), Postives = 57/66 (86.36%), Query Frame = 1 
Query:    1 QLFDRIVATQFYTEKEARDLCKTLLDAIKYCHDKNIVHGNVKLENLLLTSNDDDASIKLADFGFAK 198
            +LFDRIV   FYTEKEARDL K L+DAIKYCHD+N+VH ++K ENLLL S DDDASIKLADFGFAK
Sbjct:  285 ELFDRIVEKTFYTEKEARDLVKILIDAIKYCHDQNVVHRDLKPENLLLMSADDDASIKLADFGFAK 350
[Close]
BLAST of jgi.p|Trimin1|140324 vs. uniprot
Match: M4BQ39_HYAAE (Phosphorylase kinase n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BQ39_HYAAE)

HSP 1 Score: 102 bits (255), Expect = 1.310e-24
Identity = 49/66 (74.24%), Postives = 56/66 (84.85%), Query Frame = 1 
Query:    1 QLFDRIVATQFYTEKEARDLCKTLLDAIKYCHDKNIVHGNVKLENLLLTSNDDDASIKLADFGFAK 198
            +LFDRIV   +Y E+EARDL K LL+AIKYCHD N+VH ++K ENLLLTS DDDASIKLADFGFAK
Sbjct:  104 ELFDRIVKKSYYNEREARDLVKLLLEAIKYCHDANVVHRDLKPENLLLTSKDDDASIKLADFGFAK 169
[Close]
BLAST of jgi.p|Trimin1|140324 vs. uniprot
Match: A0A8K1CDJ7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CDJ7_PYTOL)

HSP 1 Score: 102 bits (254), Expect = 2.170e-24
Identity = 50/66 (75.76%), Postives = 57/66 (86.36%), Query Frame = 1 
Query:    1 QLFDRIVATQFYTEKEARDLCKTLLDAIKYCHDKNIVHGNVKLENLLLTSNDDDASIKLADFGFAK 198
            +LFDRIV   FY+EKEARDL + LLDAIKYCHDK++VH ++K ENLLLTS  DDASIKLADFGFAK
Sbjct:  131 ELFDRIVEKTFYSEKEARDLVRILLDAIKYCHDKDVVHRDLKPENLLLTSATDDASIKLADFGFAK 196
[Close]
BLAST of jgi.p|Trimin1|140324 vs. uniprot
Match: A0A7S2E3F7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2E3F7_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 2.380e-24
Identity = 43/66 (65.15%), Postives = 55/66 (83.33%), Query Frame = 1 
Query:    1 QLFDRIVATQFYTEKEARDLCKTLLDAIKYCHDKNIVHGNVKLENLLLTSNDDDASIKLADFGFAK 198
            +LFDRIVA  +Y EKEARD+CK LL+A+ YCH  N+ H ++K ENLLL +NDDDA++K+ADFGFAK
Sbjct:  107 ELFDRIVAKAYYNEKEARDVCKILLEAVDYCHRNNVAHRDLKPENLLLVTNDDDATVKIADFGFAK 172
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|140324 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YR09_9STRA1.280e-40100.00Kinase-like domain-containing protein (Fragment) n... [more]
A0A835YZ60_9STRA8.150e-3084.85Kinase-like domain-containing protein n=1 Tax=Trib... [more]
D0P204_PHYIT2.020e-2677.27Calcium/calmodulin dependent protein kinase, putat... [more]
G4ZAF6_PHYSP2.520e-2577.27Protein kinase domain-containing protein n=7 Tax=P... [more]
A0A3R7H0L7_9STRA2.670e-2577.27Protein kinase domain-containing protein n=13 Tax=... [more]
A0A662YHU2_9STRA3.180e-2577.27Protein kinase domain-containing protein n=2 Tax=N... [more]
A0A6A3XPI0_9STRA6.400e-2577.27Protein kinase domain-containing protein n=2 Tax=P... [more]
M4BQ39_HYAAE1.310e-2474.24Phosphorylase kinase n=1 Tax=Hyaloperonospora arab... [more]
A0A8K1CDJ7_PYTOL2.170e-2475.76Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S2E3F7_9STRA2.380e-2465.15Hypothetical protein (Fragment) n=1 Tax=Helicothec... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_5contigContig_5:1211833..1212746 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|140324|gw1.5.111.1
BRITEko00000,ko00001,ko01000,ko01001
KEGG Pathwayko04921,ko04925,map04921,map04925
KEGG koko:K08794
EC2.7.11.17
DescriptionBelongs to the protein kinase superfamily
COG categoryT
Max annot lvl4776|Peronosporales
EggNOG OGsKOG0032@1|root,KOG0032@2759|Eukaryota,3Q9SW@4776|Peronosporales
Evalue3.47e-26
Seed ortholog325452.fgenesh_scip_prom.46568.721
Hectar predicted targeting categoryother localisation
TranscriptId140646
TrackFilteredModels1
ProteinId140324
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|140324gene_2397Tribonema minus UTEX_B_3156 geneContig_5 1211833..1212746 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_2397_1exon_2397_1Tribonema minus UTEX_B_3156 exonContig_5 1211833..1211961 +
exon_2397_2exon_2397_2Tribonema minus UTEX_B_3156 exonContig_5 1212678..1212746 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_2397CDS_2397Tribonema minus UTEX_B_3156 CDSContig_5 1211833..1211961 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|140324Trimin1|140324|gw1.5.111.1Tribonema minus UTEX_B_3156 polypeptideContig_5 1211833..1212746 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_2397 ID=mRNA_2397|Name=jgi.p|Trimin1|140324|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=198bp|location=Sequence derived from alignment at Contig_5:1211833..1212746+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CAGCTGTTCGACCGCATCGTGGCGACGCAGTTCTACACGGAGAAGGAGGC
GCGCGACCTGTGCAAGACCCTCCTCGACGCCATCAAGTATTGCCACGACA
AGAACATCGTGCACGGCAATGTCAAGCTGGAGAACCTGCTGCTGACCAGC
AATGACGACGACGCCAGCATCAAGCTGGCGGACTTCGGTTTTGCCAAG
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protein sequence of jgi.p|Trimin1|140324

>Trimin1|140324|gw1.5.111.1 ID=Trimin1|140324|gw1.5.111.1|Name=jgi.p|Trimin1|140324|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=66bp
QLFDRIVATQFYTEKEARDLCKTLLDAIKYCHDKNIVHGNVKLENLLLTS
NDDDASIKLADFGFAK
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mRNA from alignment at Contig_5:1211833..1212746+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2397 ID=mRNA_2397|Name=jgi.p|Trimin1|140324|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=914bp|location=Sequence derived from alignment at Contig_5:1211833..1212746+ (Tribonema minus UTEX_B_3156 )
CAGCTGTTCGACCGCATCGTGGCGACGCAGTTCTACACGGAGAAGGAGGC
GCGCGACCTGTGCAAGACCCTCCTCGACGCCATCAAGTATTGCCACGACA
AGAACATCGTGCACGGCAATGTCAAGCTGGTGAGCTATGCTTGGACACCT
GTGTGTCCAGTCTGCAGTCTTTAGGTTTAAGCTGTGTGATCTCCCAGTTG
AAGTAGGGCTCAGACACCCTATGCCTTGACAGACAGAGTGTCATGCACAC
GTGGATCTCAAAATGCGTGCACACGTTGCGCCTCCCCCCAGTGCTGCTGT
GCTGCGCAAGGCTTTTGCGTTGCATTTTCAATGCATATACCATCGACAAA
AACAAAACTATAGCTGTTCTTTGAAATTTGAAGTACGTGACTTCCTGACA
AAACCTCGTCATGGTGTGATGTTGGGGCAAGTGGTTAACTGCAAGTGCAT
CCCCCACTTCAAGTGTTTGCAAGCTCAGGCCATTTGCATGCATGACACAA
AGGGCTTCAACTGCAACCTCAAGTGTGCCGTCTCTGGACAGCACTTCAAC
GTTGCACGACTCGCGCAGAGGGGCGAGAAGAGCTGCACCTGCAACGCGTA
AACCTGATTCACGACATCCATGGCCTCGCACTACTCTGCCGCATCACGAG
CTGCATGCCTGGCCTGCGTGTTCGGTCAGTTGTGTGAACTCCAGTTGTAC
TCACCGTACAGTCAGGTGTACTCATGCAGTCCAGGTGTACTCGTGCACTG
GACGGCAGGCCTGGTCTGGGGTGTGCACTGGTGCACATCTGCTATCTCTG
CGCCCTTCTCACTCTGAACGCTGTCGCTGCGTGCGCGTCACACAGGAGAA
CCTGCTGCTGACCAGCAATGACGACGACGCCAGCATCAAGCTGGCGGACT
TCGGTTTTGCCAAG
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Coding sequence (CDS) from alignment at Contig_5:1211833..1212746+

>mRNA_2397 ID=mRNA_2397|Name=jgi.p|Trimin1|140324|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=198bp|location=Sequence derived from alignment at Contig_5:1211833..1212746+ (Tribonema minus UTEX_B_3156 )
CAGCTGTTCGACCGCATCGTGGCGACGCAGTTCTACACGGAGAAGGAGGC
GCGCGACCTGTGCAAGACCCTCCTCGACGCCATCAAGTATTGCCACGACA
AGAACATCGTGCACGGCAATGTCAAGCTGGAGAACCTGCTGCTGACCAGC
AATGACGACGACGCCAGCATCAAGCTGGCGGACTTCGGTTTTGCCAAG
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